Clone Sequence Records
BO16050.3prime Sequence
296 bp (296 high quality bases) assembled on 2006-06-16
> BO16050.3prime
ATGGTCTAGAAAGCTTGCGCGTCTACGTCCAGCGCCTCCGGCACGAGCAC
TCCCACCCACCTCGGCGCCCGCTCCAATGCCGACGTCCATCCCAGCTCCA
GGTCCGTCCTCAACGGCTTTAGCCGCTCCGCCGCCGTGAGCTCCAAATTG
TCCGCCCGCCCCCGCCGCTGCGCCCAAGCCCCCTTGGGCGGCACCCATAG
CCTCGGGTTGATCTGGAACTTGAGCCTCTGCGATGCTCCGAAGCATCACC
CAAGTAATCCAGGACAACATTGCCAGTTTCATGTCGACTGATAACT
BO16050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-PA | 267 | CG12483-RA | 1..264 | 282..19 | 1320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-RA | 608 | CG12483-RA | 47..310 | 282..19 | 1320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 97926..98145 | 19..238 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 98285..98329 | 238..282 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 08:19:06 has no hits.
BO16050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:16 Download gff for
BO16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-PA | 1..267 | 18..282 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:53:15 Download gff for
BO16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..310 | 19..282 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:03 Download gff for
BO16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..310 | 19..282 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:03 Download gff for
BO16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 97926..98144 | 19..237 | 100 | <- | Plus |
3L | 98285..98329 | 238..282 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:53:15 Download gff for
BO16050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 97926..98144 | 19..237 | 100 | <- | Plus |
arm_3L | 98285..98329 | 238..282 | 100 | | Plus |
BO16050.5prime Sequence
296 bp (296 high quality bases) assembled on 2006-06-16
> BO16050.5prime
GAAGTTATCAGTCGACATGAAACTGGCAATGTTGTCCTGGATTACTTGGG
TGATGCTTCGGAGCATCGCAGAGGCTCAAGTTCCAGATCAACCCGAGGCT
ATGGGTGCCGCCCAAGGGGGCTTGGGCGCAGCGGCGGGGGCGGGCGGACA
ATTTGGAGCTCACGGCGGCGGAGCGGCTAAAGCCGTTGAGGACGGACCTG
GAGCTGGGATGGACGTCGGCATTGGAGCGGGCGCCGAGGTGGGTGGGAGT
GCTCGTGCCGGAGGCGCTGGACGTAGACGCGCAAGCTTTCTAGACC
BO16050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-PA | 267 | CG12483-RA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-RA | 608 | CG12483-RA | 47..310 | 17..280 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 97926..98145 | 280..61 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 98285..98329 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:43:04 has no hits.
BO16050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:17 Download gff for
BO16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-PA | 1..267 | 17..281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:22:34 Download gff for
BO16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..310 | 17..280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:31 Download gff for
BO16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..310 | 17..280 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:31 Download gff for
BO16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 97926..98144 | 62..280 | 100 | <- | Minus |
3L | 98285..98329 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:22:34 Download gff for
BO16050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 97926..98144 | 62..280 | 100 | <- | Minus |
arm_3L | 98285..98329 | 17..61 | 100 | | Minus |
BO16050.complete Sequence
298 bp assembled on 2008-08-15
GenBank Submission: FJ633688
> BO16050.complete
GAAGTTATCAGTCGACATGAAACTGGCAATGTTGTCCTGGATTACTTGGG
TGATGCTTCGGAGCATCGCAGAGGCTCAAGTTCCAGATCAACCCGAGGCT
ATGGGTGCCGCCCAAGGGGGCTTGGGCGCAGCGGCGGGGGCGGGCGGACA
ATTTGGAGCTCACGGCGGCGGAGCGGCTAAAGCCGTTGAGGACGGACCTG
GAGCTGGGATGGACGTCGGCATTGGAGCGGGCGCCGAGGTGGGTGGGAGT
GCTCGTGCCGGAGGCGCTGGACGTAGACGCGCAAGCTTTCTAGACCAT
BO16050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-RA | 267 | CG12483-PA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-RA | 608 | CG12483-RA | 47..310 | 17..280 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 97926..98145 | 280..61 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 98285..98329 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:00:36 has no hits.
BO16050.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:44 Download gff for
BO16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 43..306 | 17..280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:05 Download gff for
BO16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..310 | 17..282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:18 Download gff for
BO16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 43..306 | 17..282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:31 Download gff for
BO16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12483-RA | 47..310 | 17..282 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:31 Download gff for
BO16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 97924..98144 | 62..282 | 99 | <- | Minus |
3L | 98285..98329 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:05 Download gff for
BO16050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 97924..98144 | 62..282 | 99 | <- | Minus |
arm_3L | 98285..98329 | 17..61 | 100 | | Minus |
BO16050.pep Sequence
Translation from 16 to 298
> BO16050.pep
MKLAMLSWITWVMLRSIAEAQVPDQPEAMGAAQGGLGAAAGAGGQFGAHG
GGAAKAVEDGPGAGMDVGIGAGAEVGGSARAGGAGRRRASFLDH
BO16050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12483-PA | 88 | CG12483-PA | 1..88 | 1..88 | 452 | 100 | Plus |