Clone Sequence Records
BO16038.3prime Sequence
425 bp (425 high quality bases) assembled on 2006-06-16
> BO16038.3prime
ATGGTCTAGAAAGCTTGCGATAAGGAGCGGTGCAGATGGAACGGCGTAGC
TCAGTGGTGCGGAGTAAGCCAAAGGCGAGGAGTAGGCCAGTGGTGCAGCT
AGAGGAGTAGCCGCGTACTTCGCCACCACAGGAGCAGCCAATGGAGCAGC
AGCGTACTTGGCCACCACAGGAGCGGCAACGGGAGCAATCACAGGAGCAG
CGGCGATTCCATTGTAGTTCCTGGCGATAACCTGGCTACTGGTGGCGGTC
ACAACTGGAGCGGGAGCAGCTACCACGGCAGCAGGAGCTGAGTAAGCCAG
AGGAGCAGAGTAAGCCAGAGGAGCAGTGTAAGCAAGGGGAGCACCCAGAA
GTCCAGGCTTGGCAGCAGCGCAGGCAACGATAGCCAGAATAACAACGGCG
GATTTGAACATGTCGACTGATAACT
BO16038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-PA | 396 | CG12519-RA | 1..393 | 411..19 | 1965 | 100 | Minus |
CG18294-PA | 426 | CG18294-RA | 1..299 | 411..113 | 1445 | 99.3 | Minus |
CG14096-PA | 369 | CG14096-RA | 1..269 | 411..143 | 1295 | 99.2 | Minus |
CG32213-PA | 465 | CG32213-RA | 154..300 | 315..169 | 585 | 95.9 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 154..300 | 315..169 | 585 | 95.9 | Minus |
CG32214-PA | 426 | CG32214-RA | 154..300 | 315..169 | 585 | 95.9 | Minus |
CG33255-PA | 768 | CG33255-RA | 229..387 | 375..217 | 570 | 94.3 | Minus |
CG32213-PA | 465 | CG32213-RA | 307..437 | 174..44 | 480 | 94.6 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 307..437 | 174..44 | 480 | 94.6 | Minus |
CG32214-PA | 426 | CG32214-RA | 291..400 | 151..42 | 450 | 96.3 | Minus |
CG32213-PA | 465 | CG32213-RA | 107..186 | 380..301 | 375 | 98.7 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 107..186 | 380..301 | 375 | 98.7 | Minus |
CG32214-PA | 426 | CG32214-RA | 107..186 | 380..301 | 375 | 98.7 | Minus |
CG32207-PA | 255 | CG32207-RA | 182..252 | 89..19 | 280 | 95.7 | Minus |
CG18294-PA | 426 | CG18294-RA | 274..338 | 177..113 | 275 | 96.9 | Minus |
CG33255-PA | 768 | CG33255-RA | 566..645 | 269..190 | 250 | 92.5 | Minus |
CG32212-PA | 336 | CG32212-RA | 174..258 | 229..145 | 225 | 90.5 | Minus |
CG32213-PA | 465 | CG32213-RA | 291..347 | 151..95 | 210 | 94.7 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 291..347 | 151..95 | 210 | 94.7 | Minus |
CG18294-PA | 426 | CG18294-RA | 316..353 | 174..137 | 165 | 97.3 | Minus |
CG33255-PA | 768 | CG33255-RA | 637..666 | 174..145 | 150 | 100 | Minus |
CG32212-PA | 336 | CG32212-RA | 64..113 | 348..299 | 150 | 92 | Minus |
CG33255-PA | 768 | CG33255-RA | 140..172 | 245..277 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 600 | CG12519-RB | 53..445 | 411..19 | 1965 | 100 | Minus |
CG12519-RA | 507 | CG12519-RA | 53..445 | 411..19 | 1965 | 100 | Minus |
CG18294-RA | 507 | CG18294-RA | 55..362 | 411..104 | 1480 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19472610..19472990 | 399..19 | 1905 | 100 | Minus |
3L | 28110227 | 3L | 19475162..19475457 | 104..399 | 1420 | 98.6 | Plus |
3L | 28110227 | 3L | 19466706..19466962 | 143..399 | 1255 | 99.2 | Plus |
3L | 28110227 | 3L | 19471757..19472096 | 44..389 | 1060 | 87.7 | Plus |
3L | 28110227 | 3L | 19475971..19476310 | 389..44 | 1060 | 87.7 | Minus |
3L | 28110227 | 3L | 19478373..19478568 | 379..184 | 740 | 91.8 | Minus |
3L | 28110227 | 3L | 19423849..19424044 | 379..184 | 725 | 91.3 | Minus |
3L | 28110227 | 3L | 19467481..19467687 | 389..165 | 700 | 88.4 | Minus |
3L | 28110227 | 3L | 19488045..19488278 | 379..137 | 610 | 84.4 | Minus |
3L | 28110227 | 3L | 19467674..19467806 | 151..19 | 530 | 93.2 | Minus |
3L | 28110227 | 3L | 19422979..19423224 | 19..281 | 375 | 77.9 | Plus |
3L | 28110227 | 3L | 19486803..19486900 | 20..118 | 355 | 92.9 | Plus |
3L | 28110227 | 3L | 19477672..19477760 | 19..107 | 340 | 92.1 | Plus |
3L | 28110227 | 3L | 19475123..19475206 | 104..187 | 315 | 91.7 | Plus |
3L | 28110227 | 3L | 19424757..19424836 | 269..190 | 310 | 92.5 | Minus |
3L | 28110227 | 3L | 19471847..19471903 | 95..151 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 19476164..19476220 | 151..95 | 240 | 94.7 | Minus |
3L | 28110227 | 3L | 19464433..19464518 | 185..270 | 220 | 83.7 | Plus |
3L | 28110227 | 3L | 19475117..19475167 | 137..187 | 180 | 90.2 | Plus |
Blast to na_te.dros performed 2015-02-12 10:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 251..326 | 147 | 69.7 | Plus |
BO16038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:01 Download gff for
BO16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-PA | 1..396 | 15..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:34:57 Download gff for
BO16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 47..451 | 11..421 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:16 Download gff for
BO16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 47..451 | 11..421 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:16 Download gff for
BO16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19472610..19472996 | 11..399 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:34:57 Download gff for
BO16038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19465710..19466096 | 11..399 | 98 | | Minus |
BO16038.5prime Sequence
425 bp (425 high quality bases) assembled on 2006-06-16
> BO16038.5prime
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGT
GGTGGCGAAGTACGCGGCTACTCCTCTAGCTGCACCACTGGCCTACTCCT
CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCG
CTCCTTATCGCAAGCTTTCTAGACC
BO16038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-PA | 396 | CG12519-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
CG18294-PA | 426 | CG18294-RA | 1..299 | 17..315 | 1445 | 99.3 | Plus |
CG14096-PA | 369 | CG14096-RA | 1..269 | 17..285 | 1295 | 99.2 | Plus |
CG32213-PA | 465 | CG32213-RA | 154..300 | 113..259 | 585 | 95.9 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 154..300 | 113..259 | 585 | 95.9 | Plus |
CG32214-PA | 426 | CG32214-RA | 154..300 | 113..259 | 585 | 95.9 | Plus |
CG33255-PA | 768 | CG33255-RA | 229..387 | 53..211 | 570 | 94.3 | Plus |
CG32213-PA | 465 | CG32213-RA | 307..437 | 254..384 | 480 | 94.6 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 307..437 | 254..384 | 480 | 94.6 | Plus |
CG32214-PA | 426 | CG32214-RA | 291..400 | 277..386 | 450 | 96.3 | Plus |
CG32213-PA | 465 | CG32213-RA | 107..186 | 48..127 | 375 | 98.7 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 107..186 | 48..127 | 375 | 98.7 | Plus |
CG32214-PA | 426 | CG32214-RA | 107..186 | 48..127 | 375 | 98.7 | Plus |
CG32207-PA | 255 | CG32207-RA | 182..252 | 339..409 | 280 | 95.7 | Plus |
CG18294-PA | 426 | CG18294-RA | 274..338 | 251..315 | 275 | 96.9 | Plus |
CG33255-PA | 768 | CG33255-RA | 566..645 | 159..238 | 250 | 92.5 | Plus |
CG32212-PA | 336 | CG32212-RA | 174..258 | 199..283 | 225 | 90.5 | Plus |
CG32213-PA | 465 | CG32213-RA | 291..347 | 277..333 | 210 | 94.7 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 291..347 | 277..333 | 210 | 94.7 | Plus |
CG18294-PA | 426 | CG18294-RA | 316..353 | 254..291 | 165 | 97.3 | Plus |
CG33255-PA | 768 | CG33255-RA | 637..666 | 254..283 | 150 | 100 | Plus |
CG32212-PA | 336 | CG32212-RA | 64..113 | 80..129 | 150 | 92 | Plus |
CG33255-PA | 768 | CG33255-RA | 140..172 | 183..151 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 600 | CG12519-RB | 53..445 | 17..409 | 1965 | 100 | Plus |
CG12519-RA | 507 | CG12519-RA | 53..445 | 17..409 | 1965 | 100 | Plus |
CG18294-RA | 507 | CG18294-RA | 55..362 | 17..324 | 1480 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19472610..19472990 | 29..409 | 1905 | 100 | Plus |
3L | 28110227 | 3L | 19475162..19475457 | 324..29 | 1420 | 98.6 | Minus |
3L | 28110227 | 3L | 19466706..19466962 | 285..29 | 1255 | 99.2 | Minus |
3L | 28110227 | 3L | 19471757..19472096 | 384..39 | 1060 | 87.7 | Minus |
3L | 28110227 | 3L | 19475971..19476310 | 39..384 | 1060 | 87.7 | Plus |
3L | 28110227 | 3L | 19478373..19478568 | 49..244 | 740 | 91.8 | Plus |
3L | 28110227 | 3L | 19423849..19424044 | 49..244 | 725 | 91.3 | Plus |
3L | 28110227 | 3L | 19467481..19467687 | 39..263 | 700 | 88.4 | Plus |
3L | 28110227 | 3L | 19488045..19488278 | 49..291 | 610 | 84.4 | Plus |
3L | 28110227 | 3L | 19467674..19467806 | 277..409 | 530 | 93.2 | Plus |
3L | 28110227 | 3L | 19422979..19423224 | 409..147 | 375 | 77.9 | Minus |
3L | 28110227 | 3L | 19486803..19486900 | 408..310 | 355 | 92.9 | Minus |
3L | 28110227 | 3L | 19477672..19477760 | 409..321 | 340 | 92.1 | Minus |
3L | 28110227 | 3L | 19475123..19475206 | 324..241 | 315 | 91.7 | Minus |
3L | 28110227 | 3L | 19424757..19424836 | 159..238 | 310 | 92.5 | Plus |
3L | 28110227 | 3L | 19471847..19471903 | 333..277 | 240 | 94.7 | Minus |
3L | 28110227 | 3L | 19476164..19476220 | 277..333 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 19464433..19464518 | 243..158 | 220 | 83.7 | Minus |
3L | 28110227 | 3L | 19475117..19475167 | 291..241 | 180 | 90.2 | Minus |
Blast to na_te.dros performed 2015-02-11 16:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 177..102 | 147 | 69.7 | Minus |
BO16038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:02 Download gff for
BO16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-PA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:17:09 Download gff for
BO16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 47..451 | 7..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:36 Download gff for
BO16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 47..451 | 7..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:36 Download gff for
BO16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19472610..19472996 | 29..417 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:17:09 Download gff for
BO16038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19465710..19466096 | 29..417 | 98 | | Plus |
BO16038.complete Sequence
427 bp assembled on 2008-08-15
GenBank Submission: FJ633681
> BO16038.complete
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGT
GGTGGCGAAGTACGCGGCTACTCCTCTAGCTGCACCACTGGCCTACTCCT
CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCG
CTCCTTATCGCAAGCTTTCTAGACCAT
BO16038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 396 | CG12519-PB | 1..393 | 17..409 | 1965 | 100 | Plus |
CG12519-RA | 396 | CG12519-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
CG18294-RA | 426 | CG18294-PA | 1..308 | 17..324 | 1480 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 600 | CG12519-RB | 53..445 | 17..409 | 1965 | 100 | Plus |
CG12519-RA | 507 | CG12519-RA | 53..445 | 17..409 | 1965 | 100 | Plus |
CG18294-RA | 507 | CG18294-RA | 55..362 | 17..324 | 1480 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19472610..19472990 | 29..409 | 1905 | 100 | Plus |
3L | 28110227 | 3L | 19475162..19475457 | 324..29 | 1420 | 98.6 | Minus |
3L | 28110227 | 3L | 19466706..19466962 | 285..29 | 1255 | 99.2 | Minus |
3L | 28110227 | 3L | 19471757..19472096 | 384..39 | 1060 | 87.7 | Minus |
3L | 28110227 | 3L | 19475971..19476310 | 39..384 | 1060 | 87.7 | Plus |
3L | 28110227 | 3L | 19478373..19478568 | 49..244 | 740 | 91.8 | Plus |
3L | 28110227 | 3L | 19423849..19424044 | 49..244 | 725 | 91.3 | Plus |
3L | 28110227 | 3L | 19467481..19467687 | 39..263 | 700 | 88.4 | Plus |
3L | 28110227 | 3L | 19488045..19488278 | 49..291 | 610 | 84.4 | Plus |
3L | 28110227 | 3L | 19467674..19467806 | 277..409 | 530 | 93.2 | Plus |
3L | 28110227 | 3L | 19422979..19423224 | 409..147 | 375 | 77.9 | Minus |
3L | 28110227 | 3L | 19486803..19486900 | 408..310 | 355 | 92.9 | Minus |
3L | 28110227 | 3L | 19477672..19477760 | 409..321 | 340 | 92.1 | Minus |
3L | 28110227 | 3L | 19475123..19475206 | 324..241 | 315 | 91.7 | Minus |
3L | 28110227 | 3L | 19424757..19424836 | 159..238 | 310 | 92.5 | Plus |
3L | 28110227 | 3L | 19471847..19471903 | 333..277 | 240 | 94.7 | Minus |
3L | 28110227 | 3L | 19476164..19476220 | 277..333 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 19464433..19464518 | 243..158 | 220 | 83.7 | Minus |
3L | 28110227 | 3L | 19475117..19475167 | 291..241 | 180 | 90.2 | Minus |
Blast to na_te.dros performed 2014-11-28 00:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 177..102 | 147 | 69.7 | Minus |
BO16038.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:28 Download gff for
BO16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 45..449 | 7..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:21 Download gff for
BO16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 58..445 | 22..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:19 Download gff for
BO16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 56..443 | 22..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:55 Download gff for
BO16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 58..445 | 22..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:55 Download gff for
BO16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19472610..19472990 | 29..411 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:21 Download gff for
BO16038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19465710..19466090 | 29..411 | 99 | | Plus |
BO16038.pep Sequence
Translation from 16 to 427
> BO16038.pep
MFKSAVVILAIVACAAAKPGLLGAPLAYTAPLAYSAPLAYSAPAAVVAAP
APVVTATSSQVIARNYNGIAAAPVIAPVAAPVVAKYAAAPLAAPVVAKYA
ATPLAAPLAYSSPLAYSAPLSYAVPSAPLLIASFLDH
BO16038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-PB | 131 | CG12519-PB | 1..131 | 1..131 | 633 | 100 | Plus |
CG12519-PA | 131 | CG12519-PA | 1..131 | 1..131 | 633 | 100 | Plus |
CG18294-PA | 141 | CG18294-PA | 1..141 | 1..131 | 560 | 85.8 | Plus |
825-Oak-PB | 129 | CG32208-PB | 1..129 | 1..131 | 528 | 85.9 | Plus |
CG32213-PB | 129 | CG32213-PB | 1..129 | 1..131 | 525 | 85.2 | Plus |