Clone Sequence Records
BO16057.3prime Sequence
263 bp (263 high quality bases) assembled on 2006-06-16
> BO16057.3prime
ATGGTCTAGAAAGCTTGCGCAGAAGTGCAGGTTATTGAACTGCTCCCGAT
TGTGGGTGACCATCTGATTGTATTTGAAGGCGGCCGACTGCTGGGAGCTG
CTCTGAGCCGTGAGCCTGGTGTTCCGCAGGAAACTATCCGCCGGACTGCT
CGAAACGGCGTACTTTCCGCCCAGACCCTCCACGGTCCGCATGGGACTCA
GGTGCTTGGCGGGAATGGCCTTGCTGGGTGTGCGAGTTTGGTGAACCATG
TCGACTGATAACT
BO16057.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17325-PA | 234 | CG17325-RA | 1..231 | 249..19 | 1155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42305-RC | 1018 | CG42305-RC | 660..890 | 249..19 | 1155 | 100 | Minus |
CG42305-RB | 779 | CG42305-RB | 299..529 | 249..19 | 1155 | 100 | Minus |
CG42305-RA | 657 | CG42305-RA | 299..529 | 249..19 | 1155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18813461..18813691 | 249..19 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:58:11 has no hits.
BO16057.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:26 Download gff for
BO16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-PA | 1..234 | 18..249 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:14:35 Download gff for
BO16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RB | 285..529 | 19..263 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:34:46 Download gff for
BO16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RA | 285..529 | 19..263 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:34:46 Download gff for
BO16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18813447..18813691 | 19..263 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:14:35 Download gff for
BO16057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18813447..18813691 | 19..263 | 97 | | Minus |
BO16057.5prime Sequence
263 bp (263 high quality bases) assembled on 2006-06-16
> BO16057.5prime
GAAGTTATCAGTCGACATGGTTCACCAAACTCGCACACCCAGCAAGGCCA
TTCCCGCCAAGCACCTGAGTCCCATGCGGACCGTGGAGGGTCTGGGCGGA
AAGTACGCCGTTTCGAGCAGTCCGGCGGATAGTTTCCTGCGGAACACCAG
GCTCACGGCTCAGAGCAGCTCCCAGCAGTCGGCCGCCTTCAAATACAATC
AGATGGTCACCCACAATCGGGAGCAGTTCAATAACCTGCACTTCTGCGCA
AGCTTTCTAGACC
BO16057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17325-PA | 234 | CG17325-RA | 1..231 | 17..247 | 1155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42305-RC | 1018 | CG42305-RC | 660..890 | 17..247 | 1155 | 100 | Plus |
CG42305-RB | 779 | CG42305-RB | 299..529 | 17..247 | 1155 | 100 | Plus |
CG42305-RA | 657 | CG42305-RA | 299..529 | 17..247 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18813461..18813691 | 17..247 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:58:22 has no hits.
BO16057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:27 Download gff for
BO16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-PA | 1..234 | 17..248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:14:37 Download gff for
BO16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RB | 284..529 | 2..247 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:34:48 Download gff for
BO16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RA | 284..529 | 2..247 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:34:48 Download gff for
BO16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18813446..18813691 | 2..247 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:14:37 Download gff for
BO16057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18813446..18813691 | 2..247 | 97 | | Plus |
BO16057.complete Sequence
265 bp assembled on 2008-08-15
GenBank Submission: FJ633694
> BO16057.complete
GAAGTTATCAGTCGACATGGTTCACCAAACTCGCACACCCAGCAAGGCCA
TTCCCGCCAAGCACCTGAGTCCCATGCGGACCGTGGAGGGTCTGGGCGGA
AAGTACGCCGTTTCGAGCAGTCCGGCGGATAGTTTCCTGCGGAACACCAG
GCTCACGGCTCAGAGCAGCTCCCAGCAGTCGGCCGCCTTCAAATACAATC
AGATGGTCACCCACAATCGGGAGCAGTTCAATAACCTGCACTTCTGCGCA
AGCTTTCTAGACCAT
BO16057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17325-RC | 234 | CG17325-PC | 1..231 | 17..247 | 1155 | 100 | Plus |
CG17325-RB | 234 | CG17325-PB | 1..231 | 17..247 | 1155 | 100 | Plus |
CG17325-RA | 234 | CG17325-PA | 1..231 | 17..247 | 1155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42305-RC | 1018 | CG42305-RC | 660..890 | 17..247 | 1155 | 100 | Plus |
CG42305-RB | 779 | CG42305-RB | 299..529 | 17..247 | 1155 | 100 | Plus |
CG42305-RA | 657 | CG42305-RA | 299..529 | 17..247 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18813461..18813691 | 17..247 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:28:57 has no hits.
BO16057.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:02 Download gff for
BO16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-RA | 283..528 | 2..247 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:03 Download gff for
BO16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RB | 299..529 | 17..249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:31 Download gff for
BO16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17325-RA | 298..528 | 17..249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:22 Download gff for
BO16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42305-RA | 299..529 | 17..249 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:22 Download gff for
BO16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18813461..18813691 | 17..249 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:03 Download gff for
BO16057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18813461..18813691 | 17..249 | 99 | | Plus |
BO16057.pep Sequence
Translation from 16 to 265
> BO16057.pep
MVHQTRTPSKAIPAKHLSPMRTVEGLGGKYAVSSSPADSFLRNTRLTAQS
SSQQSAAFKYNQMVTHNREQFNNLHFCASFLDH
BO16057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17325-PC | 77 | CG17325-PC | 1..77 | 1..77 | 399 | 100 | Plus |
CG17325-PB | 77 | CG17325-PB | 1..77 | 1..77 | 399 | 100 | Plus |
CG17325-PA | 77 | CG17325-PA | 1..77 | 1..77 | 399 | 100 | Plus |