Clone Sequence Records
BO16030.3prime Sequence
371 bp (371 high quality bases) assembled on 2006-06-16
> BO16030.3prime
ATGGTCTAGAAAGCTTGCGATGAACTTGAACTGGCGGTCCTTGTAGGCCA
CCTGGCCAGTCCTGTACTTCTCCTCGCGTCCATCGCGCTCCGCCTTCAAA
GCCCAGGCGTAGAGGGCAATCGGCAGGACGACGGCGAAAAGGCCCGTGCG
GAAGGATTTGCCGGTGGGCTTGAAGTGTTCGTAGTTGGAGACTCGCATCG
CCTGGAAACGGGCTAATCCCGCATCGAAAACGGTGCCGCCCTCGCCGGTG
GCATGGCGGTAGGGATTGGAGCTCTGCTTGAGGAACTCCTGGCGCAGCTT
CAGCGTCGCCTCGTGCTTGCGCTTAATGAACTCCTGCTCCTCGTTGGACA
AAACCATGTCGACTGATAACT
BO16030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-PA | 342 | CG12859-RA | 1..339 | 357..19 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-RA | 477 | CG12859-RA | 70..408 | 357..19 | 1695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14756794..14757003 | 228..19 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 14756585..14756713 | 357..229 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:18:23 has no hits.
BO16030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:53 Download gff for
BO16030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:33 Download gff for
BO16030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 64..413 | 13..364 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:48 Download gff for
BO16030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 64..413 | 13..364 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:48 Download gff for
BO16030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14756579..14756713 | 229..364 | 97 | -> | Minus |
2R | 14756794..14757008 | 13..228 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:33 Download gff for
BO16030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644084..10644218 | 229..364 | 97 | -> | Minus |
arm_2R | 10644299..10644513 | 13..228 | 99 | | Minus |
BO16030.5prime Sequence
371 bp (371 high quality bases) assembled on 2006-06-16
> BO16030.5prime
GAAGTTATCAGTCGACATGGTTTTGTCCAACGAGGAGCAGGAGTTCATTA
AGCGCAAGCACGAGGCGACGCTGAAGCTGCGCCAGGAGTTCCTCAAGCAG
AGCTCCAATCCCTACCGCCATGCCACCGGCGAGGGCGGCACCGTTTTCGA
TGCGGGATTAGCCCGTTTCCAGGCGATGCGAGTCTCCAACTACGAACACT
TCAAGCCCACCGGCAAATCCTTCCGCACGGGCCTTTTCGCCGTCGTCCTG
CCGATTGCCCTCTACGCCTGGGCTTTGAAGGCGGAGCGCGATGGACGCGA
GGAGAAGTACAGGACTGGCCAGGTGGCCTACAAGGACCGCCAGTTCAAGT
TCATCGCAAGCTTTCTAGACC
BO16030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-PA | 342 | CG12859-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-RA | 477 | CG12859-RA | 70..408 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14756794..14757003 | 146..355 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 14756585..14756713 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:34:51 has no hits.
BO16030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:54 Download gff for
BO16030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:41 Download gff for
BO16030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 64..413 | 10..361 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:20 Download gff for
BO16030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 64..413 | 10..361 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:20 Download gff for
BO16030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14756794..14757008 | 146..361 | 99 | | Plus |
2R | 14756579..14756713 | 10..145 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:41 Download gff for
BO16030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644084..10644218 | 10..145 | 97 | -> | Plus |
arm_2R | 10644299..10644513 | 146..361 | 99 | | Plus |
BO16030.complete Sequence
373 bp assembled on 2008-08-15
GenBank Submission: FJ633675
> BO16030.complete
GAAGTTATCAGTCGACATGGTTTTGTCCAACGAGGAGCAGGAGTTCATTA
AGCGCAAGCACGAGGCGACGCTGAAGCTGCGCCAGGAGTTCCTCAAGCAG
AGCTCCAATCCCTACCGCCATGCCACCGGCGAGGGCGGCACCGTTTTCGA
TGCGGGATTAGCCCGTTTCCAGGCGATGCGAGTCTCCAACTACGAACACT
TCAAGCCCACCGGCAAATCCTTCCGCACGGGCCTTTTCGCCGTCGTCCTG
CCGATTGCCCTCTACGCCTGGGCTTTGAAGGCGGAGCGCGATGGACGCGA
GGAGAAGTACAGGACTGGCCAGGTGGCCTACAAGGACCGCCAGTTCAAGT
TCATCGCAAGCTTTCTAGACCAT
BO16030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-RA | 342 | CG12859-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-RA | 477 | CG12859-RA | 70..408 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14756794..14757003 | 146..355 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 14756585..14756713 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:36 has no hits.
BO16030.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:29 Download gff for
BO16030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 59..408 | 10..361 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:00 Download gff for
BO16030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 70..408 | 17..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:25 Download gff for
BO16030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 65..403 | 17..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:06 Download gff for
BO16030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 70..408 | 17..357 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:06 Download gff for
BO16030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14756585..14756713 | 17..145 | 100 | -> | Plus |
2R | 14756794..14757003 | 146..357 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:00 Download gff for
BO16030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644090..10644218 | 17..145 | 100 | -> | Plus |
arm_2R | 10644299..10644508 | 146..357 | 99 | | Plus |
BO16030.pep Sequence
Translation from 16 to 373
> BO16030.pep
MVLSNEEQEFIKRKHEATLKLRQEFLKQSSNPYRHATGEGGTVFDAGLAR
FQAMRVSNYEHFKPTGKSFRTGLFAVVLPIALYAWALKAERDGREEKYRT
GQVAYKDRQFKFIASFLDH
BO16030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-PA | 113 | CG12859-PA | 1..113 | 1..113 | 585 | 100 | Plus |