Clone Sequence Records
BO16059.5prime Sequence
491 bp (491 high quality bases) assembled on 2006-06-16
> BO16059.5prime
GAAGTTATCAGTCGACATGGCCGGGACACAGTCAAAAGACGCCTGCAGCA
TATGCGACAAAGTGGGCCTCAAGCCCTTCACCCGGGATAATGTGTTCAAC
TACTACATACCGCTGCACGGCCTGGTGAGCTACGGAGCCCTTGCGGTGAA
TGTTATGAACCCCCAGATCGTGCCCAAAATCCTGCCCAAGAAGGACCTGA
CGAACGTGTTCCTCATCTCCGCGGTGGTGGGCAGTGCCTTCTACATTTAC
GGCAGGCCCCACCTGAAGGACGTGAAGAACAACAAGCGAGGTGCGTACGC
CCTGCTGGGCGCCACCCTATTCTCCATGGGATCCGTTCTGGCCTGGGCGC
TCATCAAGTCCGCCCTGCCACAGGACAATGCACTGCTGGCGACCCTGGCG
GGCTTGGGAACTGGCGCCGCCATCGTGAAGGTCGGCACTGATTACATTCA
GGACGTGGATAAGCTGCAGAAGAACGCAAGCTTTCTAGACC
BO16059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13220-PA | 462 | CG13220-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13220-RB | 816 | CG13220-RB | 216..674 | 17..475 | 2295 | 100 | Plus |
CG13220-RA | 685 | CG13220-RA | 85..543 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11284498..11284956 | 17..475 | 2295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 08:20:21 has no hits.
BO16059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:30 Download gff for
BO16059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:53:41 Download gff for
BO16059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-RA | 85..543 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:48:18 Download gff for
BO16059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-RA | 85..543 | 17..475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:48:18 Download gff for
BO16059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11284498..11284956 | 17..475 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:53:41 Download gff for
BO16059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7172003..7172461 | 17..475 | 100 | | Plus |
BO16059.3prime Sequence
491 bp (491 high quality bases) assembled on 2006-06-16
> BO16059.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCTGCAGCTTATCCACGTCCTGAATGT
AATCAGTGCCGACCTTCACGATGGCGGCGCCAGTTCCCAAGCCCGCCAGG
GTCGCCAGCAGTGCATTGTCCTGTGGCAGGGCGGACTTGATGAGCGCCCA
GGCCAGAACGGATCCCATGGAGAATAGGGTGGCGCCCAGCAGGGCGTACG
CACCTCGCTTGTTGTTCTTCACGTCCTTCAGGTGGGGCCTGCCGTAAATG
TAGAAGGCACTGCCCACCACCGCGGAGATGAGGAACACGTTCGTCAGGTC
CTTCTTGGGCAGGATTTTGGGCACGATCTGGGGGTTCATAACATTCACCG
CAAGGGCTCCGTAGCTCACCAGGCCGTGCAGCGGTATGTAGTAGTTGAAC
ACATTATCCCGGGTGAAGGGCTTGAGGCCCACTTTGTCGCATATGCTGCA
GGCGTCTTTTGACTGTGTCCCGGCCATGTCGACTGATAACT
BO16059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13220-PA | 462 | CG13220-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13220-RB | 816 | CG13220-RB | 216..674 | 477..19 | 2295 | 100 | Minus |
CG13220-RA | 685 | CG13220-RA | 85..543 | 477..19 | 2295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11284498..11284956 | 477..19 | 2295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:05:11 has no hits.
BO16059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:29 Download gff for
BO16059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:17:57 Download gff for
BO16059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-RA | 85..543 | 19..477 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:54 Download gff for
BO16059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-RA | 85..543 | 19..477 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:54 Download gff for
BO16059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11284498..11284956 | 19..477 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:17:57 Download gff for
BO16059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7172003..7172461 | 19..477 | 100 | | Minus |
BO16059.complete Sequence
493 bp assembled on 2008-08-15
GenBank Submission: FJ633696
> BO16059.complete
GAAGTTATCAGTCGACATGGCCGGGACACAGTCAAAAGACGCCTGCAGCA
TATGCGACAAAGTGGGCCTCAAGCCCTTCACCCGGGATAATGTGTTCAAC
TACTACATACCGCTGCACGGCCTGGTGAGCTACGGAGCCCTTGCGGTGAA
TGTTATGAACCCCCAGATCGTGCCCAAAATCCTGCCCAAGAAGGACCTGA
CGAACGTGTTCCTCATCTCCGCGGTGGTGGGCAGTGCCTTCTACATTTAC
GGCAGGCCCCACCTGAAGGACGTGAAGAACAACAAGCGAGGTGCGTACGC
CCTGCTGGGCGCCACCCTATTCTCCATGGGATCCGTTCTGGCCTGGGCGC
TCATCAAGTCCGCCCTGCCACAGGACAATGCACTGCTGGCGACCCTGGCG
GGCTTGGGAACTGGCGCCGCCATCGTGAAGGTCGGCACTGATTACATTCA
GGACGTGGATAAGCTGCAGAAGAACGCAAGCTTTCTAGACCAT
BO16059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13220-RB | 462 | CG13220-PB | 1..459 | 17..475 | 2295 | 100 | Plus |
CG13220-RA | 462 | CG13220-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13220-RB | 816 | CG13220-RB | 216..674 | 17..475 | 2295 | 100 | Plus |
CG13220-RA | 685 | CG13220-RA | 85..543 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11284498..11284956 | 17..475 | 2295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:47:51 has no hits.
BO16059.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:35 Download gff for
BO16059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-RA | 83..541 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:59 Download gff for
BO16059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-RA | 85..543 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:31 Download gff for
BO16059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-RA | 83..541 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:06 Download gff for
BO16059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13220-RA | 85..543 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:06 Download gff for
BO16059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11284498..11284956 | 17..477 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:59 Download gff for
BO16059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7172003..7172461 | 17..477 | 99 | | Plus |
BO16059.pep Sequence
Translation from 16 to 493
> BO16059.pep
MAGTQSKDACSICDKVGLKPFTRDNVFNYYIPLHGLVSYGALAVNVMNPQ
IVPKILPKKDLTNVFLISAVVGSAFYIYGRPHLKDVKNNKRGAYALLGAT
LFSMGSVLAWALIKSALPQDNALLATLAGLGTGAAIVKVGTDYIQDVDKL
QKNASFLDH
BO16059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13220-PB | 153 | CG13220-PB | 1..153 | 1..153 | 782 | 100 | Plus |
CG13220-PA | 153 | CG13220-PA | 1..153 | 1..153 | 782 | 100 | Plus |