Clone Sequence Records
BO16047.3prime Sequence
320 bp (320 high quality bases) assembled on 2006-06-16
> BO16047.3prime
ATGGTCTAGAAAGCTTGCCTTCCGTGGCTGCTGGATGTGGATCTGGGGCT
TCTGCTGCACTGCAGCCGGTGGCTTGGGCGAGTGGGCCACCTGGGCGGAG
GCGGGCGTAAAGTCCGTGTTGCCCTTGACGGGGGCACCGCTCACAGAGCC
GGAGTTCACGGCAATGGGTTGTGTCAGTCCAGTACAATCCTCTGCATCCT
TGGGCGCGCGTTCTGCCGTCGGCGCTTTGTGCTGCACAATTCGCATGCCA
CCAGCCTTCAATGCAGGTGGGTGTCCGGCCACAAGATTTGGTTGTTCATC
TGCCATGTCGACTGATAACT
BO16047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-PA | 291 | CG12384-RA | 1..288 | 306..19 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-RA | 612 | CG12384-RA | 108..395 | 306..19 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11358119..11358271 | 19..171 | 765 | 100 | Plus |
2R | 25286936 | 2R | 11358336..11358424 | 172..260 | 445 | 100 | Plus |
2R | 25286936 | 2R | 11358958..11359003 | 261..306 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:18:07 has no hits.
BO16047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:13 Download gff for
BO16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-PA | 1..291 | 16..306 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 16:59:55 Download gff for
BO16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 100..401 | 13..314 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:22 Download gff for
BO16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 100..401 | 13..314 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:22 Download gff for
BO16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11358113..11358271 | 13..171 | 98 | <- | Plus |
2R | 11358336..11358424 | 172..260 | 100 | <- | Plus |
2R | 11358958..11359011 | 261..314 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 16:59:55 Download gff for
BO16047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7245618..7245776 | 13..171 | 98 | <- | Plus |
arm_2R | 7245841..7245929 | 172..260 | 100 | <- | Plus |
arm_2R | 7246463..7246516 | 261..314 | 92 | | Plus |
BO16047.5prime Sequence
320 bp (320 high quality bases) assembled on 2006-06-16
> BO16047.5prime
GAAGTTATCAGTCGACATGGCAGATGAACAACCAAATCTTGTGGCCGGAC
ACCCACCTGCATTGAAGGCTGGTGGCATGCGAATTGTGCAGCACAAAGCG
CCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGATTGTACTGGACTGAC
ACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCGGTGCCCCCGTCAAGG
GCAACACGGACTTTACGCCCGCCTCCGCCCAGGTGGCCCACTCGCCCAAG
CCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCACATCCAGCAGCCACG
GAAGGCAAGCTTTCTAGACC
BO16047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-PA | 291 | CG12384-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-RA | 612 | CG12384-RA | 108..395 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11358119..11358271 | 304..152 | 765 | 100 | Minus |
2R | 25286936 | 2R | 11358336..11358424 | 151..63 | 445 | 100 | Minus |
2R | 25286936 | 2R | 11358958..11359003 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:32:46 has no hits.
BO16047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:13 Download gff for
BO16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-PA | 1..291 | 17..307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:49:33 Download gff for
BO16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 100..401 | 9..310 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:08:17 Download gff for
BO16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 100..401 | 9..310 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:08:17 Download gff for
BO16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11358113..11358271 | 152..310 | 98 | <- | Minus |
2R | 11358336..11358424 | 63..151 | 100 | <- | Minus |
2R | 11358958..11359011 | 9..62 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:49:33 Download gff for
BO16047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7245618..7245776 | 152..310 | 98 | <- | Minus |
arm_2R | 7245841..7245929 | 63..151 | 100 | <- | Minus |
arm_2R | 7246463..7246516 | 9..62 | 92 | | Minus |
BO16047.complete Sequence
322 bp assembled on 2008-08-15
GenBank Submission: FJ633686
> BO16047.complete
GAAGTTATCAGTCGACATGGCAGATGAACAACCAAATCTTGTGGCCGGAC
ACCCACCTGCATTGAAGGCTGGTGGCATGCGAATTGTGCAGCACAAAGCG
CCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGATTGTACTGGACTGAC
ACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCGGTGCCCCCGTCAAGG
GCAACACGGACTTTACGCCCGCCTCCGCCCAGGTGGCCCACTCGCCCAAG
CCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCACATCCAGCAGCCACG
GAAGGCAAGCTTTCTAGACCAT
BO16047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-RA | 291 | CG12384-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-RA | 612 | CG12384-RA | 108..395 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11358119..11358271 | 304..152 | 765 | 100 | Minus |
2R | 25286936 | 2R | 11358336..11358424 | 151..63 | 445 | 100 | Minus |
2R | 25286936 | 2R | 11358958..11359003 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:54:19 has no hits.
BO16047.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:43 Download gff for
BO16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 77..378 | 9..310 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:03 Download gff for
BO16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 108..395 | 17..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:56 Download gff for
BO16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 85..372 | 17..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:10 Download gff for
BO16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12384-RA | 108..395 | 17..306 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:10 Download gff for
BO16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11358116..11358271 | 152..306 | 98 | <- | Minus |
2R | 11358336..11358424 | 63..151 | 100 | <- | Minus |
2R | 11358958..11359003 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:03 Download gff for
BO16047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7245621..7245776 | 152..306 | 98 | <- | Minus |
arm_2R | 7245841..7245929 | 63..151 | 100 | <- | Minus |
arm_2R | 7246463..7246508 | 17..62 | 100 | | Minus |
BO16047.pep Sequence
Translation from 16 to 322
> BO16047.pep
MADEQPNLVAGHPPALKAGGMRIVQHKAPTAERAPKDAEDCTGLTQPIAV
NSGSVSGAPVKGNTDFTPASAQVAHSPKPPAAVQQKPQIHIQQPRKASFL
DH
BO16047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12384-PA | 96 | CG12384-PA | 1..96 | 1..96 | 503 | 100 | Plus |