Clone Sequence Records
BO16054.3prime Sequence
578 bp (578 high quality bases) assembled on 2006-06-16
> BO16054.3prime
ATGGTCTAGAAAGCTTGCGTTTACGTCGTCATCGAACTGGCAACGCTTCT
CGCAAACGAAGTAGCGCAGCTCTGAGCAGTTCTCGTTCACCCATAGTCCG
TTAATTCCATTGATGCCAAGGCAGTGGCGATTATCGCTGGAGTAGCCCGG
TAGACCGTTCTGGAAGTTGCGGTAGTTGACGGCGCGCCCCTTGCTGAACC
ACACCCAGTTGTTGTCACTGGCCAGGTCGGTGCCCGAGGTCCAGAGCGGA
TCGGTCAGCAGATCCTGCTGGTTCCGGGCGTAGTTGAAGAGGAAGTTGCG
GAGACTGCGCTGATCCTGCTCGGATGTAATGCTTACGAGCGTGTACCCAT
AGGCGGCACAGGTGGCCTGAGCTTGGAACCAGTTCACTTTGGCAAAGGCA
CCTATGGCGAACCTGCCATCGCGCAGACTAAATGGCGAGAAGGCGGGCAG
CTGAGGCTCCTCGGCGGTGTCGTTTCCGGGTGCTGGAGATGTGGGTAAGA
GGTCCGATTCTGGCAAGGACCAAGCGGAGCAGAAGACCAAACAGACCAGG
AATAGGGAACGCATGTCGACTGATAACT
BO16054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-PA | 549 | CG8343-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-RA | 631 | CG8343-RA | 11..558 | 566..19 | 2740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6179736..6180283 | 566..19 | 2740 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 06:36:19 has no hits.
BO16054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:21 Download gff for
BO16054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-PA | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:11:12 Download gff for
BO16054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..564 | 12..574 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:42:58 Download gff for
BO16054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..564 | 12..574 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:42:58 Download gff for
BO16054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6179727..6180289 | 12..575 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:11:12 Download gff for
BO16054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2067232..2067794 | 12..575 | 98 | | Minus |
BO16054.5prime Sequence
578 bp (578 high quality bases) assembled on 2006-06-16
> BO16054.5prime
GAAGTTATCAGTCGACATGCGTTCCCTATTCCTGGTCTGTTTGGTCTTCT
GCTCCGCTTGGTCCTTGCCAGAATCGGACCTCTTACCCACATCTCCAGCA
CCCGGAAACGACACCGCCGAGGAGCCTCAGCTGCCCGCCTTCTCGCCATT
TAGTCTGCGCGATGGCAGGTTCGCCATAGGTGCCTTTGCCAAAGTGAACT
GGTTCCAAGCTCAGGCCACCTGTGCCGCCTATGGGTACACGCTCGTAAGC
ATTACATCCGAGCAGGATCAGCGCAGTCTCCGCAACTTCCTCTTCAACTA
CGCCCGGAACCAGCAGGATCTGCTGACCGATCCGCTCTGGACCTCGGGCA
CCGACCTGGCCAGTGACAACAACTGGGTGTGGTTCAGCAAGGGGCGCGCC
GTCAACTACCGCAACTTCCAGAACGGTCTACCGGGCTACTCCAGCGATAA
TCGCCACTGCCTTGGCATCAATGGAATTAACGGACTATGGGTGAACGAGA
ACTGCTCAGAGCTGCGCTACTTCGTTTGCGAGAAGCGTTGCCAGTTCGAT
GACGACGTAAACGCAAGCTTTCTAGACC
BO16054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-PA | 549 | CG8343-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-RA | 631 | CG8343-RA | 11..558 | 15..562 | 2740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6179736..6180283 | 15..562 | 2740 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 06:36:25 has no hits.
BO16054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:22 Download gff for
BO16054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-PA | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:11:14 Download gff for
BO16054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..564 | 7..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:43:00 Download gff for
BO16054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..564 | 7..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:43:00 Download gff for
BO16054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6179727..6180289 | 6..569 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:11:14 Download gff for
BO16054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2067232..2067794 | 6..569 | 98 | | Plus |
BO16054.complete Sequence
580 bp assembled on 2008-08-15
GenBank Submission: FJ633691
> BO16054.complete
GAAGTTATCAGTCGACATGCGTTCCCTATTCCTGGTCTGTTTGGTCTTCT
GCTCCGCTTGGTCCTTGCCAGAATCGGACCTCTTACCCACATCTCCAGCA
CCCGGAAACGACACCGCCGAGGAGCCTCAGCTGCCCGCCTTCTCGCCATT
TAGTCTGCGCGATGGCAGGTTCGCCATAGGTGCCTTTGCCAAAGTGAACT
GGTTCCAAGCTCAGGCCACCTGTGCCGCCTATGGGTACACGCTCGTAAGC
ATTACATCCGAGCAGGATCAGCGCAGTCTCCGCAACTTCCTCTTCAACTA
CGCCCGGAACCAGCAGGATCTGCTGACCGATCCGCTCTGGACCTCGGGCA
CCGACCTGGCCAGTGACAACAACTGGGTGTGGTTCAGCAAGGGGCGCGCC
GTCAACTACCGCAACTTCCAGAACGGTCTACCGGGCTACTCCAGCGATAA
TCGCCACTGCCTTGGCATCAATGGAATTAACGGACTATGGGTGAACGAGA
ACTGCTCAGAGCTGCGCTACTTCGTTTGCGAGAAGCGTTGCCAGTTCGAT
GACGACGTAAACGCAAGCTTTCTAGACCAT
BO16054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-RA | 549 | CG8343-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-RA | 631 | CG8343-RA | 11..558 | 15..562 | 2740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6179736..6180283 | 15..562 | 2740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:37:10 has no hits.
BO16054.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:42 Download gff for
BO16054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 8..570 | 6..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:24 Download gff for
BO16054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 13..558 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:44 Download gff for
BO16054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 19..564 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:19 Download gff for
BO16054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 13..558 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:19 Download gff for
BO16054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6179738..6180283 | 17..564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:24 Download gff for
BO16054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2067243..2067788 | 17..564 | 99 | | Plus |
BO16054.pep Sequence
Translation from 16 to 580
> BO16054.pep
MRSLFLVCLVFCSAWSLPESDLLPTSPAPGNDTAEEPQLPAFSPFSLRDG
RFAIGAFAKVNWFQAQATCAAYGYTLVSITSEQDQRSLRNFLFNYARNQQ
DLLTDPLWTSGTDLASDNNWVWFSKGRAVNYRNFQNGLPGYSSDNRHCLG
INGINGLWVNENCSELRYFVCEKRCQFDDDVNASFLDH
BO16054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-PA | 182 | CG8343-PA | 1..182 | 1..182 | 997 | 100 | Plus |
| CG9134-PC | 188 | CG9134-PC | 12..184 | 3..172 | 187 | 27.9 | Plus |
| CG9134-PA | 188 | CG9134-PA | 12..184 | 3..172 | 187 | 27.9 | Plus |
| CG9134-PB | 376 | CG9134-PB | 245..372 | 47..172 | 184 | 30.8 | Plus |
| CG11211-PA | 176 | CG11211-PA | 42..166 | 52..178 | 152 | 25 | Plus |
