Clone BO16038 Report

Search the DGRC for BO16038

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG12519-RA
Protein status:BO16038.pep: Imported from assembly
Sequenced Size:427

Clone Sequence Records

BO16038.3prime Sequence

425 bp (425 high quality bases) assembled on 2006-06-16

> BO16038.3prime
ATGGTCTAGAAAGCTTGCGATAAGGAGCGGTGCAGATGGAACGGCGTAGC
TCAGTGGTGCGGAGTAAGCCAAAGGCGAGGAGTAGGCCAGTGGTGCAGCT
AGAGGAGTAGCCGCGTACTTCGCCACCACAGGAGCAGCCAATGGAGCAGC
AGCGTACTTGGCCACCACAGGAGCGGCAACGGGAGCAATCACAGGAGCAG
CGGCGATTCCATTGTAGTTCCTGGCGATAACCTGGCTACTGGTGGCGGTC
ACAACTGGAGCGGGAGCAGCTACCACGGCAGCAGGAGCTGAGTAAGCCAG
AGGAGCAGAGTAAGCCAGAGGAGCAGTGTAAGCAAGGGGAGCACCCAGAA
GTCCAGGCTTGGCAGCAGCGCAGGCAACGATAGCCAGAATAACAACGGCG
GATTTGAACATGTCGACTGATAACT

BO16038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-PA 396 CG12519-RA 1..393 411..19 1965 100 Minus
CG18294-PA 426 CG18294-RA 1..299 411..113 1445 99.3 Minus
CG14096-PA 369 CG14096-RA 1..269 411..143 1295 99.2 Minus
CG32213-PA 465 CG32213-RA 154..300 315..169 585 95.9 Minus
CG32208-PA 465 825-Oak-RA 154..300 315..169 585 95.9 Minus
CG32214-PA 426 CG32214-RA 154..300 315..169 585 95.9 Minus
CG33255-PA 768 CG33255-RA 229..387 375..217 570 94.3 Minus
CG32213-PA 465 CG32213-RA 307..437 174..44 480 94.6 Minus
CG32208-PA 465 825-Oak-RA 307..437 174..44 480 94.6 Minus
CG32214-PA 426 CG32214-RA 291..400 151..42 450 96.3 Minus
CG32213-PA 465 CG32213-RA 107..186 380..301 375 98.7 Minus
CG32208-PA 465 825-Oak-RA 107..186 380..301 375 98.7 Minus
CG32214-PA 426 CG32214-RA 107..186 380..301 375 98.7 Minus
CG32207-PA 255 CG32207-RA 182..252 89..19 280 95.7 Minus
CG18294-PA 426 CG18294-RA 274..338 177..113 275 96.9 Minus
CG33255-PA 768 CG33255-RA 566..645 269..190 250 92.5 Minus
CG32212-PA 336 CG32212-RA 174..258 229..145 225 90.5 Minus
CG32213-PA 465 CG32213-RA 291..347 151..95 210 94.7 Minus
CG32208-PA 465 825-Oak-RA 291..347 151..95 210 94.7 Minus
CG18294-PA 426 CG18294-RA 316..353 174..137 165 97.3 Minus
CG33255-PA 768 CG33255-RA 637..666 174..145 150 100 Minus
CG32212-PA 336 CG32212-RA 64..113 348..299 150 92 Minus
CG33255-PA 768 CG33255-RA 140..172 245..277 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-RB 600 CG12519-RB 53..445 411..19 1965 100 Minus
CG12519-RA 507 CG12519-RA 53..445 411..19 1965 100 Minus
CG18294-RA 507 CG18294-RA 55..362 411..104 1480 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19472610..19472990 399..19 1905 100 Minus
3L 28110227 3L 19475162..19475457 104..399 1420 98.6 Plus
3L 28110227 3L 19466706..19466962 143..399 1255 99.2 Plus
3L 28110227 3L 19471757..19472096 44..389 1060 87.7 Plus
3L 28110227 3L 19475971..19476310 389..44 1060 87.7 Minus
3L 28110227 3L 19478373..19478568 379..184 740 91.8 Minus
3L 28110227 3L 19423849..19424044 379..184 725 91.3 Minus
3L 28110227 3L 19467481..19467687 389..165 700 88.4 Minus
3L 28110227 3L 19488045..19488278 379..137 610 84.4 Minus
3L 28110227 3L 19467674..19467806 151..19 530 93.2 Minus
3L 28110227 3L 19422979..19423224 19..281 375 77.9 Plus
3L 28110227 3L 19486803..19486900 20..118 355 92.9 Plus
3L 28110227 3L 19477672..19477760 19..107 340 92.1 Plus
3L 28110227 3L 19475123..19475206 104..187 315 91.7 Plus
3L 28110227 3L 19424757..19424836 269..190 310 92.5 Minus
3L 28110227 3L 19471847..19471903 95..151 240 94.7 Plus
3L 28110227 3L 19476164..19476220 151..95 240 94.7 Minus
3L 28110227 3L 19464433..19464518 185..270 220 83.7 Plus
3L 28110227 3L 19475117..19475167 137..187 180 90.2 Plus
Blast to na_te.dros performed 2015-02-12 10:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 251..326 147 69.7 Plus

BO16038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:01 Download gff for BO16038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-PA 1..396 15..411 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:34:57 Download gff for BO16038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 47..451 11..421 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:16 Download gff for BO16038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 47..451 11..421 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:16 Download gff for BO16038.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19472610..19472996 11..399 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:34:57 Download gff for BO16038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19465710..19466096 11..399 98   Minus

BO16038.5prime Sequence

425 bp (425 high quality bases) assembled on 2006-06-16

> BO16038.5prime
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGT
GGTGGCGAAGTACGCGGCTACTCCTCTAGCTGCACCACTGGCCTACTCCT
CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCG
CTCCTTATCGCAAGCTTTCTAGACC

BO16038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-PA 396 CG12519-RA 1..393 17..409 1965 100 Plus
CG18294-PA 426 CG18294-RA 1..299 17..315 1445 99.3 Plus
CG14096-PA 369 CG14096-RA 1..269 17..285 1295 99.2 Plus
CG32213-PA 465 CG32213-RA 154..300 113..259 585 95.9 Plus
CG32208-PA 465 825-Oak-RA 154..300 113..259 585 95.9 Plus
CG32214-PA 426 CG32214-RA 154..300 113..259 585 95.9 Plus
CG33255-PA 768 CG33255-RA 229..387 53..211 570 94.3 Plus
CG32213-PA 465 CG32213-RA 307..437 254..384 480 94.6 Plus
CG32208-PA 465 825-Oak-RA 307..437 254..384 480 94.6 Plus
CG32214-PA 426 CG32214-RA 291..400 277..386 450 96.3 Plus
CG32213-PA 465 CG32213-RA 107..186 48..127 375 98.7 Plus
CG32208-PA 465 825-Oak-RA 107..186 48..127 375 98.7 Plus
CG32214-PA 426 CG32214-RA 107..186 48..127 375 98.7 Plus
CG32207-PA 255 CG32207-RA 182..252 339..409 280 95.7 Plus
CG18294-PA 426 CG18294-RA 274..338 251..315 275 96.9 Plus
CG33255-PA 768 CG33255-RA 566..645 159..238 250 92.5 Plus
CG32212-PA 336 CG32212-RA 174..258 199..283 225 90.5 Plus
CG32213-PA 465 CG32213-RA 291..347 277..333 210 94.7 Plus
CG32208-PA 465 825-Oak-RA 291..347 277..333 210 94.7 Plus
CG18294-PA 426 CG18294-RA 316..353 254..291 165 97.3 Plus
CG33255-PA 768 CG33255-RA 637..666 254..283 150 100 Plus
CG32212-PA 336 CG32212-RA 64..113 80..129 150 92 Plus
CG33255-PA 768 CG33255-RA 140..172 183..151 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-RB 600 CG12519-RB 53..445 17..409 1965 100 Plus
CG12519-RA 507 CG12519-RA 53..445 17..409 1965 100 Plus
CG18294-RA 507 CG18294-RA 55..362 17..324 1480 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19472610..19472990 29..409 1905 100 Plus
3L 28110227 3L 19475162..19475457 324..29 1420 98.6 Minus
3L 28110227 3L 19466706..19466962 285..29 1255 99.2 Minus
3L 28110227 3L 19471757..19472096 384..39 1060 87.7 Minus
3L 28110227 3L 19475971..19476310 39..384 1060 87.7 Plus
3L 28110227 3L 19478373..19478568 49..244 740 91.8 Plus
3L 28110227 3L 19423849..19424044 49..244 725 91.3 Plus
3L 28110227 3L 19467481..19467687 39..263 700 88.4 Plus
3L 28110227 3L 19488045..19488278 49..291 610 84.4 Plus
3L 28110227 3L 19467674..19467806 277..409 530 93.2 Plus
3L 28110227 3L 19422979..19423224 409..147 375 77.9 Minus
3L 28110227 3L 19486803..19486900 408..310 355 92.9 Minus
3L 28110227 3L 19477672..19477760 409..321 340 92.1 Minus
3L 28110227 3L 19475123..19475206 324..241 315 91.7 Minus
3L 28110227 3L 19424757..19424836 159..238 310 92.5 Plus
3L 28110227 3L 19471847..19471903 333..277 240 94.7 Minus
3L 28110227 3L 19476164..19476220 277..333 240 94.7 Plus
3L 28110227 3L 19464433..19464518 243..158 220 83.7 Minus
3L 28110227 3L 19475117..19475167 291..241 180 90.2 Minus
Blast to na_te.dros performed 2015-02-11 16:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 177..102 147 69.7 Minus

BO16038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:02 Download gff for BO16038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-PA 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:17:09 Download gff for BO16038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 47..451 7..417 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:36 Download gff for BO16038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 47..451 7..417 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:36 Download gff for BO16038.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19472610..19472996 29..417 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:17:09 Download gff for BO16038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19465710..19466096 29..417 98   Plus

BO16038.complete Sequence

427 bp assembled on 2008-08-15

GenBank Submission: FJ633681

> BO16038.complete
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGT
GGTGGCGAAGTACGCGGCTACTCCTCTAGCTGCACCACTGGCCTACTCCT
CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCG
CTCCTTATCGCAAGCTTTCTAGACCAT

BO16038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-RB 396 CG12519-PB 1..393 17..409 1965 100 Plus
CG12519-RA 396 CG12519-PA 1..393 17..409 1965 100 Plus
CG18294-RA 426 CG18294-PA 1..308 17..324 1480 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-RB 600 CG12519-RB 53..445 17..409 1965 100 Plus
CG12519-RA 507 CG12519-RA 53..445 17..409 1965 100 Plus
CG18294-RA 507 CG18294-RA 55..362 17..324 1480 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19472610..19472990 29..409 1905 100 Plus
3L 28110227 3L 19475162..19475457 324..29 1420 98.6 Minus
3L 28110227 3L 19466706..19466962 285..29 1255 99.2 Minus
3L 28110227 3L 19471757..19472096 384..39 1060 87.7 Minus
3L 28110227 3L 19475971..19476310 39..384 1060 87.7 Plus
3L 28110227 3L 19478373..19478568 49..244 740 91.8 Plus
3L 28110227 3L 19423849..19424044 49..244 725 91.3 Plus
3L 28110227 3L 19467481..19467687 39..263 700 88.4 Plus
3L 28110227 3L 19488045..19488278 49..291 610 84.4 Plus
3L 28110227 3L 19467674..19467806 277..409 530 93.2 Plus
3L 28110227 3L 19422979..19423224 409..147 375 77.9 Minus
3L 28110227 3L 19486803..19486900 408..310 355 92.9 Minus
3L 28110227 3L 19477672..19477760 409..321 340 92.1 Minus
3L 28110227 3L 19475123..19475206 324..241 315 91.7 Minus
3L 28110227 3L 19424757..19424836 159..238 310 92.5 Plus
3L 28110227 3L 19471847..19471903 333..277 240 94.7 Minus
3L 28110227 3L 19476164..19476220 277..333 240 94.7 Plus
3L 28110227 3L 19464433..19464518 243..158 220 83.7 Minus
3L 28110227 3L 19475117..19475167 291..241 180 90.2 Minus
Blast to na_te.dros performed 2014-11-28 00:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 177..102 147 69.7 Minus

BO16038.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:28 Download gff for BO16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 45..449 7..417 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:21 Download gff for BO16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 58..445 22..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:19 Download gff for BO16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 56..443 22..411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:55 Download gff for BO16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 58..445 22..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:55 Download gff for BO16038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19472610..19472990 29..411 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:21 Download gff for BO16038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19465710..19466090 29..411 99   Plus

BO16038.pep Sequence

Translation from 16 to 427

> BO16038.pep
MFKSAVVILAIVACAAAKPGLLGAPLAYTAPLAYSAPLAYSAPAAVVAAP
APVVTATSSQVIARNYNGIAAAPVIAPVAAPVVAKYAAAPLAAPVVAKYA
ATPLAAPLAYSSPLAYSAPLSYAVPSAPLLIASFLDH

BO16038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12519-PB 131 CG12519-PB 1..131 1..131 633 100 Plus
CG12519-PA 131 CG12519-PA 1..131 1..131 633 100 Plus
CG18294-PA 141 CG18294-PA 1..141 1..131 560 85.8 Plus
825-Oak-PB 129 CG32208-PB 1..129 1..131 528 85.9 Plus
CG32213-PB 129 CG32213-PB 1..129 1..131 525 85.2 Plus