Clone Sequence Records
BO16048.3prime Sequence
266 bp (266 high quality bases) assembled on 2006-06-16
> BO16048.3prime
ATGGTCTAGAAAGCTTGCTGGTGCCAACATTTTTGACAACTCCTCATCTT
GCAAGCATCCTTTCAAGAACTCATCTTGGGTTAATTGACCATCGTTATTT
TCGTCCATTTTTGCAAAAATATTTTTTGCTCTTTCTTCTGCTGAATCAGC
TGGACGATTAGATGAGCACGCTCCTAGCATGTCATAAATTGCCTGAACAA
TTTTGGTCATTTCTTGTATGTCTATAACACCATTGCCATCGACATCGTAC
ATGTCGACTGATAACT
BO16048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-PA | 561 | CG7646-RA | 325..558 | 252..19 | 1170 | 100 | Minus |
CG7646-PB | 237 | CG7646-RB | 1..234 | 252..19 | 1170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-RC | 1696 | CG7646-RC | 996..1229 | 252..19 | 1170 | 100 | Minus |
CG7646-RB | 627 | CG7646-RB | 284..517 | 252..19 | 1170 | 100 | Minus |
CG7646-RA | 970 | CG7646-RA | 627..860 | 252..19 | 1170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19995625..19995802 | 196..19 | 890 | 100 | Minus |
3L | 28110227 | 3L | 19995443..19995503 | 252..192 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:36:47 has no hits.
BO16048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:14 Download gff for
BO16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-PB | 1..237 | 15..252 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:40:19 Download gff for
BO16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 623..863 | 15..257 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:45 Download gff for
BO16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 623..863 | 15..257 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:45 Download gff for
BO16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19995439..19995502 | 193..257 | 98 | -> | Minus |
3L | 19995629..19995805 | 15..192 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:40:19 Download gff for
BO16048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19988539..19988602 | 193..257 | 98 | -> | Minus |
arm_3L | 19988729..19988905 | 15..192 | 98 | | Minus |
BO16048.5prime Sequence
266 bp (266 high quality bases) assembled on 2006-06-16
> BO16048.5prime
GAAGTTATCAGTCGACATGTACGATGTCGATGGCAATGGTGTTATAGACA
TACAAGAAATGACCAAAATTGTTCAGGCAATTTATGACATGCTAGGAGCG
TGCTCATCTAATCGTCCAGCTGATTCAGCAGAAGAAAGAGCAAAAAATAT
TTTTGCAAAAATGGACGAAAATAACGATGGTCAATTAACCCAAGATGAGT
TCTTGAAAGGATGCTTGCAAGATGAGGAGTTGTCAAAAATGTTGGCACCA
GCAAGCTTTCTAGACC
BO16048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-PA | 561 | CG7646-RA | 325..558 | 17..250 | 1170 | 100 | Plus |
CG7646-PB | 237 | CG7646-RB | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-RC | 1696 | CG7646-RC | 996..1229 | 17..250 | 1170 | 100 | Plus |
CG7646-RB | 627 | CG7646-RB | 284..517 | 17..250 | 1170 | 100 | Plus |
CG7646-RA | 970 | CG7646-RA | 627..860 | 17..250 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19995625..19995802 | 73..250 | 890 | 100 | Plus |
3L | 28110227 | 3L | 19995443..19995503 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 14:45:24 has no hits.
BO16048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:15 Download gff for
BO16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-PB | 1..237 | 17..254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:54:35 Download gff for
BO16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 623..863 | 12..254 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:24:20 Download gff for
BO16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 623..863 | 12..254 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:24:20 Download gff for
BO16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19995439..19995502 | 12..76 | 98 | -> | Plus |
3L | 19995629..19995805 | 77..254 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:54:35 Download gff for
BO16048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19988539..19988602 | 12..76 | 98 | -> | Plus |
arm_3L | 19988729..19988905 | 77..254 | 98 | | Plus |
BO16048.complete Sequence
268 bp assembled on 2008-08-15
GenBank Submission: FJ633687
> BO16048.complete
GAAGTTATCAGTCGACATGTACGATGTCGATGGCAATGGTGTTATAGACA
TACAAGAAATGACCAAAATTGTTCAGGCAATTTATGACATGCTAGGAGCG
TGCTCATCTAATCGTCCAGCTGATTCAGCAGAAGAAAGAGCAAAAAATAT
TTTTGCAAAAATGGACGAAAATAACGATGGTCAATTAACCCAAGATGAGT
TCTTGAAAGGATGCTTGCAAGATGAGGAGTTGTCAAAAATGTTGGCACCA
GCAAGCTTTCTAGACCAT
BO16048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-RC | 561 | CG7646-PC | 325..558 | 17..250 | 1170 | 100 | Plus |
CG7646-RB | 237 | CG7646-PB | 1..234 | 17..250 | 1170 | 100 | Plus |
CG7646-RA | 561 | CG7646-PA | 325..558 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-RC | 1696 | CG7646-RC | 996..1229 | 17..250 | 1170 | 100 | Plus |
CG7646-RB | 627 | CG7646-RB | 284..517 | 17..250 | 1170 | 100 | Plus |
CG7646-RA | 970 | CG7646-RA | 627..860 | 17..250 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19995625..19995802 | 73..250 | 890 | 100 | Plus |
3L | 28110227 | 3L | 19995443..19995503 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:23:30 has no hits.
BO16048.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:55 Download gff for
BO16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 321..561 | 12..254 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:44 Download gff for
BO16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 627..860 | 17..252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:11 Download gff for
BO16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 325..558 | 17..252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:23 Download gff for
BO16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7646-RA | 627..860 | 17..252 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:23 Download gff for
BO16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19995629..19995802 | 77..252 | 98 | | Plus |
3L | 19995443..19995502 | 17..76 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:44 Download gff for
BO16048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19988543..19988602 | 17..76 | 100 | -> | Plus |
arm_3L | 19988729..19988902 | 77..252 | 98 | | Plus |
BO16048.pep Sequence
Translation from 16 to 268
> BO16048.pep
MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMD
ENNDGQLTQDEFLKGCLQDEELSKMLAPASFLDH
BO16048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7646-PB | 78 | CG7646-PB | 1..78 | 1..78 | 402 | 100 | Plus |
CG7646-PC | 186 | CG7646-PC | 109..186 | 1..78 | 402 | 100 | Plus |
CG7646-PA | 186 | CG7646-PA | 109..186 | 1..78 | 402 | 100 | Plus |
Nca-PA | 190 | CG7641-PA | 107..183 | 1..76 | 163 | 44.9 | Plus |
CG44422-PE | 363 | CG44422-PE | 280..357 | 1..77 | 158 | 38.5 | Plus |