Clone BO16047 Report

Search the DGRC for BO16047

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG12384-RA
Protein status:BO16047.pep: Imported from assembly
Sequenced Size:322

Clone Sequence Records

BO16047.3prime Sequence

320 bp (320 high quality bases) assembled on 2006-06-16

> BO16047.3prime
ATGGTCTAGAAAGCTTGCCTTCCGTGGCTGCTGGATGTGGATCTGGGGCT
TCTGCTGCACTGCAGCCGGTGGCTTGGGCGAGTGGGCCACCTGGGCGGAG
GCGGGCGTAAAGTCCGTGTTGCCCTTGACGGGGGCACCGCTCACAGAGCC
GGAGTTCACGGCAATGGGTTGTGTCAGTCCAGTACAATCCTCTGCATCCT
TGGGCGCGCGTTCTGCCGTCGGCGCTTTGTGCTGCACAATTCGCATGCCA
CCAGCCTTCAATGCAGGTGGGTGTCCGGCCACAAGATTTGGTTGTTCATC
TGCCATGTCGACTGATAACT

BO16047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-PA 291 CG12384-RA 1..288 306..19 1440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-RA 612 CG12384-RA 108..395 306..19 1440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11358119..11358271 19..171 765 100 Plus
2R 25286936 2R 11358336..11358424 172..260 445 100 Plus
2R 25286936 2R 11358958..11359003 261..306 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:18:07 has no hits.

BO16047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:13 Download gff for BO16047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-PA 1..291 16..306 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 16:59:55 Download gff for BO16047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 100..401 13..314 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:22 Download gff for BO16047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 100..401 13..314 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:22 Download gff for BO16047.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11358113..11358271 13..171 98 <- Plus
2R 11358336..11358424 172..260 100 <- Plus
2R 11358958..11359011 261..314 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 16:59:55 Download gff for BO16047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7245618..7245776 13..171 98 <- Plus
arm_2R 7245841..7245929 172..260 100 <- Plus
arm_2R 7246463..7246516 261..314 92   Plus

BO16047.5prime Sequence

320 bp (320 high quality bases) assembled on 2006-06-16

> BO16047.5prime
GAAGTTATCAGTCGACATGGCAGATGAACAACCAAATCTTGTGGCCGGAC
ACCCACCTGCATTGAAGGCTGGTGGCATGCGAATTGTGCAGCACAAAGCG
CCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGATTGTACTGGACTGAC
ACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCGGTGCCCCCGTCAAGG
GCAACACGGACTTTACGCCCGCCTCCGCCCAGGTGGCCCACTCGCCCAAG
CCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCACATCCAGCAGCCACG
GAAGGCAAGCTTTCTAGACC

BO16047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-PA 291 CG12384-RA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-RA 612 CG12384-RA 108..395 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11358119..11358271 304..152 765 100 Minus
2R 25286936 2R 11358336..11358424 151..63 445 100 Minus
2R 25286936 2R 11358958..11359003 62..17 230 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:32:46 has no hits.

BO16047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:13 Download gff for BO16047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-PA 1..291 17..307 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:49:33 Download gff for BO16047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 100..401 9..310 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:08:17 Download gff for BO16047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 100..401 9..310 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:08:17 Download gff for BO16047.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11358113..11358271 152..310 98 <- Minus
2R 11358336..11358424 63..151 100 <- Minus
2R 11358958..11359011 9..62 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:49:33 Download gff for BO16047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7245618..7245776 152..310 98 <- Minus
arm_2R 7245841..7245929 63..151 100 <- Minus
arm_2R 7246463..7246516 9..62 92   Minus

BO16047.complete Sequence

322 bp assembled on 2008-08-15

GenBank Submission: FJ633686

> BO16047.complete
GAAGTTATCAGTCGACATGGCAGATGAACAACCAAATCTTGTGGCCGGAC
ACCCACCTGCATTGAAGGCTGGTGGCATGCGAATTGTGCAGCACAAAGCG
CCGACGGCAGAACGCGCGCCCAAGGATGCAGAGGATTGTACTGGACTGAC
ACAACCCATTGCCGTGAACTCCGGCTCTGTGAGCGGTGCCCCCGTCAAGG
GCAACACGGACTTTACGCCCGCCTCCGCCCAGGTGGCCCACTCGCCCAAG
CCACCGGCTGCAGTGCAGCAGAAGCCCCAGATCCACATCCAGCAGCCACG
GAAGGCAAGCTTTCTAGACCAT

BO16047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-RA 291 CG12384-PA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-RA 612 CG12384-RA 108..395 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11358119..11358271 304..152 765 100 Minus
2R 25286936 2R 11358336..11358424 151..63 445 100 Minus
2R 25286936 2R 11358958..11359003 62..17 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:54:19 has no hits.

BO16047.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:43 Download gff for BO16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 77..378 9..310 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:03 Download gff for BO16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 108..395 17..306 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:56 Download gff for BO16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 85..372 17..306 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:10 Download gff for BO16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG12384-RA 108..395 17..306 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:10 Download gff for BO16047.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11358116..11358271 152..306 98 <- Minus
2R 11358336..11358424 63..151 100 <- Minus
2R 11358958..11359003 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:03 Download gff for BO16047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7245621..7245776 152..306 98 <- Minus
arm_2R 7245841..7245929 63..151 100 <- Minus
arm_2R 7246463..7246508 17..62 100   Minus

BO16047.pep Sequence

Translation from 16 to 322

> BO16047.pep
MADEQPNLVAGHPPALKAGGMRIVQHKAPTAERAPKDAEDCTGLTQPIAV
NSGSVSGAPVKGNTDFTPASAQVAHSPKPPAAVQQKPQIHIQQPRKASFL
DH

BO16047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12384-PA 96 CG12384-PA 1..96 1..96 503 100 Plus