Clone Sequence Records
BO16031.3prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-16
> BO16031.3prime
ATGGTCTAGAAAGCTTGCGACCCTCCGCTTCTGCGTGGAAATGTAGAGGA
CATTGTTGCCGCGGATGAAGGCGTCGCCGTACTTGTTCTTCAGCTGCCCA
TTCACGTACTCCTCCGTCTGCTCCAGGCAGATGTTCATGTAGCCATCCAG
ACAGGCCAGCACACCTCGATAGTCAACGCCGTTGTTCAGCTTTACGGCGA
CGGGGCGTCCGTGTATCTGATTGATGAACTGCGACAGGGCCTCTTTGCGG
GACATGTCGACTGATAACT
BO16031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-PA | 240 | CG9344-RA | 1..237 | 255..19 | 1185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-RA | 474 | CG9344-RA | 100..336 | 255..19 | 1185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20977315..20977462 | 166..19 | 740 | 100 | Minus |
2R | 25286936 | 2R | 20977155..20977248 | 255..162 | 470 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 14:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3044..3102 | 123..66 | 112 | 67.8 | Minus |
BO16031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:54 Download gff for
BO16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-PA | 1..240 | 16..255 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:53:52 Download gff for
BO16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 15..255 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:23:46 Download gff for
BO16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 15..255 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:23:46 Download gff for
BO16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20977155..20977245 | 165..255 | 100 | -> | Minus |
2R | 20977317..20977466 | 15..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:53:52 Download gff for
BO16031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16864660..16864750 | 165..255 | 100 | -> | Minus |
arm_2R | 16864822..16864971 | 15..164 | 98 | | Minus |
BO16031.5prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-16
> BO16031.5prime
GAAGTTATCAGTCGACATGTCCCGCAAAGAGGCCCTGTCGCAGTTCATCA
ATCAGATACACGGACGCCCCGTCGCCGTAAAGCTGAACAACGGCGTTGAC
TATCGAGGTGTGCTGGCCTGTCTGGATGGCTACATGAACATCTGCCTGGA
GCAGACGGAGGAGTACGTGAATGGGCAGCTGAAGAACAAGTACGGCGACG
CCTTCATCCGCGGCAACAATGTCCTCTACATTTCCACGCAGAAGCGGAGG
GTCGCAAGCTTTCTAGACC
BO16031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-PA | 240 | CG9344-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-RA | 474 | CG9344-RA | 100..336 | 17..253 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20977315..20977462 | 106..253 | 740 | 100 | Plus |
2R | 25286936 | 2R | 20977155..20977248 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3044..3102 | 149..206 | 112 | 67.8 | Plus |
BO16031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:56 Download gff for
BO16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-PA | 1..240 | 17..256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:16:55 Download gff for
BO16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 17..257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:24 Download gff for
BO16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 17..257 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:24 Download gff for
BO16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20977155..20977245 | 17..107 | 100 | -> | Plus |
2R | 20977317..20977466 | 108..257 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:16:55 Download gff for
BO16031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16864660..16864750 | 17..107 | 100 | -> | Plus |
arm_2R | 16864822..16864971 | 108..257 | 98 | | Plus |
BO16031.complete Sequence
271 bp assembled on 2008-08-15
GenBank Submission: FJ633676
> BO16031.complete
GAAGTTATCAGTCGACATGTCCCGCAAAGAGGCCCTGTCGCAGTTCATCA
ATCAGATACACGGACGCCCCGTCGCCGTAAAGCTGAACAACGGCGTTGAC
TATCGAGGTGTGCTGGCCTGTCTGGATGGCTACATGAACATCTGCCTGGA
GCAGACGGAGGAGTACGTGAATGGGCAGCTGAAGAACAAGTACGGCGACG
CCTTCATCCGCGGCAACAATGTCCTCTACATTTCCACGCAGAAGCGGAGG
GTCGCAAGCTTTCTAGACCAT
BO16031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-RA | 240 | CG9344-PA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-RA | 474 | CG9344-RA | 100..336 | 17..253 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20977315..20977462 | 106..253 | 740 | 100 | Plus |
2R | 25286936 | 2R | 20977155..20977248 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3044..3102 | 149..206 | 112 | 67.8 | Plus |
BO16031.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:58 Download gff for
BO16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..340 | 17..257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:26 Download gff for
BO16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..336 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:24 Download gff for
BO16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..336 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:11 Download gff for
BO16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9344-RA | 100..336 | 17..255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:11 Download gff for
BO16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20977155..20977245 | 17..107 | 100 | -> | Plus |
2R | 20977317..20977462 | 108..255 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:26 Download gff for
BO16031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16864660..16864750 | 17..107 | 100 | -> | Plus |
arm_2R | 16864822..16864967 | 108..255 | 98 | | Plus |
BO16031.pep Sequence
Translation from 16 to 271
> BO16031.pep
MSRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEY
VNGQLKNKYGDAFIRGNNVLYISTQKRRVASFLDH
BO16031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9344-PA | 79 | CG9344-PA | 1..79 | 1..79 | 412 | 100 | Plus |
SmF-PA | 88 | CG16792-PA | 12..74 | 10..72 | 161 | 49.2 | Plus |