Clone Sequence Records
BO16034.3prime Sequence
311 bp (311 high quality bases) assembled on 2006-06-16
> BO16034.3prime
ATGGTCTAGAAAGCTTGCCTCTTCAACCTTCGGATGGAAGCCGGTTGCAT
CTGCGGTGTAAGTCACGCGAATTTGCTTGCCATCTTCGCCGGGAAGGAAG
TATTCGCCCTGGATGCCGTTCACATTGCCTTGAGCTTTCACTTGGATCCC
ATTGCTGACCGTGATCTCATGCTGGAACTGCCCAGCTCCATCCAGGTTCT
GGCGGTTCTCCGACTTCAGAAGTTGCGCCTGCAGATCCTCCTCACTGCAG
CTGGCCAAAACGACGAAAAGGGCAAAGATAAGGCTATATTTCAGCATGTC
GACTGATAACT
BO16034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30163-PA | 282 | CG30163-RA | 1..279 | 297..19 | 1395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-RB | 581 | CG30163-RB | 19..297 | 297..19 | 1395 | 100 | Minus |
Cpr60D-RA | 494 | CG30163-RA | 105..383 | 297..19 | 1395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662966..24663232 | 19..285 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:01:45 has no hits.
BO16034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:57 Download gff for
BO16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30163-PA | 1..282 | 16..297 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:16:58 Download gff for
BO16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..383 | 19..297 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:27 Download gff for
BO16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..383 | 19..297 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:27 Download gff for
BO16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24662966..24663232 | 19..285 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:16:58 Download gff for
BO16034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20550489..20550755 | 19..285 | 100 | <- | Plus |
BO16034.5prime Sequence
311 bp (311 high quality bases) assembled on 2006-06-16
> BO16034.5prime
GAAGTTATCAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCG
TCGTTTTGGCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAG
TCGGAGAACCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGAT
CACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCA
TCCAGGGCGAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTG
ACTTACACCGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGGCAAG
CTTTCTAGACC
BO16034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30163-PA | 282 | CG30163-RA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-RB | 581 | CG30163-RB | 19..297 | 17..295 | 1395 | 100 | Plus |
Cpr60D-RA | 494 | CG30163-RA | 105..383 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662966..24663232 | 295..29 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 14:42:26 has no hits.
BO16034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:59 Download gff for
BO16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30163-PA | 1..282 | 17..298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:54:00 Download gff for
BO16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..383 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:23:50 Download gff for
BO16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..383 | 17..295 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:23:50 Download gff for
BO16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24662966..24663232 | 29..295 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:54:00 Download gff for
BO16034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20550489..20550755 | 29..295 | 100 | <- | Minus |
BO16034.complete Sequence
313 bp assembled on 2008-08-15
GenBank Submission: FJ633678
> BO16034.complete
GAAGTTATCAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCG
TCGTTTTGGCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAG
TCGGAGAACCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGAT
CACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCA
TCCAGGGCGAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTG
ACTTACACCGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGGCAAG
CTTTCTAGACCAT
BO16034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-RB | 282 | CG30163-PB | 1..279 | 17..295 | 1395 | 100 | Plus |
Cpr60D-RA | 282 | CG30163-PA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-RB | 581 | CG30163-RB | 19..297 | 17..295 | 1395 | 100 | Plus |
Cpr60D-RA | 494 | CG30163-RA | 105..383 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662966..24663232 | 295..29 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:16:44 has no hits.
BO16034.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:13:10 Download gff for
BO16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..383 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:02 Download gff for
BO16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..383 | 17..297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:01 Download gff for
BO16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..383 | 17..297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:43 Download gff for
BO16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr60D-RA | 105..383 | 17..297 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:43 Download gff for
BO16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24662962..24663232 | 29..297 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:02 Download gff for
BO16034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20550485..20550755 | 29..297 | 99 | <- | Minus |
BO16034.pep Sequence
Translation from 16 to 313
> BO16034.pep
MLKYSLIFALFVVLASCSEEDLQAQLLKSENRQNLDGAGQFQHEITVSNG
IQVKAQGNVNGIQGEYFLPGEDGKQIRVTYTADATGFHPKVEEASFLDH
BO16034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr60D-PB | 93 | CG30163-PB | 1..93 | 1..93 | 475 | 100 | Plus |
Cpr60D-PA | 93 | CG30163-PA | 1..93 | 1..93 | 475 | 100 | Plus |
Edg78E-PB | 122 | CG7673-PB | 2..87 | 4..89 | 150 | 32.6 | Plus |
Edg78E-PA | 122 | CG7673-PA | 2..87 | 4..89 | 150 | 32.6 | Plus |
Cpr78Cc-PA | 119 | CG7658-PA | 1..91 | 1..90 | 134 | 34.1 | Plus |