Clone BO16040 Report

Search the DGRC for BO16040

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptrobl-RA
Protein status:BO16040.pep: Imported from assembly
Sequenced Size:325

Clone Sequence Records

BO16040.3prime Sequence

323 bp (323 high quality bases) assembled on 2006-06-16

> BO16040.3prime
ATGGTCTAGAAAGCTTGCGTCGGTTGGGTTTTGGATGACAATCAGGATGA
AGTCCTTGTCGGGTGCCACCATGATCTCGTGCTTCTTGGATCGCACCCGC
AGGAATGTCATGTCGTTGGAAGGATCCAAGTCCCTCACCACACTTCGTGC
CTTGTCCGCCAGCTGACTCATTAGGCCAGCGTACTGAACGGTGGTAGTGT
TGTCCAGCGTGGATTTGACCGGAATACCTTCATTGTTGACCACAATTGTA
CCCACAACACCTTTGTGGCTCTGGATTCTCTTGAGTGTTTCCTCAACCTC
CTGCGACATGTCGACTGATAACT

BO16040.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10751-PA 294 robl-RA 1..291 309..19 1455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
robl-RA 527 CG10751-RA 100..390 309..19 1455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17456782..17456992 229..19 1055 100 Minus
2R 25286936 2R 17456636..17456717 307..226 410 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:54:26 has no hits.

BO16040.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:03 Download gff for BO16040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10751-PA 1..294 15..309 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:13:46 Download gff for BO16040.3prime
Subject Subject Range Query Range Percent Splice Strand
robl-RA 93..393 15..316 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:34:13 Download gff for BO16040.3prime
Subject Subject Range Query Range Percent Splice Strand
robl-RA 93..393 15..316 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:34:13 Download gff for BO16040.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17456624..17456715 228..318 94 -> Minus
2R 17456784..17456995 15..227 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:13:46 Download gff for BO16040.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13344129..13344220 228..318 94 -> Minus
arm_2R 13344289..13344500 15..227 99   Minus

BO16040.5prime Sequence

323 bp (323 high quality bases) assembled on 2006-06-16

> BO16040.5prime
GAAGTTATCAGTCGACATGTCGCAGGAGGTTGAGGAAACACTCAAGAGAA
TCCAGAGCCACAAAGGTGTTGTGGGTACAATTGTGGTCAACAATGAAGGT
ATTCCGGTCAAATCCACGCTGGACAACACTACCACCGTTCAGTACGCTGG
CCTAATGAGTCAGCTGGCGGACAAGGCACGAAGTGTGGTGAGGGACTTGG
ATCCTTCCAACGACATGACATTCCTGCGGGTGCGATCCAAGAAGCACGAG
ATCATGGTGGCACCCGACAAGGACTTCATCCTGATTGTCATCCAAAACCC
AACCGACGCAAGCTTTCTAGACC

BO16040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10751-PA 294 robl-RA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
robl-RA 527 CG10751-RA 100..390 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17456782..17456992 97..307 1055 100 Plus
2R 25286936 2R 17456636..17456717 19..100 410 100 Plus
Blast to na_te.dros performed on 2015-01-31 06:34:45 has no hits.

BO16040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:03 Download gff for BO16040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10751-PA 1..294 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:10:37 Download gff for BO16040.5prime
Subject Subject Range Query Range Percent Splice Strand
robl-RA 93..393 10..311 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:42:34 Download gff for BO16040.5prime
Subject Subject Range Query Range Percent Splice Strand
robl-RA 93..393 10..311 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:42:34 Download gff for BO16040.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17456624..17456715 8..98 94 -> Plus
2R 17456784..17456995 99..311 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:10:37 Download gff for BO16040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13344129..13344220 8..98 94 -> Plus
arm_2R 13344289..13344500 99..311 99   Plus

BO16040.complete Sequence

325 bp assembled on 2008-08-15

GenBank Submission: FJ633682

> BO16040.complete
GAAGTTATCAGTCGACATGTCGCAGGAGGTTGAGGAAACACTCAAGAGAA
TCCAGAGCCACAAAGGTGTTGTGGGTACAATTGTGGTCAACAATGAAGGT
ATTCCGGTCAAATCCACGCTGGACAACACTACCACCGTTCAGTACGCTGG
CCTAATGAGTCAGCTGGCGGACAAGGCACGAAGTGTGGTGAGGGACTTGG
ATCCTTCCAACGACATGACATTCCTGCGGGTGCGATCCAAGAAGCACGAG
ATCATGGTGGCACCCGACAAGGACTTCATCCTGATTGTCATCCAAAACCC
AACCGACGCAAGCTTTCTAGACCAT

BO16040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
robl-RA 294 CG10751-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
robl-RA 527 CG10751-RA 100..390 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17456782..17456992 97..307 1055 100 Plus
2R 25286936 2R 17456636..17456717 19..100 410 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:07:17 has no hits.

BO16040.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:57 Download gff for BO16040.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 91..391 10..311 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:28 Download gff for BO16040.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 100..390 17..309 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:03 Download gff for BO16040.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 98..388 17..309 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:51 Download gff for BO16040.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 100..390 17..309 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:51 Download gff for BO16040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17456784..17456992 99..309 99   Plus
2R 17456635..17456715 17..98 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:28 Download gff for BO16040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13344289..13344497 99..309 99   Plus
arm_2R 13344140..13344220 17..98 98 -> Plus

BO16040.pep Sequence

Translation from 16 to 325

> BO16040.pep
MSQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQL
ADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNPTDASF
LDH

BO16040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
robl-PA 97 CG10751-PA 1..97 1..97 483 100 Plus
robl22E-PB 97 CG10838-PB 1..97 1..97 285 54.6 Plus
robl22E-PA 97 CG10838-PA 1..97 1..97 285 54.6 Plus
CG10834-PA 97 CG10834-PA 1..95 1..95 230 44.2 Plus
CG10822-PA 114 CG10822-PA 15..107 5..97 199 35.5 Plus