Clone Sequence Records
BO16051.5prime Sequence
467 bp (467 high quality bases) assembled on 2006-06-16
> BO16051.5prime
GAAGTTATCAGTCGACATGAAATTCCTTATCATTGCCGTCGCCTTCTTGG
CCTGCGCCTACGCTGATGTTTCCGAGCCGGCTGCCGGAGGATACGATTAC
CCCCAGCCCGCTCCACCGGCGCCTGTGAAGAGCTACATTCCCCCACCGCC
ACCACCACCCCCACCAGCACCCAAGAACACCTACATTCCTCCCCCGGCTG
CTCCTGCCAAGGCCTACATCCCACCCCCACCACCACCACCACCACCGGCG
CCAAAGAACACCTACATCCCTCCAGCACCGGCTCCAGTTGCTCCCGTGGA
GACCTACATCCCTCCCGCAGCCCCAGCCCCCGCCTACATCCCACCCGCTC
CTGTCCAGGCCGAGGAGCCCATCATCGAGGAGATCGAGCAGCCAGCCCAG
GACGGCTACCGCTACAAGACCGTCCGTCGCCGCGTCTTCCGTCACCGCAA
CGCAAGCTTTCTAGACC
BO16051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30458-PA | 438 | CG30458-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
CG17290-PA | 300 | CG17290-RA | 181..297 | 335..451 | 460 | 95.7 | Plus |
CG17290-PA | 300 | CG17290-RA | 1..41 | 17..57 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30458-RA | 614 | CG30458-RA | 57..491 | 17..451 | 2175 | 100 | Plus |
CG17290-RC | 2443 | CG17290-RC | 259..450 | 260..451 | 660 | 89.6 | Plus |
CG17290-RA | 440 | CG17290-RA | 151..342 | 260..451 | 660 | 89.6 | Plus |
CG17290-RC | 2443 | CG17290-RC | 153..214 | 16..77 | 205 | 88.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17158448..17158880 | 451..19 | 2165 | 100 | Minus |
2R | 25286936 | 2R | 17154941..17155132 | 260..451 | 660 | 89.6 | Plus |
2R | 25286936 | 2R | 17154838..17154896 | 19..77 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:01:26 has no hits.
BO16051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:17 Download gff for
BO16051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30458-PA | 1..438 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:18:12 Download gff for
BO16051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30458-RA | 49..495 | 8..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:35:45 Download gff for
BO16051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30458-RA | 49..495 | 8..456 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:35:45 Download gff for
BO16051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17158444..17158885 | 12..456 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:18:12 Download gff for
BO16051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13045949..13046390 | 12..456 | 98 | | Minus |
BO16051.complete Sequence
469 bp assembled on 2008-08-15
GenBank Submission: FJ633689
> BO16051.complete
GAAGTTATCAGTCGACATGAAATTCCTTATCATTGCCGTCGCCTTCTTGG
CCTGCGCCTACGCTGATGTTTCCGAGCCGGCTGCCGGAGGATACGATTAC
CCCCAGCCCGCTCCACCGGCGCCTGTGAAGAGCTACATTCCCCCACCGCC
ACCACCACCCCCACCAGCACCCAAGAACACCTACATTCCTCCCCCGGCTG
CTCCTGCCAAGGCCTACATCCCACCCCCACCACCACCACCACCACCGGCG
CCAAAGAACACCTACATCCCTCCAGCACCGGCTCCAGTTGCTCCCGTGGA
GACCTACATCCCTCCCGCAGCCCCAGCCCCCGCCTACATCCCACCCGCTC
CTGTCCAGGCCGAGGAGCCCATCATCGAGGAGATCGAGCAGCCAGCCCAG
GACGGCTACCGCTACAAGACCGTCCGTCGCCGCGTCTTCCGTCACCGCAA
CGCAAGCTTTCTAGACCAT
BO16051.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30458-RA | 438 | CG30458-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
CG17290-RC | 300 | CG17290-PC | 106..297 | 260..451 | 660 | 89.6 | Plus |
CG17290-RA | 300 | CG17290-PA | 106..297 | 260..451 | 660 | 89.6 | Plus |
CG17290-RC | 300 | CG17290-PC | 1..61 | 17..77 | 200 | 88.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30458-RA | 614 | CG30458-RA | 57..491 | 17..451 | 2175 | 100 | Plus |
CG17290-RC | 2443 | CG17290-RC | 259..450 | 260..451 | 660 | 89.6 | Plus |
CG17290-RA | 440 | CG17290-RA | 151..342 | 260..451 | 660 | 89.6 | Plus |
CG17290-RC | 2443 | CG17290-RC | 153..214 | 16..77 | 205 | 88.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17158448..17158880 | 451..19 | 2165 | 100 | Minus |
2R | 25286936 | 2R | 17154941..17155132 | 260..451 | 660 | 89.6 | Plus |
2R | 25286936 | 2R | 17154838..17154896 | 19..77 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:00:39 has no hits.
BO16051.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:26 Download gff for
BO16051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30458-RA | 42..488 | 8..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:05 Download gff for
BO16051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30458-RA | 57..491 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:22 Download gff for
BO16051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30458-RA | 50..484 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:19 Download gff for
BO16051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30458-RA | 57..491 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:19 Download gff for
BO16051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17158446..17158881 | 17..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:05 Download gff for
BO16051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13045951..13046386 | 17..453 | 99 | | Minus |
BO16051.pep Sequence
Translation from 16 to 469
> BO16051.pep
MKFLIIAVAFLACAYADVSEPAAGGYDYPQPAPPAPVKSYIPPPPPPPPP
APKNTYIPPPAAPAKAYIPPPPPPPPPAPKNTYIPPAPAPVAPVETYIPP
AAPAPAYIPPAPVQAEEPIIEEIEQPAQDGYRYKTVRRRVFRHRNASFLD
H
BO16051.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30458-PA | 145 | CG30458-PA | 1..145 | 1..145 | 806 | 100 | Plus |
CG17290-PC | 99 | CG17290-PC | 1..99 | 1..145 | 368 | 57.2 | Plus |
CG17290-PA | 99 | CG17290-PA | 1..99 | 1..145 | 368 | 57.2 | Plus |
CG30457-PA | 189 | CG30457-PA | 1..187 | 1..142 | 323 | 43.8 | Plus |
CG10953-PB | 278 | CG10953-PB | 112..277 | 16..144 | 293 | 47.3 | Plus |