Clone Sequence Records
BO16028.3prime Sequence
290 bp (290 high quality bases) assembled on 2006-06-16
> BO16028.3prime
ATGGTCTAGAAAGCTTGCGGTGGATGCGGCTGGTGCCTGAAGAAATGTTT
CGTTAAGTTTTTGCAGACCCTCCTGCACGGTATTTAATCCATCCTTGAAG
AGACCCTCAACCTTCTTCGCGTCCAACGCCTTCAACTTTTCAATGAATTC
GTTGAAATCACCCTGGGCCTTGGTAAGAAATTCTTGGGCAGGATTGGATT
CCTCACGGGGGACGCGGGCGGACAGAGCCAAGGCGAACAGGGCGAACACG
AGGATGCAAATTGCGAGCTTGGCCATGTCGACTGATAACT
BO16028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11051-PA | 261 | Nplp2-RA | 1..258 | 276..19 | 1290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-RC | 452 | CG11051-RC | 66..323 | 276..19 | 1290 | 100 | Minus |
| Nplp2-RB | 610 | CG11051-RB | 224..481 | 276..19 | 1290 | 100 | Minus |
| Nplp2-RA | 452 | CG11051-RA | 66..323 | 276..19 | 1290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:07:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13356727..13356853 | 231..105 | 635 | 100 | Minus |
| 3L | 28110227 | 3L | 13357006..13357094 | 107..19 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 13356599..13356643 | 276..232 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:07:59 has no hits.
BO16028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:50 Download gff for
BO16028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11051-PA | 1..261 | 15..276 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 16:58:40 Download gff for
BO16028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..332 | 10..276 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:12 Download gff for
BO16028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..332 | 10..276 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:12 Download gff for
BO16028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13356599..13356643 | 232..276 | 100 | -> | Minus |
| 3L | 13356727..13356852 | 106..231 | 100 | -> | Minus |
| 3L | 13357008..13357103 | 10..105 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 16:58:40 Download gff for
BO16028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13349699..13349743 | 232..276 | 100 | -> | Minus |
| arm_3L | 13349827..13349952 | 106..231 | 100 | -> | Minus |
| arm_3L | 13350108..13350203 | 10..105 | 95 | | Minus |
BO16028.5prime Sequence
290 bp (290 high quality bases) assembled on 2006-06-16
> BO16028.5prime
GAAGTTATCAGTCGACATGGCCAAGCTCGCAATTTGCATCCTCGTGTTCG
CCCTGTTCGCCTTGGCTCTGTCCGCCCGCGTCCCCCGTGAGGAATCCAAT
CCTGCCCAAGAATTTCTTACCAAGGCCCAGGGTGATTTCAACGAATTCAT
TGAAAAGTTGAAGGCGTTGGACGCGAAGAAGGTTGAGGGTCTCTTCAAGG
ATGGATTAAATACCGTGCAGGAGGGTCTGCAAAAACTTAACGAAACATTT
CTTCAGGCACCAGCCGCATCCACCGCAAGCTTTCTAGACC
BO16028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11051-PA | 261 | Nplp2-RA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-RC | 452 | CG11051-RC | 66..323 | 17..274 | 1290 | 100 | Plus |
| Nplp2-RB | 610 | CG11051-RB | 224..481 | 17..274 | 1290 | 100 | Plus |
| Nplp2-RA | 452 | CG11051-RA | 66..323 | 17..274 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13356727..13356853 | 62..188 | 635 | 100 | Plus |
| 3L | 28110227 | 3L | 13357006..13357094 | 186..274 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 13356599..13356643 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:31:17 has no hits.
BO16028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:51 Download gff for
BO16028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11051-PA | 1..261 | 17..278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:34:29 Download gff for
BO16028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..332 | 17..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:39 Download gff for
BO16028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..332 | 17..283 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:39 Download gff for
BO16028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13356599..13356643 | 17..61 | 100 | -> | Plus |
| 3L | 13356727..13356852 | 62..187 | 100 | -> | Plus |
| 3L | 13357008..13357103 | 188..283 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:34:29 Download gff for
BO16028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13349699..13349743 | 17..61 | 100 | -> | Plus |
| arm_3L | 13349827..13349952 | 62..187 | 100 | -> | Plus |
| arm_3L | 13350108..13350203 | 188..283 | 95 | | Plus |
BO16028.complete Sequence
292 bp assembled on 2008-08-15
GenBank Submission: FJ633673
> BO16028.complete
GAAGTTATCAGTCGACATGGCCAAGCTCGCAATTTGCATCCTCGTGTTCG
CCCTGTTCGCCTTGGCTCTGTCCGCCCGCGTCCCCCGTGAGGAATCCAAT
CCTGCCCAAGAATTTCTTACCAAGGCCCAGGGTGATTTCAACGAATTCAT
TGAAAAGTTGAAGGCGTTGGACGCGAAGAAGGTTGAGGGTCTCTTCAAGG
ATGGATTAAATACCGTGCAGGAGGGTCTGCAAAAACTTAACGAAACATTT
CTTCAGGCACCAGCCGCATCCACCGCAAGCTTTCTAGACCAT
BO16028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-RC | 360 | CG11051-PC | 1..258 | 17..274 | 1290 | 100 | Plus |
| Nplp2-RB | 261 | CG11051-PB | 1..258 | 17..274 | 1290 | 100 | Plus |
| Nplp2-RA | 261 | CG11051-PA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-RC | 452 | CG11051-RC | 66..323 | 17..274 | 1290 | 100 | Plus |
| Nplp2-RB | 610 | CG11051-RB | 224..481 | 17..274 | 1290 | 100 | Plus |
| Nplp2-RA | 452 | CG11051-RA | 66..323 | 17..274 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13356727..13356853 | 62..188 | 635 | 100 | Plus |
| 3L | 28110227 | 3L | 13357006..13357094 | 186..274 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 13356599..13356643 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:43 has no hits.
BO16028.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:35 Download gff for
BO16028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 67..333 | 17..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:27 Download gff for
BO16028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..323 | 17..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:59 Download gff for
BO16028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 67..324 | 17..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:02 Download gff for
BO16028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..323 | 17..276 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:02 Download gff for
BO16028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13356599..13356643 | 17..61 | 100 | -> | Plus |
| 3L | 13356727..13356852 | 62..187 | 100 | -> | Plus |
| 3L | 13357008..13357094 | 188..276 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:27 Download gff for
BO16028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13349699..13349743 | 17..61 | 100 | -> | Plus |
| arm_3L | 13349827..13349952 | 62..187 | 100 | -> | Plus |
| arm_3L | 13350108..13350194 | 188..276 | 97 | | Plus |
BO16028.pep Sequence
Translation from 16 to 292
> BO16028.pep
MAKLAICILVFALFALALSARVPREESNPAQEFLTKAQGDFNEFIEKLKA
LDAKKVEGLFKDGLNTVQEGLQKLNETFLQAPAASTASFLDH
BO16028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-PB | 86 | CG11051-PB | 1..86 | 1..86 | 422 | 100 | Plus |
| Nplp2-PA | 86 | CG11051-PA | 1..86 | 1..86 | 422 | 100 | Plus |
| Nplp2-PC | 119 | CG11051-PC | 1..86 | 1..86 | 422 | 100 | Plus |
