Clone BO16034 Report

Search the DGRC for BO16034

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCpr60D-RA
Protein status:BO16034.pep: Imported from assembly
Sequenced Size:313

Clone Sequence Records

BO16034.3prime Sequence

311 bp (311 high quality bases) assembled on 2006-06-16

> BO16034.3prime
ATGGTCTAGAAAGCTTGCCTCTTCAACCTTCGGATGGAAGCCGGTTGCAT
CTGCGGTGTAAGTCACGCGAATTTGCTTGCCATCTTCGCCGGGAAGGAAG
TATTCGCCCTGGATGCCGTTCACATTGCCTTGAGCTTTCACTTGGATCCC
ATTGCTGACCGTGATCTCATGCTGGAACTGCCCAGCTCCATCCAGGTTCT
GGCGGTTCTCCGACTTCAGAAGTTGCGCCTGCAGATCCTCCTCACTGCAG
CTGGCCAAAACGACGAAAAGGGCAAAGATAAGGCTATATTTCAGCATGTC
GACTGATAACT

BO16034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30163-PA 282 CG30163-RA 1..279 297..19 1395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-RB 581 CG30163-RB 19..297 297..19 1395 100 Minus
Cpr60D-RA 494 CG30163-RA 105..383 297..19 1395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662966..24663232 19..285 1335 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:01:45 has no hits.

BO16034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:57 Download gff for BO16034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30163-PA 1..282 16..297 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:16:58 Download gff for BO16034.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..383 19..297 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:27 Download gff for BO16034.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..383 19..297 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:27 Download gff for BO16034.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24662966..24663232 19..285 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:16:58 Download gff for BO16034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20550489..20550755 19..285 100 <- Plus

BO16034.5prime Sequence

311 bp (311 high quality bases) assembled on 2006-06-16

> BO16034.5prime
GAAGTTATCAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCG
TCGTTTTGGCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAG
TCGGAGAACCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGAT
CACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCA
TCCAGGGCGAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTG
ACTTACACCGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGGCAAG
CTTTCTAGACC

BO16034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30163-PA 282 CG30163-RA 1..279 17..295 1395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-RB 581 CG30163-RB 19..297 17..295 1395 100 Plus
Cpr60D-RA 494 CG30163-RA 105..383 17..295 1395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662966..24663232 295..29 1335 100 Minus
Blast to na_te.dros performed on 2015-02-02 14:42:26 has no hits.

BO16034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:59 Download gff for BO16034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30163-PA 1..282 17..298 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:54:00 Download gff for BO16034.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..383 17..295 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:23:50 Download gff for BO16034.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..383 17..295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:23:50 Download gff for BO16034.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24662966..24663232 29..295 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:54:00 Download gff for BO16034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20550489..20550755 29..295 100 <- Minus

BO16034.complete Sequence

313 bp assembled on 2008-08-15

GenBank Submission: FJ633678

> BO16034.complete
GAAGTTATCAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCG
TCGTTTTGGCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAG
TCGGAGAACCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGAT
CACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCA
TCCAGGGCGAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTG
ACTTACACCGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGGCAAG
CTTTCTAGACCAT

BO16034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-RB 282 CG30163-PB 1..279 17..295 1395 100 Plus
Cpr60D-RA 282 CG30163-PA 1..279 17..295 1395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-RB 581 CG30163-RB 19..297 17..295 1395 100 Plus
Cpr60D-RA 494 CG30163-RA 105..383 17..295 1395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662966..24663232 295..29 1335 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:16:44 has no hits.

BO16034.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:13:10 Download gff for BO16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..383 17..295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:02 Download gff for BO16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..383 17..297 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:01 Download gff for BO16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..383 17..297 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:43 Download gff for BO16034.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr60D-RA 105..383 17..297 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:43 Download gff for BO16034.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24662962..24663232 29..297 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:02 Download gff for BO16034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20550485..20550755 29..297 99 <- Minus

BO16034.pep Sequence

Translation from 16 to 313

> BO16034.pep
MLKYSLIFALFVVLASCSEEDLQAQLLKSENRQNLDGAGQFQHEITVSNG
IQVKAQGNVNGIQGEYFLPGEDGKQIRVTYTADATGFHPKVEEASFLDH

BO16034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr60D-PB 93 CG30163-PB 1..93 1..93 475 100 Plus
Cpr60D-PA 93 CG30163-PA 1..93 1..93 475 100 Plus
Edg78E-PB 122 CG7673-PB 2..87 4..89 150 32.6 Plus
Edg78E-PA 122 CG7673-PA 2..87 4..89 150 32.6 Plus
Cpr78Cc-PA 119 CG7658-PA 1..91 1..90 134 34.1 Plus