Clone BO16030 Report

Search the DGRC for BO16030

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG12859-RA
Protein status:BO16030.pep: Imported from assembly
Sequenced Size:373

Clone Sequence Records

BO16030.3prime Sequence

371 bp (371 high quality bases) assembled on 2006-06-16

> BO16030.3prime
ATGGTCTAGAAAGCTTGCGATGAACTTGAACTGGCGGTCCTTGTAGGCCA
CCTGGCCAGTCCTGTACTTCTCCTCGCGTCCATCGCGCTCCGCCTTCAAA
GCCCAGGCGTAGAGGGCAATCGGCAGGACGACGGCGAAAAGGCCCGTGCG
GAAGGATTTGCCGGTGGGCTTGAAGTGTTCGTAGTTGGAGACTCGCATCG
CCTGGAAACGGGCTAATCCCGCATCGAAAACGGTGCCGCCCTCGCCGGTG
GCATGGCGGTAGGGATTGGAGCTCTGCTTGAGGAACTCCTGGCGCAGCTT
CAGCGTCGCCTCGTGCTTGCGCTTAATGAACTCCTGCTCCTCGTTGGACA
AAACCATGTCGACTGATAACT

BO16030.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12859-PA 342 CG12859-RA 1..339 357..19 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12859-RA 477 CG12859-RA 70..408 357..19 1695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14756794..14757003 228..19 1050 100 Minus
2R 25286936 2R 14756585..14756713 357..229 645 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:18:23 has no hits.

BO16030.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:53 Download gff for BO16030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12859-PA 1..342 15..357 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:33 Download gff for BO16030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12859-RA 64..413 13..364 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:48 Download gff for BO16030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12859-RA 64..413 13..364 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:48 Download gff for BO16030.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14756579..14756713 229..364 97 -> Minus
2R 14756794..14757008 13..228 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:33 Download gff for BO16030.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644084..10644218 229..364 97 -> Minus
arm_2R 10644299..10644513 13..228 99   Minus

BO16030.5prime Sequence

371 bp (371 high quality bases) assembled on 2006-06-16

> BO16030.5prime
GAAGTTATCAGTCGACATGGTTTTGTCCAACGAGGAGCAGGAGTTCATTA
AGCGCAAGCACGAGGCGACGCTGAAGCTGCGCCAGGAGTTCCTCAAGCAG
AGCTCCAATCCCTACCGCCATGCCACCGGCGAGGGCGGCACCGTTTTCGA
TGCGGGATTAGCCCGTTTCCAGGCGATGCGAGTCTCCAACTACGAACACT
TCAAGCCCACCGGCAAATCCTTCCGCACGGGCCTTTTCGCCGTCGTCCTG
CCGATTGCCCTCTACGCCTGGGCTTTGAAGGCGGAGCGCGATGGACGCGA
GGAGAAGTACAGGACTGGCCAGGTGGCCTACAAGGACCGCCAGTTCAAGT
TCATCGCAAGCTTTCTAGACC

BO16030.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12859-PA 342 CG12859-RA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12859-RA 477 CG12859-RA 70..408 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14756794..14757003 146..355 1050 100 Plus
2R 25286936 2R 14756585..14756713 17..145 645 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:34:51 has no hits.

BO16030.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:54 Download gff for BO16030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12859-PA 1..342 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:41 Download gff for BO16030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12859-RA 64..413 10..361 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:20 Download gff for BO16030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12859-RA 64..413 10..361 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:20 Download gff for BO16030.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14756794..14757008 146..361 99   Plus
2R 14756579..14756713 10..145 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:41 Download gff for BO16030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644084..10644218 10..145 97 -> Plus
arm_2R 10644299..10644513 146..361 99   Plus

BO16030.complete Sequence

373 bp assembled on 2008-08-15

GenBank Submission: FJ633675

> BO16030.complete
GAAGTTATCAGTCGACATGGTTTTGTCCAACGAGGAGCAGGAGTTCATTA
AGCGCAAGCACGAGGCGACGCTGAAGCTGCGCCAGGAGTTCCTCAAGCAG
AGCTCCAATCCCTACCGCCATGCCACCGGCGAGGGCGGCACCGTTTTCGA
TGCGGGATTAGCCCGTTTCCAGGCGATGCGAGTCTCCAACTACGAACACT
TCAAGCCCACCGGCAAATCCTTCCGCACGGGCCTTTTCGCCGTCGTCCTG
CCGATTGCCCTCTACGCCTGGGCTTTGAAGGCGGAGCGCGATGGACGCGA
GGAGAAGTACAGGACTGGCCAGGTGGCCTACAAGGACCGCCAGTTCAAGT
TCATCGCAAGCTTTCTAGACCAT

BO16030.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12859-RA 342 CG12859-PA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12859-RA 477 CG12859-RA 70..408 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14756794..14757003 146..355 1050 100 Plus
2R 25286936 2R 14756585..14756713 17..145 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:47:36 has no hits.

BO16030.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:29 Download gff for BO16030.complete
Subject Subject Range Query Range Percent Splice Strand
CG12859-RA 59..408 10..361 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:00 Download gff for BO16030.complete
Subject Subject Range Query Range Percent Splice Strand
CG12859-RA 70..408 17..357 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:25 Download gff for BO16030.complete
Subject Subject Range Query Range Percent Splice Strand
CG12859-RA 65..403 17..357 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:06 Download gff for BO16030.complete
Subject Subject Range Query Range Percent Splice Strand
CG12859-RA 70..408 17..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:06 Download gff for BO16030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14756585..14756713 17..145 100 -> Plus
2R 14756794..14757003 146..357 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:00 Download gff for BO16030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644090..10644218 17..145 100 -> Plus
arm_2R 10644299..10644508 146..357 99   Plus

BO16030.pep Sequence

Translation from 16 to 373

> BO16030.pep
MVLSNEEQEFIKRKHEATLKLRQEFLKQSSNPYRHATGEGGTVFDAGLAR
FQAMRVSNYEHFKPTGKSFRTGLFAVVLPIALYAWALKAERDGREEKYRT
GQVAYKDRQFKFIASFLDH

BO16030.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12859-PA 113 CG12859-PA 1..113 1..113 585 100 Plus