Clone BO16050 Report

Search the DGRC for BO16050

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG12483-RA
Protein status:BO16050.pep: Imported from assembly
Sequenced Size:298

Clone Sequence Records

BO16050.3prime Sequence

296 bp (296 high quality bases) assembled on 2006-06-16

> BO16050.3prime
ATGGTCTAGAAAGCTTGCGCGTCTACGTCCAGCGCCTCCGGCACGAGCAC
TCCCACCCACCTCGGCGCCCGCTCCAATGCCGACGTCCATCCCAGCTCCA
GGTCCGTCCTCAACGGCTTTAGCCGCTCCGCCGCCGTGAGCTCCAAATTG
TCCGCCCGCCCCCGCCGCTGCGCCCAAGCCCCCTTGGGCGGCACCCATAG
CCTCGGGTTGATCTGGAACTTGAGCCTCTGCGATGCTCCGAAGCATCACC
CAAGTAATCCAGGACAACATTGCCAGTTTCATGTCGACTGATAACT

BO16050.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-PA 267 CG12483-RA 1..264 282..19 1320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-RA 608 CG12483-RA 47..310 282..19 1320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 97926..98145 19..238 1100 100 Plus
3L 28110227 3L 98285..98329 238..282 225 100 Plus
Blast to na_te.dros performed on 2015-02-11 08:19:06 has no hits.

BO16050.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:16 Download gff for BO16050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-PA 1..267 18..282 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:53:15 Download gff for BO16050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..310 19..282 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:03 Download gff for BO16050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..310 19..282 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:03 Download gff for BO16050.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 97926..98144 19..237 100 <- Plus
3L 98285..98329 238..282 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:53:15 Download gff for BO16050.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 97926..98144 19..237 100 <- Plus
arm_3L 98285..98329 238..282 100   Plus

BO16050.5prime Sequence

296 bp (296 high quality bases) assembled on 2006-06-16

> BO16050.5prime
GAAGTTATCAGTCGACATGAAACTGGCAATGTTGTCCTGGATTACTTGGG
TGATGCTTCGGAGCATCGCAGAGGCTCAAGTTCCAGATCAACCCGAGGCT
ATGGGTGCCGCCCAAGGGGGCTTGGGCGCAGCGGCGGGGGCGGGCGGACA
ATTTGGAGCTCACGGCGGCGGAGCGGCTAAAGCCGTTGAGGACGGACCTG
GAGCTGGGATGGACGTCGGCATTGGAGCGGGCGCCGAGGTGGGTGGGAGT
GCTCGTGCCGGAGGCGCTGGACGTAGACGCGCAAGCTTTCTAGACC

BO16050.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-PA 267 CG12483-RA 1..264 17..280 1320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-RA 608 CG12483-RA 47..310 17..280 1320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 97926..98145 280..61 1100 100 Minus
3L 28110227 3L 98285..98329 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:43:04 has no hits.

BO16050.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:17 Download gff for BO16050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-PA 1..267 17..281 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:22:34 Download gff for BO16050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..310 17..280 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:31 Download gff for BO16050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..310 17..280 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:31 Download gff for BO16050.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 97926..98144 62..280 100 <- Minus
3L 98285..98329 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:22:34 Download gff for BO16050.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 97926..98144 62..280 100 <- Minus
arm_3L 98285..98329 17..61 100   Minus

BO16050.complete Sequence

298 bp assembled on 2008-08-15

GenBank Submission: FJ633688

> BO16050.complete
GAAGTTATCAGTCGACATGAAACTGGCAATGTTGTCCTGGATTACTTGGG
TGATGCTTCGGAGCATCGCAGAGGCTCAAGTTCCAGATCAACCCGAGGCT
ATGGGTGCCGCCCAAGGGGGCTTGGGCGCAGCGGCGGGGGCGGGCGGACA
ATTTGGAGCTCACGGCGGCGGAGCGGCTAAAGCCGTTGAGGACGGACCTG
GAGCTGGGATGGACGTCGGCATTGGAGCGGGCGCCGAGGTGGGTGGGAGT
GCTCGTGCCGGAGGCGCTGGACGTAGACGCGCAAGCTTTCTAGACCAT

BO16050.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-RA 267 CG12483-PA 1..264 17..280 1320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-RA 608 CG12483-RA 47..310 17..280 1320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 97926..98145 280..61 1100 100 Minus
3L 28110227 3L 98285..98329 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:00:36 has no hits.

BO16050.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:44 Download gff for BO16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 43..306 17..280 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:05 Download gff for BO16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..310 17..282 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:18 Download gff for BO16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 43..306 17..282 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:31 Download gff for BO16050.complete
Subject Subject Range Query Range Percent Splice Strand
CG12483-RA 47..310 17..282 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:31 Download gff for BO16050.complete
Subject Subject Range Query Range Percent Splice Strand
3L 97924..98144 62..282 99 <- Minus
3L 98285..98329 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:05 Download gff for BO16050.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 97924..98144 62..282 99 <- Minus
arm_3L 98285..98329 17..61 100   Minus

BO16050.pep Sequence

Translation from 16 to 298

> BO16050.pep
MKLAMLSWITWVMLRSIAEAQVPDQPEAMGAAQGGLGAAAGAGGQFGAHG
GGAAKAVEDGPGAGMDVGIGAGAEVGGSARAGGAGRRRASFLDH

BO16050.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12483-PA 88 CG12483-PA 1..88 1..88 452 100 Plus