Clone BO16022 Report

Search the DGRC for BO16022

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptDbi-RA
Protein status:BO16022.pep: Imported from assembly
Sequenced Size:292

Clone Sequence Records

BO16022.3prime Sequence

290 bp (290 high quality bases) assembled on 2006-06-16

> BO16022.3prime
ATGGTCTAGAAAGCTTGCGGCATACTTGGCCACCAGGCCCTCCACAAAGG
TGATGTACTCCTGCTGGGCGGCCTCGCTGCTCTTGCCCTTCTGCTTGTTC
CAGGCCTCCCACTTGGCCTTGCCCTTCAGGTCCAGGAGACCCGGCTTGGC
GGTGTCGTTGTCACCAACGCTGGCCTGCTTGAACAGGGCGTACAGCTGCA
GGAACTCGTCATCACTGGGACGCTTGGTCAGGCTCTTCACCTTCTCGGCG
GCGGCGTTGAATTGCTCGGAAACCATGTCGACTGATAACT

BO16022.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8627-PB 261 Dbi-RB 1..258 276..19 1290 100 Minus
CG8627-PA 261 Dbi-RA 1..258 276..19 1290 100 Minus
CG8498-PA 273 CG8498-RA 154..185 126..95 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-RA 420 CG8627-RA 64..321 276..19 1290 100 Minus
Dbi-RB 386 CG8627-RB 30..287 276..19 1290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7133117..7133364 266..19 1240 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:38:41 has no hits.

BO16022.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:47 Download gff for BO16022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8627-PA 1..261 15..276 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:12:47 Download gff for BO16022.3prime
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 26..290 15..284 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:41 Download gff for BO16022.3prime
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 26..290 15..284 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:41 Download gff for BO16022.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7133114..7133367 15..271 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:12:47 Download gff for BO16022.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7126214..7126467 15..271 98   Minus

BO16022.5prime Sequence

290 bp (290 high quality bases) assembled on 2006-06-16

> BO16022.5prime
GAAGTTATCAGTCGACATGGTTTCCGAGCAATTCAACGCCGCCGCCGAGA
AGGTGAAGAGCCTGACCAAGCGTCCCAGTGATGACGAGTTCCTGCAGCTG
TACGCCCTGTTCAAGCAGGCCAGCGTTGGTGACAACGACACCGCCAAGCC
GGGTCTCCTGGACCTGAAGGGCAAGGCCAAGTGGGAGGCCTGGAACAAGC
AGAAGGGCAAGAGCAGCGAGGCCGCCCAGCAGGAGTACATCACCTTTGTG
GAGGGCCTGGTGGCCAAGTATGCCGCAAGCTTTCTAGACC

BO16022.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8627-PB 261 Dbi-RB 1..258 17..274 1290 100 Plus
CG8627-PA 261 Dbi-RA 1..258 17..274 1290 100 Plus
CG8498-PA 273 CG8498-RA 154..185 167..198 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-RA 420 CG8627-RA 64..321 17..274 1290 100 Plus
Dbi-RB 386 CG8627-RB 30..287 17..274 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7133117..7133364 27..274 1240 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:27:00 has no hits.

BO16022.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:48 Download gff for BO16022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8627-PA 1..261 17..278 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:28 Download gff for BO16022.5prime
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 26..290 9..278 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:08 Download gff for BO16022.5prime
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 26..290 9..278 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:08 Download gff for BO16022.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7133114..7133367 22..278 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:28 Download gff for BO16022.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7126214..7126467 22..278 98   Plus

BO16022.complete Sequence

292 bp assembled on 2008-08-15

GenBank Submission: FJ633670

> BO16022.complete
GAAGTTATCAGTCGACATGGTTTCCGAGCAATTCAACGCCGCCGCCGAGA
AGGTGAAGAGCCTGACCAAGCGTCCCAGTGATGACGAGTTCCTGCAGCTG
TACGCCCTGTTCAAGCAGGCCAGCGTTGGTGACAACGACACCGCCAAGCC
GGGTCTCCTGGACCTGAAGGGCAAGGCCAAGTGGGAGGCCTGGAACAAGC
AGAAGGGCAAGAGCAGCGAGGCCGCCCAGCAGGAGTACATCACCTTTGTG
GAGGGCCTGGTGGCCAAGTATGCCGCAAGCTTTCTAGACCAT

BO16022.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-RA 261 CG8627-PA 1..258 17..274 1290 100 Plus
Dbi-RB 261 CG8627-PB 1..258 17..274 1290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-RA 420 CG8627-RA 64..321 17..274 1290 100 Plus
Dbi-RB 386 CG8627-RB 30..287 17..274 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7133117..7133364 27..274 1240 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:17:55 has no hits.

BO16022.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:27 Download gff for BO16022.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RA 52..316 9..278 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:12 Download gff for BO16022.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 30..287 17..276 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:42 Download gff for BO16022.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RA 56..313 17..276 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:03 Download gff for BO16022.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 30..287 17..276 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:03 Download gff for BO16022.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7133114..7133364 22..276 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:12 Download gff for BO16022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7126214..7126464 22..276 98   Plus

BO16022.pep Sequence

Translation from 16 to 292

> BO16022.pep
MVSEQFNAAAEKVKSLTKRPSDDEFLQLYALFKQASVGDNDTAKPGLLDL
KGKAKWEAWNKQKGKSSEAAQQEYITFVEGLVAKYAASFLDH

BO16022.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-PA 86 CG8627-PA 1..86 1..86 437 100 Plus
Dbi-PB 86 CG8627-PB 1..86 1..86 437 100 Plus
CG8498-PB 90 CG8498-PB 5..84 4..83 251 58.8 Plus
CG8498-PA 90 CG8498-PA 5..84 4..83 251 58.8 Plus
CG8629-PA 84 CG8629-PA 4..84 6..86 225 53.1 Plus