Clone Sequence Records
BO16040.3prime Sequence
323 bp (323 high quality bases) assembled on 2006-06-16
> BO16040.3prime
ATGGTCTAGAAAGCTTGCGTCGGTTGGGTTTTGGATGACAATCAGGATGA
AGTCCTTGTCGGGTGCCACCATGATCTCGTGCTTCTTGGATCGCACCCGC
AGGAATGTCATGTCGTTGGAAGGATCCAAGTCCCTCACCACACTTCGTGC
CTTGTCCGCCAGCTGACTCATTAGGCCAGCGTACTGAACGGTGGTAGTGT
TGTCCAGCGTGGATTTGACCGGAATACCTTCATTGTTGACCACAATTGTA
CCCACAACACCTTTGTGGCTCTGGATTCTCTTGAGTGTTTCCTCAACCTC
CTGCGACATGTCGACTGATAACT
BO16040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10751-PA | 294 | robl-RA | 1..291 | 309..19 | 1455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-RA | 527 | CG10751-RA | 100..390 | 309..19 | 1455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17456782..17456992 | 229..19 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 17456636..17456717 | 307..226 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:54:26 has no hits.
BO16040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:03 Download gff for
BO16040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10751-PA | 1..294 | 15..309 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:13:46 Download gff for
BO16040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 93..393 | 15..316 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:34:13 Download gff for
BO16040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 93..393 | 15..316 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:34:13 Download gff for
BO16040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17456624..17456715 | 228..318 | 94 | -> | Minus |
2R | 17456784..17456995 | 15..227 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:13:46 Download gff for
BO16040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13344129..13344220 | 228..318 | 94 | -> | Minus |
arm_2R | 13344289..13344500 | 15..227 | 99 | | Minus |
BO16040.5prime Sequence
323 bp (323 high quality bases) assembled on 2006-06-16
> BO16040.5prime
GAAGTTATCAGTCGACATGTCGCAGGAGGTTGAGGAAACACTCAAGAGAA
TCCAGAGCCACAAAGGTGTTGTGGGTACAATTGTGGTCAACAATGAAGGT
ATTCCGGTCAAATCCACGCTGGACAACACTACCACCGTTCAGTACGCTGG
CCTAATGAGTCAGCTGGCGGACAAGGCACGAAGTGTGGTGAGGGACTTGG
ATCCTTCCAACGACATGACATTCCTGCGGGTGCGATCCAAGAAGCACGAG
ATCATGGTGGCACCCGACAAGGACTTCATCCTGATTGTCATCCAAAACCC
AACCGACGCAAGCTTTCTAGACC
BO16040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10751-PA | 294 | robl-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-RA | 527 | CG10751-RA | 100..390 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17456782..17456992 | 97..307 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 17456636..17456717 | 19..100 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 06:34:45 has no hits.
BO16040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:03 Download gff for
BO16040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10751-PA | 1..294 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:10:37 Download gff for
BO16040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 93..393 | 10..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:42:34 Download gff for
BO16040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 93..393 | 10..311 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:42:34 Download gff for
BO16040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17456624..17456715 | 8..98 | 94 | -> | Plus |
2R | 17456784..17456995 | 99..311 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:10:37 Download gff for
BO16040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13344129..13344220 | 8..98 | 94 | -> | Plus |
arm_2R | 13344289..13344500 | 99..311 | 99 | | Plus |
BO16040.complete Sequence
325 bp assembled on 2008-08-15
GenBank Submission: FJ633682
> BO16040.complete
GAAGTTATCAGTCGACATGTCGCAGGAGGTTGAGGAAACACTCAAGAGAA
TCCAGAGCCACAAAGGTGTTGTGGGTACAATTGTGGTCAACAATGAAGGT
ATTCCGGTCAAATCCACGCTGGACAACACTACCACCGTTCAGTACGCTGG
CCTAATGAGTCAGCTGGCGGACAAGGCACGAAGTGTGGTGAGGGACTTGG
ATCCTTCCAACGACATGACATTCCTGCGGGTGCGATCCAAGAAGCACGAG
ATCATGGTGGCACCCGACAAGGACTTCATCCTGATTGTCATCCAAAACCC
AACCGACGCAAGCTTTCTAGACCAT
BO16040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-RA | 294 | CG10751-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-RA | 527 | CG10751-RA | 100..390 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17456782..17456992 | 97..307 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 17456636..17456717 | 19..100 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:07:17 has no hits.
BO16040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:57 Download gff for
BO16040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 91..391 | 10..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:28 Download gff for
BO16040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 100..390 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:03 Download gff for
BO16040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 98..388 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:51 Download gff for
BO16040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 100..390 | 17..309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:51 Download gff for
BO16040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17456784..17456992 | 99..309 | 99 | | Plus |
2R | 17456635..17456715 | 17..98 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:28 Download gff for
BO16040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13344289..13344497 | 99..309 | 99 | | Plus |
arm_2R | 13344140..13344220 | 17..98 | 98 | -> | Plus |
BO16040.pep Sequence
Translation from 16 to 325
> BO16040.pep
MSQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQL
ADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNPTDASF
LDH
BO16040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-PA | 97 | CG10751-PA | 1..97 | 1..97 | 483 | 100 | Plus |
robl22E-PB | 97 | CG10838-PB | 1..97 | 1..97 | 285 | 54.6 | Plus |
robl22E-PA | 97 | CG10838-PA | 1..97 | 1..97 | 285 | 54.6 | Plus |
CG10834-PA | 97 | CG10834-PA | 1..95 | 1..95 | 230 | 44.2 | Plus |
CG10822-PA | 114 | CG10822-PA | 15..107 | 5..97 | 199 | 35.5 | Plus |