Clone Sequence Records
BO16025.3prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-16
> BO16025.3prime
ATGGTCTAGAAAGCTTGCCGTTTCCATTTTCTTGCTCTCCAAATGGGCCT
TCAACTGCTGGCTGAAGTCGTCCTCCACGTTGTCGTCGTCCCAGTTGTCC
TCCCACACATTTAGCTCTTCCTCGTCGTCGCCAACGCGGAAATCTTCGGC
GGGAAACTCTTCGAACTCGTCGTCCTCCTCCAGGAGACCCAAGTCTTCGC
TCTTGTTGTTGGTCTCCTCCTTCTCTTTCTCCTTTTCCTTATCTGGGGCA
GACATGTCGACTGATAACT
BO16025.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13779-PA | 240 | CG13779-RA | 1..237 | 255..19 | 1185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sem1-RA | 427 | CG13779-RA | 101..337 | 255..19 | 1185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7064251..7064377 | 145..19 | 635 | 100 | Minus |
2L | 23513712 | 2L | 7064086..7064197 | 255..144 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:29:16 has no hits.
BO16025.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:49 Download gff for
BO16025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13779-PA | 1..240 | 15..255 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:46 Download gff for
BO16025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13779-RA | 93..340 | 15..263 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:51 Download gff for
BO16025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sem1-RA | 93..340 | 15..263 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:51 Download gff for
BO16025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7064078..7064197 | 144..263 | 96 | -> | Minus |
2L | 7064253..7064380 | 15..143 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:46 Download gff for
BO16025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7064078..7064197 | 144..263 | 96 | -> | Minus |
arm_2L | 7064253..7064380 | 15..143 | 98 | | Minus |
BO16025.5prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-16
> BO16025.5prime
GAAGTTATCAGTCGACATGTCTGCCCCAGATAAGGAAAAGGAGAAAGAGA
AGGAGGAGACCAACAACAAGAGCGAAGACTTGGGTCTCCTGGAGGAGGAC
GACGAGTTCGAAGAGTTTCCCGCCGAAGATTTCCGCGTTGGCGACGACGA
GGAAGAGCTAAATGTGTGGGAGGACAACTGGGACGACGACAACGTGGAGG
ACGACTTCAGCCAGCAGTTGAAGGCCCATTTGGAGAGCAAGAAAATGGAA
ACGGCAAGCTTTCTAGACC
BO16025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13779-PA | 240 | CG13779-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sem1-RA | 427 | CG13779-RA | 101..337 | 17..253 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7064251..7064377 | 127..253 | 635 | 100 | Plus |
2L | 23513712 | 2L | 7064086..7064197 | 17..128 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:34:21 has no hits.
BO16025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:49 Download gff for
BO16025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13779-PA | 1..240 | 17..257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:29 Download gff for
BO16025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13779-RA | 93..340 | 9..257 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:37:38 Download gff for
BO16025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sem1-RA | 93..340 | 9..257 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:37:38 Download gff for
BO16025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7064078..7064197 | 9..128 | 96 | -> | Plus |
2L | 7064253..7064380 | 129..257 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:29 Download gff for
BO16025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7064078..7064197 | 9..128 | 96 | -> | Plus |
arm_2L | 7064253..7064380 | 129..257 | 98 | | Plus |
BO16025.complete Sequence
271 bp assembled on 2008-08-15
GenBank Submission: FJ633672
> BO16025.complete
GAAGTTATCAGTCGACATGTCTGCCCCAGATAAGGAAAAGGAGAAAGAGA
AGGAGGAGACCAACAACAAGAGCGAAGACTTGGGTCTCCTGGAGGAGGAC
GACGAGTTCGAAGAGTTTCCCGCCGAAGATTTCCGCGTTGGCGACGACGA
GGAAGAGCTAAATGTGTGGGAGGACAACTGGGACGACGACAACGTGGAGG
ACGACTTCAGCCAGCAGTTGAAGGCCCATTTGGAGAGCAAGAAAATGGAA
ACGGCAAGCTTTCTAGACCAT
BO16025.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sem1-RA | 240 | CG13779-PA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sem1-RA | 427 | CG13779-RA | 101..337 | 17..253 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7064251..7064377 | 127..253 | 635 | 100 | Plus |
2L | 23513712 | 2L | 7064086..7064197 | 17..128 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:18:20 has no hits.
BO16025.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:50:52 Download gff for
BO16025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13779-RA | 94..341 | 9..257 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:02 Download gff for
BO16025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13779-RA | 101..337 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:36 Download gff for
BO16025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13779-RA | 102..338 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:36 Download gff for
BO16025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sem1-RA | 101..337 | 17..255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:36 Download gff for
BO16025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7064086..7064197 | 17..128 | 100 | -> | Plus |
2L | 7064253..7064377 | 129..255 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:02 Download gff for
BO16025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7064086..7064197 | 17..128 | 100 | -> | Plus |
arm_2L | 7064253..7064377 | 129..255 | 98 | | Plus |
BO16025.pep Sequence
Translation from 16 to 271
> BO16025.pep
MSAPDKEKEKEKEETNNKSEDLGLLEEDDEFEEFPAEDFRVGDDEEELNV
WEDNWDDDNVEDDFSQQLKAHLESKKMETASFLDH
BO16025.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sem1-PA | 79 | CG13779-PA | 1..79 | 1..79 | 422 | 100 | Plus |