Clone Sequence Records
BO16053.3prime Sequence
332 bp (332 high quality bases) assembled on 2006-06-16
> BO16053.3prime
ATGGTCTAGAAAGCTTGCTTCGTCTGGCCTGGTATTGCTTTTCGGTTCCT
CGTGGAGCAGGTACTCCTTGGCCATGGTGTACGCCAATCCGGCTGTCAAA
CATCCAACGACGGTTCCCTGGGCAGCCACACGCAACTGCATCAGAAAGAC
GCTGGTGCTCATGCTGCCTCGGTTCCGATATTTGTAGGCTCCAATCAAAC
CTGCGGCCACGAATCCGGCAATACCCACCAGCATAAAGGGGGACTCCTTC
ACTTTTCGGGATAACTTGTTTGCCTGAGCGACATCTTCGTCGGTTTCGAA
TAGAGAATTGGAACTCATGTCGACTGATAACT
BO16053.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-PA | 303 | CG11825-RA | 1..300 | 318..19 | 1500 | 100 | Minus |
| CG17734-PB | 288 | CG17734-RB | 157..219 | 162..100 | 165 | 90.4 | Minus |
| CG17734-PA | 306 | CG17734-RA | 157..219 | 162..100 | 165 | 90.4 | Minus |
| CG17734-PB | 288 | CG17734-RB | 79..149 | 240..170 | 155 | 88.7 | Minus |
| CG17734-PA | 306 | CG17734-RA | 79..149 | 240..170 | 155 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 1218 | CG11825-RC | 687..986 | 318..19 | 1500 | 100 | Minus |
| CG11825-RA | 598 | CG11825-RA | 67..366 | 318..19 | 1500 | 100 | Minus |
| CG11825-RD | 1068 | CG11825-RD | 569..836 | 286..19 | 1340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10420704..10421003 | 19..318 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 11242837..11243014 | 48..225 | 500 | 85.4 | Plus |
| 3R | 32079331 | 3R | 11243780..11243875 | 223..318 | 210 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:04:09 has no hits.
BO16053.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:19 Download gff for
BO16053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-PA | 1..303 | 15..318 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:17:38 Download gff for
BO16053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 62..369 | 15..323 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:01 Download gff for
BO16053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 62..369 | 15..323 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:01 Download gff for
BO16053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10420700..10421008 | 15..323 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:17:38 Download gff for
BO16053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6308205..6308513 | 15..323 | 98 | | Plus |
BO16053.5prime Sequence
332 bp (332 high quality bases) assembled on 2006-06-16
> BO16053.5prime
GAAGTTATCAGTCGACATGAGTTCCAATTCTCTATTCGAAACCGACGAAG
ATGTCGCTCAGGCAAACAAGTTATCCCGAAAAGTGAAGGAGTCCCCCTTT
ATGCTGGTGGGTATTGCCGGATTCGTGGCCGCAGGTTTGATTGGAGCCTA
CAAATATCGGAACCGAGGCAGCATGAGCACCAGCGTCTTTCTGATGCAGT
TGCGTGTGGCTGCCCAGGGAACCGTCGTTGGATGTTTGACAGCCGGATTG
GCGTACACCATGGCCAAGGAGTACCTGCTCCACGAGGAACCGAAAAGCAA
TACCAGGCCAGACGAAGCAAGCTTTCTAGACC
BO16053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-PA | 303 | CG11825-RA | 1..300 | 17..316 | 1500 | 100 | Plus |
| CG17734-PB | 288 | CG17734-RB | 157..219 | 173..235 | 165 | 90.4 | Plus |
| CG17734-PA | 306 | CG17734-RA | 157..219 | 173..235 | 165 | 90.4 | Plus |
| CG17734-PB | 288 | CG17734-RB | 79..149 | 95..165 | 155 | 88.7 | Plus |
| CG17734-PA | 306 | CG17734-RA | 79..149 | 95..165 | 155 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 04:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 1218 | CG11825-RC | 687..986 | 17..316 | 1500 | 100 | Plus |
| CG11825-RA | 598 | CG11825-RA | 67..366 | 17..316 | 1500 | 100 | Plus |
| CG11825-RD | 1068 | CG11825-RD | 569..836 | 49..316 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 04:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10420704..10421003 | 316..17 | 1500 | 100 | Minus |
| 3R | 32079331 | 3R | 11242837..11243014 | 287..110 | 500 | 85.4 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 112..17 | 210 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-03 04:52:26 has no hits.
BO16053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:21 Download gff for
BO16053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-PA | 1..303 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:12:28 Download gff for
BO16053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 62..369 | 12..320 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:25:32 Download gff for
BO16053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 62..369 | 12..320 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:25:32 Download gff for
BO16053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10420700..10421008 | 12..320 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:12:28 Download gff for
BO16053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6308205..6308513 | 12..320 | 98 | | Minus |
BO16053.complete Sequence
334 bp assembled on 2008-08-15
GenBank Submission: FJ633690
> BO16053.complete
GAAGTTATCAGTCGACATGAGTTCCAATTCTCTATTCGAAACCGACGAAG
ATGTCGCTCAGGCAAACAAGTTATCCCGAAAAGTGAAGGAGTCCCCCTTT
ATGCTGGTGGGTATTGCCGGATTCGTGGCCGCAGGTTTGATTGGAGCCTA
CAAATATCGGAACCGAGGCAGCATGAGCACCAGCGTCTTTCTGATGCAGT
TGCGTGTGGCTGCCCAGGGAACCGTCGTTGGATGTTTGACAGCCGGATTG
GCGTACACCATGGCCAAGGAGTACCTGCTCCACGAGGAACCGAAAAGCAA
TACCAGGCCAGACGAAGCAAGCTTTCTAGACCAT
BO16053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 411 | CG11825-PC | 109..408 | 17..316 | 1500 | 100 | Plus |
| CG11825-RA | 303 | CG11825-PA | 1..300 | 17..316 | 1500 | 100 | Plus |
| CG11825-RD | 219 | CG11825-PD | 1..216 | 101..316 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 1218 | CG11825-RC | 687..986 | 17..316 | 1500 | 100 | Plus |
| CG11825-RA | 598 | CG11825-RA | 67..366 | 17..316 | 1500 | 100 | Plus |
| CG11825-RD | 1068 | CG11825-RD | 569..836 | 49..316 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10420704..10421003 | 316..17 | 1500 | 100 | Minus |
| 3R | 32079331 | 3R | 11242837..11243014 | 287..110 | 500 | 85.4 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 112..17 | 210 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:11:33 has no hits.
BO16053.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:01 Download gff for
BO16053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 60..367 | 12..320 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:36 Download gff for
BO16053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 67..366 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:30 Download gff for
BO16053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 65..364 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:43 Download gff for
BO16053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 67..366 | 17..318 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:43 Download gff for
BO16053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10420702..10421003 | 17..318 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:36 Download gff for
BO16053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6308207..6308508 | 17..318 | 99 | | Minus |
BO16053.pep Sequence
Translation from 16 to 334
> BO16053.pep
MSSNSLFETDEDVAQANKLSRKVKESPFMLVGIAGFVAAGLIGAYKYRNR
GSMSTSVFLMQLRVAAQGTVVGCLTAGLAYTMAKEYLLHEEPKSNTRPDE
ASFLDH
BO16053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-PA | 100 | CG11825-PA | 1..100 | 1..100 | 500 | 100 | Plus |
| CG11825-PC | 136 | CG11825-PC | 37..136 | 1..100 | 500 | 100 | Plus |
| CG17734-PA | 101 | CG17734-PA | 1..97 | 1..97 | 411 | 83.5 | Plus |
| CG17734-PB | 95 | CG17734-PB | 1..93 | 1..93 | 398 | 84.9 | Plus |
| CG11825-PD | 72 | CG11825-PD | 1..72 | 29..100 | 363 | 100 | Plus |
