Clone Sequence Records
BO16020.3prime Sequence
293 bp (293 high quality bases) assembled on 2006-06-16
> BO16020.3prime
ATGGTCTAGAAAGCTTGCACTGCATCCAGGAAAAGGTTCGGCGCGATTTT
TGCGCAGTACGAACTGAATTTTTCGGTTCATGTCCTCGTTGTAAATGGCC
TTGCATTTCTCGAAGTTGATGCGACGACGAACCTGATACGGCTTTTCGTA
GAATCGCGTGCGGCGAAATTGGTCGAGCAGTTCTTCTTTTCCCAAGACGC
GATTTAACAGACGACACGCCTCCTCCACATTATTGTTTTGCACCAGAACG
GTGCGGGCCAGAAACTGCACGTGTCTCATGTCGACTGATAACT
BO16020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32854-PA | 264 | mRpS21-RA | 1..261 | 279..19 | 1305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS21-RB | 475 | CG32854-RB | 97..361 | 283..19 | 1310 | 99.6 | Minus |
mRpS21-RA | 422 | CG32854-RA | 97..361 | 283..19 | 1310 | 99.6 | Minus |
CG8870-RA | 1535 | CG8870-RA | 1416..1531 | 19..134 | 580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13381558..13381713 | 128..283 | 765 | 99.4 | Plus |
3R | 32079331 | 3R | 13381390..13381505 | 19..134 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 08:14:02 has no hits.
BO16020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:45 Download gff for
BO16020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32854-PA | 1..264 | 15..279 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:52:01 Download gff for
BO16020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS21-RA | 90..367 | 12..293 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:27 Download gff for
BO16020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS21-RA | 90..367 | 12..293 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:27 Download gff for
BO16020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13381384..13381503 | 12..132 | 97 | <- | Plus |
3R | 13381563..13381720 | 133..293 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:52:01 Download gff for
BO16020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9207106..9207225 | 12..132 | 97 | <- | Plus |
arm_3R | 9207285..9207442 | 133..293 | 96 | | Plus |
BO16020.5prime Sequence
293 bp (293 high quality bases) assembled on 2006-06-16
> BO16020.5prime
GAAGTTATCAGTCGACATGAGACACGTGCAGTTTCTGGCCCGCACCGTTC
TGGTGCAAAACAATAATGTGGAGGAGGCGTGTCGTCTGTTAAATCGCGTC
TTGGGAAAAGAAGAACTGCTCGACCAATTTCGCCGCACGCGATTCTACGA
AAAGCCGTATCAGGTTCGTCGTCGCATCAACTTCGAGAAATGCAAGGCCA
TTTACAACGAGGACATGAACCGAAAAATTCAGTTCGTACTGCGCAAAAAT
CGCGCCGAACCTTTTCCTGGATGCAGTGCAAGCTTTCTAGACC
BO16020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32854-PA | 264 | mRpS21-RA | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS21-RB | 475 | CG32854-RB | 97..361 | 13..277 | 1310 | 99.6 | Plus |
mRpS21-RA | 422 | CG32854-RA | 97..361 | 13..277 | 1310 | 99.6 | Plus |
CG8870-RA | 1535 | CG8870-RA | 1416..1531 | 277..162 | 580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13381558..13381713 | 168..13 | 765 | 99.4 | Minus |
3R | 32079331 | 3R | 13381390..13381505 | 277..162 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:06:19 has no hits.
BO16020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:46 Download gff for
BO16020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32854-PA | 1..264 | 17..281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:25 Download gff for
BO16020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS21-RA | 92..367 | 5..284 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:11 Download gff for
BO16020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS21-RA | 92..367 | 5..284 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:11 Download gff for
BO16020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13381384..13381503 | 164..284 | 97 | <- | Minus |
3R | 13381563..13381718 | 5..163 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:25 Download gff for
BO16020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9207106..9207225 | 164..284 | 97 | <- | Minus |
arm_3R | 9207285..9207440 | 5..163 | 97 | | Minus |
BO16020.complete Sequence
295 bp assembled on 2008-08-15
GenBank Submission: FJ633669
> BO16020.complete
GAAGTTATCAGTCGACATGAGACACGTGCAGTTTCTGGCCCGCACCGTTC
TGGTGCAAAACAATAATGTGGAGGAGGCGTGTCGTCTGTTAAATCGCGTC
TTGGGAAAAGAAGAACTGCTCGACCAATTTCGCCGCACGCGATTCTACGA
AAAGCCGTATCAGGTTCGTCGTCGCATCAACTTCGAGAAATGCAAGGCCA
TTTACAACGAGGACATGAACCGAAAAATTCAGTTCGTACTGCGCAAAAAT
CGCGCCGAACCTTTTCCTGGATGCAGTGCAAGCTTTCTAGACCAT
BO16020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS21-RB | 264 | CG32854-PB | 1..261 | 17..277 | 1305 | 100 | Plus |
mRpS21-RA | 264 | CG32854-PA | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS21-RB | 475 | CG32854-RB | 97..361 | 13..277 | 1310 | 99.6 | Plus |
mRpS21-RA | 422 | CG32854-RA | 97..361 | 13..277 | 1310 | 99.6 | Plus |
CG8870-RA | 1535 | CG8870-RA | 1416..1531 | 277..162 | 580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13381558..13381713 | 168..13 | 765 | 99.4 | Minus |
3R | 32079331 | 3R | 13381390..13381505 | 277..162 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:45:39 has no hits.
BO16020.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:26 Download gff for
BO16020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS21-RA | 75..350 | 5..284 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:10 Download gff for
BO16020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS21-RA | 101..361 | 17..279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:48 Download gff for
BO16020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS21-RA | 84..344 | 17..279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:35 Download gff for
BO16020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS21-RA | 101..361 | 17..279 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:35 Download gff for
BO16020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13381388..13381503 | 164..279 | 98 | <- | Minus |
3R | 13381563..13381709 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:10 Download gff for
BO16020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9207110..9207225 | 164..279 | 98 | <- | Minus |
arm_3R | 9207285..9207431 | 17..163 | 100 | | Minus |
BO16020.pep Sequence
Translation from 16 to 295
> BO16020.pep
MRHVQFLARTVLVQNNNVEEACRLLNRVLGKEELLDQFRRTRFYEKPYQV
RRRINFEKCKAIYNEDMNRKIQFVLRKNRAEPFPGCSASFLDH
BO16020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS21-PB | 87 | CG32854-PB | 1..87 | 1..87 | 457 | 100 | Plus |
mRpS21-PA | 87 | CG32854-PA | 1..87 | 1..87 | 457 | 100 | Plus |