Clone Sequence Records
BO16042.3prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-16
> BO16042.3prime
ATGGTCTAGAAAGCTTGCGCAGCGAATCCCCGTGCCGATGGCCATAAAGG
TGCCAAAGGTTCCGCCGCCCTGGACCATGGTCTTGCCCACGTTGTTGATC
AGCTCCCGCCCGCGTAGTCCGTATCTGAGCGCCGAGAACCCGCCAAAGAC
CGCACCGCTGGCCATGCCCACGCAGAATCCGATGATGAAGCCCGTCTTCA
TCTTATCGAAGCACGTTGGTCCCTGCTGGGAAAATGAGCTCGTAGGCAGA
GGCATGTCGACTGATAACT
BO16042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-PA | 240 | CG6878-RA | 1..237 | 255..19 | 1185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-RA | 531 | CG6878-RA | 186..423 | 256..19 | 1190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162002..15162133 | 256..125 | 660 | 100 | Minus |
3L | 28110227 | 3L | 15162255..15162362 | 126..19 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 08:17:53 has no hits.
BO16042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:06 Download gff for
BO16042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-PA | 1..240 | 16..255 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:52:42 Download gff for
BO16042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 181..430 | 12..262 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:42 Download gff for
BO16042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 181..430 | 12..262 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:42 Download gff for
BO16042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15161997..15162133 | 125..262 | 98 | -> | Minus |
3L | 15162257..15162369 | 12..124 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:52:42 Download gff for
BO16042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15155097..15155233 | 125..262 | 98 | -> | Minus |
arm_3L | 15155357..15155469 | 12..124 | 96 | | Minus |
BO16042.5prime Sequence
269 bp (269 high quality bases) assembled on 2006-06-16
> BO16042.5prime
GAAGTTATCAGTCGACATGCCTCTGCCTACGAGCTCATTTTCCCAGCAGG
GACCAACGTGCTTCGATAAGATGAAGACGGGCTTCATCATCGGATTCTGC
GTGGGCATGGCCAGCGGTGCGGTCTTTGGCGGGTTCTCGGCGCTCAGATA
CGGACTACGCGGGCGGGAGCTGATCAACAACGTGGGCAAGACCATGGTCC
AGGGCGGCGGAACCTTTGGCACCTTTATGGCCATCGGCACGGGGATTCGC
TGCGCAAGCTTTCTAGACC
BO16042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-PA | 240 | CG6878-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-RA | 531 | CG6878-RA | 186..423 | 16..253 | 1190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162002..15162133 | 16..147 | 660 | 100 | Plus |
3L | 28110227 | 3L | 15162255..15162362 | 146..253 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:31:29 has no hits.
BO16042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:06 Download gff for
BO16042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-PA | 1..240 | 17..256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:11:39 Download gff for
BO16042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 181..430 | 10..260 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:43 Download gff for
BO16042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 181..430 | 10..260 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:43 Download gff for
BO16042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15161997..15162133 | 10..147 | 98 | -> | Plus |
3L | 15162257..15162369 | 148..260 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:11:39 Download gff for
BO16042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15155097..15155233 | 10..147 | 98 | -> | Plus |
arm_3L | 15155357..15155469 | 148..260 | 96 | | Plus |
BO16042.complete Sequence
271 bp assembled on 2008-08-15
GenBank Submission: FJ633683
> BO16042.complete
GAAGTTATCAGTCGACATGCCTCTGCCTACGAGCTCATTTTCCCAGCAGG
GACCAACGTGCTTCGATAAGATGAAGACGGGCTTCATCATCGGATTCTGC
GTGGGCATGGCCAGCGGTGCGGTCTTTGGCGGGTTCTCGGCGCTCAGATA
CGGACTACGCGGGCGGGAGCTGATCAACAACGTGGGCAAGACCATGGTCC
AGGGCGGCGGAACCTTTGGCACCTTTATGGCCATCGGCACGGGGATTCGC
TGCGCAAGCTTTCTAGACCAT
BO16042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-RA | 240 | CG6878-PA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-RA | 531 | CG6878-RA | 186..423 | 16..253 | 1190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162002..15162133 | 16..147 | 660 | 100 | Plus |
3L | 28110227 | 3L | 15162255..15162362 | 146..253 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:59:53 has no hits.
BO16042.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:51 Download gff for
BO16042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 183..432 | 10..260 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:12 Download gff for
BO16042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 187..423 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:42 Download gff for
BO16042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 189..425 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:40 Download gff for
BO16042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 187..423 | 17..255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:40 Download gff for
BO16042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15162003..15162133 | 17..147 | 100 | -> | Plus |
3L | 15162257..15162362 | 148..255 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:12 Download gff for
BO16042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15155103..15155233 | 17..147 | 100 | -> | Plus |
arm_3L | 15155357..15155462 | 148..255 | 98 | | Plus |
BO16042.pep Sequence
Translation from 16 to 271
> BO16042.pep
MPLPTSSFSQQGPTCFDKMKTGFIIGFCVGMASGAVFGGFSALRYGLRGR
ELINNVGKTMVQGGGTFGTFMAIGTGIRCASFLDH
BO16042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-PA | 79 | CG6878-PA | 1..79 | 1..79 | 420 | 100 | Plus |