Clone Sequence Records
BO16056.3prime Sequence
326 bp (326 high quality bases) assembled on 2006-06-16
> BO16056.3prime
ATGGTCTAGAAAGCTTGCACGTCTAGAAAAGAACTGATGATCAGTGCTAG
TATTTTCCTGTTCTTTTGGCTTCTCGGCGGTTGCCTTCAGGAAATTCGCG
TCTGCCAGGCGGGCCACGCCCAGAACTCCAACGGCTGCAGCCAAGCCTTT
CATAGTGAAATTCTCCAGAGGTTTCGCTTGTCTTTTTTTCGACTGTGCCA
ATAGGAAGGCACCAATTCCCAGGAGTCCAAGGCCACTGACCAGACGGCAG
GCCAAGCAGTCCACCTCGTTGGAAACGTTGTCCTTGTTCCAAAAAGAAAG
TCTACCGATCATGTCGACTGATAACT
BO16056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-PA | 297 | CG31360-RA | 1..294 | 312..19 | 1470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-RA | 649 | CG31360-RA | 77..370 | 312..19 | 1470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17685173..17685350 | 312..135 | 890 | 100 | Minus |
3R | 32079331 | 3R | 17685411..17685528 | 136..19 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 14:46:31 has no hits.
BO16056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:25 Download gff for
BO16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-PA | 1..297 | 15..312 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:54:48 Download gff for
BO16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..375 | 11..312 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:24:30 Download gff for
BO16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..375 | 11..312 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:24:30 Download gff for
BO16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17685173..17685350 | 135..312 | 100 | -> | Minus |
3R | 17685413..17685533 | 11..134 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:54:48 Download gff for
BO16056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13510895..13511072 | 135..312 | 100 | -> | Minus |
arm_3R | 13511135..13511255 | 11..134 | 96 | | Minus |
BO16056.5prime Sequence
326 bp (326 high quality bases) assembled on 2006-06-16
> BO16056.5prime
GAAGTTATCAGTCGACATGATCGGTAGACTTTCTTTTTGGAACAAGGACA
ACGTTTCCAACGAGGTGGACTGCTTGGCCTGCCGTCTGGTCAGTGGCCTT
GGACTCCTGGGAATTGGTGCCTTCCTATTGGCACAGTCGAAAAAAAGACA
AGCGAAACCTCTGGAGAATTTCACTATGAAAGGCTTGGCTGCAGCCGTTG
GAGTTCTGGGCGTGGCCCGCCTGGCAGACGCGAATTTCCTGAAGGCAACC
GCCGAGAAGCCAAAAGAACAGGAAAATACTAGCACTGATCATCAGTTCTT
TTCTAGACGTGCAAGCTTTCTAGACC
BO16056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-PA | 297 | CG31360-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-RA | 649 | CG31360-RA | 77..370 | 17..310 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17685173..17685350 | 17..194 | 890 | 100 | Plus |
3R | 32079331 | 3R | 17685411..17685528 | 193..310 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:03:38 has no hits.
BO16056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:26 Download gff for
BO16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-PA | 1..297 | 17..314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:18:33 Download gff for
BO16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..375 | 17..318 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:36:00 Download gff for
BO16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..375 | 17..318 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:36:00 Download gff for
BO16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17685173..17685350 | 17..194 | 100 | -> | Plus |
3R | 17685413..17685533 | 195..318 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:18:33 Download gff for
BO16056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13510895..13511072 | 17..194 | 100 | -> | Plus |
arm_3R | 13511135..13511255 | 195..318 | 96 | | Plus |
BO16056.complete Sequence
328 bp assembled on 2008-08-15
GenBank Submission: FJ633693
> BO16056.complete
GAAGTTATCAGTCGACATGATCGGTAGACTTTCTTTTTGGAACAAGGACA
ACGTTTCCAACGAGGTGGACTGCTTGGCCTGCCGTCTGGTCAGTGGCCTT
GGACTCCTGGGAATTGGTGCCTTCCTATTGGCACAGTCGAAAAAAAGACA
AGCGAAACCTCTGGAGAATTTCACTATGAAAGGCTTGGCTGCAGCCGTTG
GAGTTCTGGGCGTGGCCCGCCTGGCAGACGCGAATTTCCTGAAGGCAACC
GCCGAGAAGCCAAAAGAACAGGAAAATACTAGCACTGATCATCAGTTCTT
TTCTAGACGTGCAAGCTTTCTAGACCAT
BO16056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-RA | 297 | CG31360-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-RA | 649 | CG31360-RA | 77..370 | 17..310 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17685173..17685350 | 17..194 | 890 | 100 | Plus |
3R | 32079331 | 3R | 17685411..17685528 | 193..310 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:50:49 has no hits.
BO16056.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:37 Download gff for
BO16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 72..370 | 17..318 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:44 Download gff for
BO16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..370 | 17..312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:33 Download gff for
BO16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 72..365 | 17..312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:30 Download gff for
BO16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31360-RA | 77..370 | 17..312 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:30 Download gff for
BO16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17685173..17685350 | 17..194 | 100 | -> | Plus |
3R | 17685413..17685528 | 195..312 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:44 Download gff for
BO16056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13510895..13511072 | 17..194 | 100 | -> | Plus |
arm_3R | 13511135..13511250 | 195..312 | 98 | | Plus |
BO16056.pep Sequence
Translation from 16 to 328
> BO16056.pep
MIGRLSFWNKDNVSNEVDCLACRLVSGLGLLGIGAFLLAQSKKRQAKPLE
NFTMKGLAAAVGVLGVARLADANFLKATAEKPKEQENTSTDHQFFSRRAS
FLDH
BO16056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31360-PA | 98 | CG31360-PA | 1..98 | 1..98 | 496 | 100 | Plus |