Clone Sequence Records
BO16043.3prime Sequence
302 bp (302 high quality bases) assembled on 2006-06-16
> BO16043.3prime
ATGGTCTAGAAAGCTTGCACCGATCACAACTGGTCCCAGGCCATGGACGC
TCTTGATCAGCAGAGGAGAAGGATGCACCTGGGTGATGGCAGCATGAGAA
ATGGCACCGGGCACCACGCTCACCACCTGAGGAGCAAGCAGAGGAGATCC
GACAACGGTGGGTCCCCAGATTCCAGGTGCCACAATGCCAGGGCCAATGA
GACCAGGAGCAGGAGCAGGAGCAGGAGCGGGAGCTGGGGCAGCAGCAGCC
AGGCTAAGGAGAGCAACGAAGACGCACAGCTTGAACATGTCGACTGATAA
CT
BO16043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13061-PA | 273 | Nplp3-RA | 1..270 | 288..19 | 1350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-RA | 538 | CG13061-RA | 35..304 | 288..19 | 1350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16318198..16318456 | 277..19 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:13:45 has no hits.
BO16043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:07 Download gff for
BO16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13061-PA | 1..273 | 15..288 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:55 Download gff for
BO16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 35..307 | 15..288 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:58 Download gff for
BO16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 35..307 | 15..288 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:58 Download gff for
BO16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16318199..16318459 | 15..276 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:55 Download gff for
BO16043.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16311299..16311559 | 15..276 | 99 | | Minus |
BO16043.5prime Sequence
302 bp (302 high quality bases) assembled on 2006-06-16
> BO16043.5prime
GAAGTTATCAGTCGACATGTTCAAGCTGTGCGTCTTCGTTGCTCTCCTTA
GCCTGGCTGCTGCTGCCCCAGCTCCCGCTCCTGCTCCTGCTCCTGCTCCT
GGTCTCATTGGCCCTGGCATTGTGGCACCTGGAATCTGGGGACCCACCGT
TGTCGGATCTCCTCTGCTTGCTCCTCAGGTGGTGAGCGTGGTGCCCGGTG
CCATTTCTCATGCTGCCATCACCCAGGTGCATCCTTCTCCTCTGCTGATC
AAGAGCGTCCATGGCCTGGGACCAGTTGTGATCGGTGCAAGCTTTCTAGA
CC
BO16043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13061-PA | 273 | Nplp3-RA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-RA | 538 | CG13061-RA | 35..304 | 17..286 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16318198..16318456 | 28..286 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 08:18:17 has no hits.
BO16043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:08 Download gff for
BO16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13061-PA | 1..273 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:52:55 Download gff for
BO16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 35..307 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:44 Download gff for
BO16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 35..307 | 17..290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:44 Download gff for
BO16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16318199..16318459 | 29..290 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:52:55 Download gff for
BO16043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16311299..16311559 | 29..290 | 99 | | Plus |
BO16043.complete Sequence
304 bp assembled on 2008-08-15
GenBank Submission: FJ633684
> BO16043.complete
GAAGTTATCAGTCGACATGTTCAAGCTGTGCGTCTTCGTTGCTCTCCTTA
GCCTGGCTGCTGCTGCCCCAGCTCCCGCTCCTGCTCCTGCTCCTGCTCCT
GGTCTCATTGGCCCTGGCATTGTGGCACCTGGAATCTGGGGACCCACCGT
TGTCGGATCTCCTCTGCTTGCTCCTCAGGTGGTGAGCGTGGTGCCCGGTG
CCATTTCTCATGCTGCCATCACCCAGGTGCATCCTTCTCCTCTGCTGATC
AAGAGCGTCCATGGCCTGGGACCAGTTGTGATCGGTGCAAGCTTTCTAGA
CCAT
BO16043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-RA | 273 | CG13061-PA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-RA | 538 | CG13061-RA | 35..304 | 17..286 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16318198..16318456 | 28..286 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:41:49 has no hits.
BO16043.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:46 Download gff for
BO16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 34..306 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:18 Download gff for
BO16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 40..304 | 22..288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:03 Download gff for
BO16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 39..303 | 22..288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:49 Download gff for
BO16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp3-RA | 40..304 | 22..288 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:49 Download gff for
BO16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16318195..16318456 | 22..288 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:18 Download gff for
BO16043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16311295..16311556 | 22..288 | 97 | | Plus |
BO16043.pep Sequence
Translation from 16 to 304
> BO16043.pep
MFKLCVFVALLSLAAAAPAPAPAPAPAPGLIGPGIVAPGIWGPTVVGSPL
LAPQVVSVVPGAISHAAITQVHPSPLLIKSVHGLGPVVIGASFLDH
BO16043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp3-PA | 90 | CG13061-PA | 1..90 | 1..90 | 460 | 100 | Plus |
