Clone Sequence Records
BO16032.3prime Sequence
320 bp (320 high quality bases) assembled on 2006-06-16
> BO16032.3prime
ATGGTCTAGAAAGCTTGCCTTGGGTGCCGCTTCGCTGCCCGCCTGCCCGT
CCATGTTGTCATCTCCCGATTCGGGAGCGTTGTCATTTTCCTCGGCAATC
AGGCGACGGATCTCTCGGTTGGAGTTCAGCAGCTCCCGTAGTTGGGACAT
AATGTCGTCTGTGCGCTGCTCCACGGCGTCCAGGGCACAGCTGAGAGCGT
CCAGACTGTTGTTCACGTCCTCCATCTCTTGGAGGTCCGCCTCCTGGACA
TTGGTGTTGCCAGAGTCGCCGGACGACGAGGGATCATGATTGTTTTTGGG
TGACATGTCGACTGATAACT
BO16032.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14818-PA | 291 | CG14818-RA | 1..288 | 306..19 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14818-RB | 598 | CG14818-RB | 188..475 | 306..19 | 1440 | 100 | Minus |
CG14818-RA | 501 | CG14818-RA | 91..378 | 306..19 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1879142..1879352 | 19..229 | 1055 | 100 | Plus |
X | 23542271 | X | 1879412..1879490 | 228..306 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:31:46 has no hits.
BO16032.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:56 Download gff for
BO16032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-PA | 1..291 | 18..306 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:34:40 Download gff for
BO16032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-RA | 83..378 | 19..314 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:54 Download gff for
BO16032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-RA | 83..378 | 19..314 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:54 Download gff for
BO16032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1879412..1879498 | 228..314 | 95 | | Plus |
X | 1879142..1879350 | 19..227 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:34:40 Download gff for
BO16032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1773175..1773383 | 19..227 | 100 | <- | Plus |
arm_X | 1773445..1773531 | 228..314 | 95 | | Plus |
BO16032.5prime Sequence
320 bp (320 high quality bases) assembled on 2006-06-16
> BO16032.5prime
GAAGTTATCAGTCGACATGTCACCCAAAAACAATCATGATCCCTCGTCGT
CCGGCGACTCTGGCAACACCAATGTCCAGGAGGCGGACCTCCAAGAGATG
GAGGACGTGAACAACAGTCTGGACGCTCTCAGCTGTGCCCTGGACGCCGT
GGAGCAGCGCACAGACGACATTATGTCCCAACTACGGGAGCTGCTGAACT
CCAACCGAGAGATCCGTCGCCTGATTGCCGAGGAAAATGACAACGCTCCC
GAATCGGGAGATGACAACATGGACGGGCAGGCGGGCAGCGAAGCGGCACC
CAAGGCAAGCTTTCTAGACC
BO16032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14818-PA | 291 | CG14818-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14818-RB | 598 | CG14818-RB | 188..475 | 17..304 | 1440 | 100 | Plus |
CG14818-RA | 501 | CG14818-RA | 91..378 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1879142..1879352 | 304..94 | 1055 | 100 | Minus |
X | 23542271 | X | 1879412..1879490 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 08:17:21 has no hits.
BO16032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:57 Download gff for
BO16032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-PA | 1..291 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:52:27 Download gff for
BO16032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-RA | 83..378 | 9..304 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:16 Download gff for
BO16032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-RA | 83..378 | 9..304 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:16 Download gff for
BO16032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1879142..1879350 | 96..304 | 100 | <- | Minus |
X | 1879412..1879498 | 9..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:52:27 Download gff for
BO16032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1773175..1773383 | 96..304 | 100 | <- | Minus |
arm_X | 1773445..1773531 | 9..95 | 95 | | Minus |
BO16032.complete Sequence
322 bp assembled on 2008-08-15
GenBank Submission: FJ633677
> BO16032.complete
GAAGTTATCAGTCGACATGTCACCCAAAAACAATCATGATCCCTCGTCGT
CCGGCGACTCTGGCAACACCAATGTCCAGGAGGCGGACCTCCAAGAGATG
GAGGACGTGAACAACAGTCTGGACGCTCTCAGCTGTGCCCTGGACGCCGT
GGAGCAGCGCACAGACGACATTATGTCCCAACTACGGGAGCTGCTGAACT
CCAACCGAGAGATCCGTCGCCTGATTGCCGAGGAAAATGACAACGCTCCC
GAATCGGGAGATGACAACATGGACGGGCAGGCGGGCAGCGAAGCGGCACC
CAAGGCAAGCTTTCTAGACCAT
BO16032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14818-RB | 291 | CG14818-PB | 1..288 | 17..304 | 1440 | 100 | Plus |
CG14818-RA | 291 | CG14818-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14818-RB | 598 | CG14818-RB | 188..475 | 17..304 | 1440 | 100 | Plus |
CG14818-RA | 501 | CG14818-RA | 91..378 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1879142..1879352 | 304..94 | 1055 | 100 | Minus |
X | 23542271 | X | 1879412..1879490 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:14:42 has no hits.
BO16032.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:27 Download gff for
BO16032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-RA | 85..380 | 9..304 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:13:21 Download gff for
BO16032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-RA | 91..378 | 17..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:29 Download gff for
BO16032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-RA | 93..380 | 17..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:02 Download gff for
BO16032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14818-RA | 91..378 | 17..306 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:02 Download gff for
BO16032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1879140..1879350 | 96..306 | 99 | <- | Minus |
X | 1879412..1879490 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:13:21 Download gff for
BO16032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1773173..1773383 | 96..306 | 99 | <- | Minus |
arm_X | 1773445..1773523 | 17..95 | 100 | | Minus |
BO16032.pep Sequence
Translation from 16 to 322
> BO16032.pep
MSPKNNHDPSSSGDSGNTNVQEADLQEMEDVNNSLDALSCALDAVEQRTD
DIMSQLRELLNSNREIRRLIAEENDNAPESGDDNMDGQAGSEAAPKASFL
DH
BO16032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14818-PB | 96 | CG14818-PB | 1..96 | 1..96 | 489 | 100 | Plus |
CG14818-PA | 96 | CG14818-PA | 1..96 | 1..96 | 489 | 100 | Plus |