Clone BO16059 Report

Search the DGRC for BO16059

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG13220-RA
Protein status:BO16059.pep: Imported from assembly
Sequenced Size:493

Clone Sequence Records

BO16059.5prime Sequence

491 bp (491 high quality bases) assembled on 2006-06-16

> BO16059.5prime
GAAGTTATCAGTCGACATGGCCGGGACACAGTCAAAAGACGCCTGCAGCA
TATGCGACAAAGTGGGCCTCAAGCCCTTCACCCGGGATAATGTGTTCAAC
TACTACATACCGCTGCACGGCCTGGTGAGCTACGGAGCCCTTGCGGTGAA
TGTTATGAACCCCCAGATCGTGCCCAAAATCCTGCCCAAGAAGGACCTGA
CGAACGTGTTCCTCATCTCCGCGGTGGTGGGCAGTGCCTTCTACATTTAC
GGCAGGCCCCACCTGAAGGACGTGAAGAACAACAAGCGAGGTGCGTACGC
CCTGCTGGGCGCCACCCTATTCTCCATGGGATCCGTTCTGGCCTGGGCGC
TCATCAAGTCCGCCCTGCCACAGGACAATGCACTGCTGGCGACCCTGGCG
GGCTTGGGAACTGGCGCCGCCATCGTGAAGGTCGGCACTGATTACATTCA
GGACGTGGATAAGCTGCAGAAGAACGCAAGCTTTCTAGACC

BO16059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-PA 462 CG13220-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-RB 816 CG13220-RB 216..674 17..475 2295 100 Plus
CG13220-RA 685 CG13220-RA 85..543 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11284498..11284956 17..475 2295 100 Plus
Blast to na_te.dros performed on 2015-02-11 08:20:21 has no hits.

BO16059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:30 Download gff for BO16059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:53:41 Download gff for BO16059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..543 17..475 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:48:18 Download gff for BO16059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..543 17..475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:48:18 Download gff for BO16059.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11284498..11284956 17..475 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:53:41 Download gff for BO16059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7172003..7172461 17..475 100   Plus

BO16059.3prime Sequence

491 bp (491 high quality bases) assembled on 2006-06-16

> BO16059.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCTGCAGCTTATCCACGTCCTGAATGT
AATCAGTGCCGACCTTCACGATGGCGGCGCCAGTTCCCAAGCCCGCCAGG
GTCGCCAGCAGTGCATTGTCCTGTGGCAGGGCGGACTTGATGAGCGCCCA
GGCCAGAACGGATCCCATGGAGAATAGGGTGGCGCCCAGCAGGGCGTACG
CACCTCGCTTGTTGTTCTTCACGTCCTTCAGGTGGGGCCTGCCGTAAATG
TAGAAGGCACTGCCCACCACCGCGGAGATGAGGAACACGTTCGTCAGGTC
CTTCTTGGGCAGGATTTTGGGCACGATCTGGGGGTTCATAACATTCACCG
CAAGGGCTCCGTAGCTCACCAGGCCGTGCAGCGGTATGTAGTAGTTGAAC
ACATTATCCCGGGTGAAGGGCTTGAGGCCCACTTTGTCGCATATGCTGCA
GGCGTCTTTTGACTGTGTCCCGGCCATGTCGACTGATAACT

BO16059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-PA 462 CG13220-RA 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-RB 816 CG13220-RB 216..674 477..19 2295 100 Minus
CG13220-RA 685 CG13220-RA 85..543 477..19 2295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11284498..11284956 477..19 2295 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:05:11 has no hits.

BO16059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:29 Download gff for BO16059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:17:57 Download gff for BO16059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..543 19..477 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:54 Download gff for BO16059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..543 19..477 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:54 Download gff for BO16059.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11284498..11284956 19..477 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:17:57 Download gff for BO16059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7172003..7172461 19..477 100   Minus

BO16059.complete Sequence

493 bp assembled on 2008-08-15

GenBank Submission: FJ633696

> BO16059.complete
GAAGTTATCAGTCGACATGGCCGGGACACAGTCAAAAGACGCCTGCAGCA
TATGCGACAAAGTGGGCCTCAAGCCCTTCACCCGGGATAATGTGTTCAAC
TACTACATACCGCTGCACGGCCTGGTGAGCTACGGAGCCCTTGCGGTGAA
TGTTATGAACCCCCAGATCGTGCCCAAAATCCTGCCCAAGAAGGACCTGA
CGAACGTGTTCCTCATCTCCGCGGTGGTGGGCAGTGCCTTCTACATTTAC
GGCAGGCCCCACCTGAAGGACGTGAAGAACAACAAGCGAGGTGCGTACGC
CCTGCTGGGCGCCACCCTATTCTCCATGGGATCCGTTCTGGCCTGGGCGC
TCATCAAGTCCGCCCTGCCACAGGACAATGCACTGCTGGCGACCCTGGCG
GGCTTGGGAACTGGCGCCGCCATCGTGAAGGTCGGCACTGATTACATTCA
GGACGTGGATAAGCTGCAGAAGAACGCAAGCTTTCTAGACCAT

BO16059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-RB 462 CG13220-PB 1..459 17..475 2295 100 Plus
CG13220-RA 462 CG13220-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-RB 816 CG13220-RB 216..674 17..475 2295 100 Plus
CG13220-RA 685 CG13220-RA 85..543 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11284498..11284956 17..475 2295 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:47:51 has no hits.

BO16059.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:35 Download gff for BO16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 83..541 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:59 Download gff for BO16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..543 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:31 Download gff for BO16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 83..541 17..477 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:06 Download gff for BO16059.complete
Subject Subject Range Query Range Percent Splice Strand
CG13220-RA 85..543 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:06 Download gff for BO16059.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11284498..11284956 17..477 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:59 Download gff for BO16059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7172003..7172461 17..477 99   Plus

BO16059.pep Sequence

Translation from 16 to 493

> BO16059.pep
MAGTQSKDACSICDKVGLKPFTRDNVFNYYIPLHGLVSYGALAVNVMNPQ
IVPKILPKKDLTNVFLISAVVGSAFYIYGRPHLKDVKNNKRGAYALLGAT
LFSMGSVLAWALIKSALPQDNALLATLAGLGTGAAIVKVGTDYIQDVDKL
QKNASFLDH

BO16059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13220-PB 153 CG13220-PB 1..153 1..153 782 100 Plus
CG13220-PA 153 CG13220-PA 1..153 1..153 782 100 Plus