Clone Sequence Records
BO16062.5prime Sequence
332 bp (332 high quality bases) assembled on 2006-06-16
> BO16062.5prime
GAAGTTATCAGTCGACATGGAGCAGCAACTGGAGAAAGTCCTAGCGGAAA
TCGCCGCACGGCAGGACACAGTGGGAGCTCTGCTGGCCAATCGCCAGGGA
TTGTGTTTGGGCACCAAAGGAGACATTGATCCGAACGTGTCCGGCATCGG
AATGGCCATTTCCGAGCAGGTGGCCAAACTGGAGCTGAATGCCACGGCTC
CTGCAACGATTTGCCTTTACAGCGGAAACAAACGCTGTGTCATCCAGAAG
GACGGCGAGATCACAGGCGTTATCTTCAAGCAGCCGACGGGTACATCGGC
GACCGCCCCCAGCAACGCAAGCTTTCTAGACC
BO16062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-PA | 303 | CG14812-RA | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-RB | 802 | CG14812-RB | 69..369 | 16..316 | 1505 | 100 | Plus |
| CG14812-RA | 720 | CG14812-RA | 69..369 | 16..316 | 1505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1858561..1858678 | 231..114 | 590 | 100 | Minus |
| X | 23542271 | X | 1858322..1858406 | 316..232 | 425 | 100 | Minus |
| X | 23542271 | X | 1858736..1858797 | 113..52 | 310 | 100 | Minus |
| X | 23542271 | X | 1858868..1858903 | 51..16 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:22:52 has no hits.
BO16062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:33 Download gff for
BO16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-PA | 1..303 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:00:25 Download gff for
BO16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 89..397 | 8..320 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:53 Download gff for
BO16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 64..372 | 8..320 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:53 Download gff for
BO16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1858319..1858406 | 232..320 | 97 | <- | Minus |
| X | 1858561..1858678 | 114..231 | 100 | <- | Minus |
| X | 1858736..1858797 | 52..113 | 100 | <- | Minus |
| X | 1858868..1858908 | 8..51 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:00:25 Download gff for
BO16062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1752769..1752830 | 52..113 | 100 | <- | Minus |
| arm_X | 1752901..1752941 | 8..51 | 93 | | Minus |
| arm_X | 1752352..1752439 | 232..320 | 97 | <- | Minus |
| arm_X | 1752594..1752711 | 114..231 | 100 | <- | Minus |
BO16062.3prime Sequence
332 bp (332 high quality bases) assembled on 2006-06-16
> BO16062.3prime
ATGGTCTAGAAAGCTTGCGTTGCTGGGGGCGGTCGCCGATGTACCCGTCG
GCTGCTTGAAGATAACGCCTGTGATCTCGCCGTCCTTCTGGATGACACAG
CGTTTGTTTCCGCTGTAAAGGCAAATCGTTGCAGGAGCCGTGGCATTCAG
CTCCAGTTTGGCCACCTGCTCGGAAATGGCCATTCCGATGCCGGACACGT
TCGGATCAATGTCTCCTTTGGTGCCCAAACACAATCCCTGGCGATTGGCC
AGCAGAGCTCCCACTGTGTCCTGCCGTGCGGCGATTTCCGCTAGGACTTT
CTCCAGTTGCTGCTCCATGTCGACTGATAACT
BO16062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-PA | 303 | CG14812-RA | 1..300 | 318..19 | 1500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-RB | 802 | CG14812-RB | 69..369 | 319..19 | 1505 | 100 | Minus |
| CG14812-RA | 720 | CG14812-RA | 69..369 | 319..19 | 1505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1858561..1858678 | 104..221 | 590 | 100 | Plus |
| X | 23542271 | X | 1858322..1858406 | 19..103 | 425 | 100 | Plus |
| X | 23542271 | X | 1858736..1858797 | 222..283 | 310 | 100 | Plus |
| X | 23542271 | X | 1858868..1858903 | 284..319 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:05:37 has no hits.
BO16062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:32 Download gff for
BO16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-PA | 1..303 | 15..318 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:18:06 Download gff for
BO16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 89..397 | 15..327 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:46 Download gff for
BO16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 64..372 | 15..327 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:46 Download gff for
BO16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1858319..1858406 | 15..103 | 97 | <- | Plus |
| X | 1858561..1858678 | 104..221 | 100 | <- | Plus |
| X | 1858736..1858797 | 222..283 | 100 | <- | Plus |
| X | 1858868..1858908 | 284..327 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:18:06 Download gff for
BO16062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1752352..1752439 | 15..103 | 97 | <- | Plus |
| arm_X | 1752594..1752711 | 104..221 | 100 | <- | Plus |
| arm_X | 1752769..1752830 | 222..283 | 100 | <- | Plus |
| arm_X | 1752901..1752941 | 284..327 | 93 | | Plus |
BO16062.complete Sequence
334 bp assembled on 2008-08-15
GenBank Submission: FJ633697
> BO16062.complete
GAAGTTATCAGTCGACATGGAGCAGCAACTGGAGAAAGTCCTAGCGGAAA
TCGCCGCACGGCAGGACACAGTGGGAGCTCTGCTGGCCAATCGCCAGGGA
TTGTGTTTGGGCACCAAAGGAGACATTGATCCGAACGTGTCCGGCATCGG
AATGGCCATTTCCGAGCAGGTGGCCAAACTGGAGCTGAATGCCACGGCTC
CTGCAACGATTTGCCTTTACAGCGGAAACAAACGCTGTGTCATCCAGAAG
GACGGCGAGATCACAGGCGTTATCTTCAAGCAGCCGACGGGTACATCGGC
GACCGCCCCCAGCAACGCAAGCTTTCTAGACCAT
BO16062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-RB | 303 | CG14812-PB | 1..300 | 17..316 | 1500 | 100 | Plus |
| CG14812-RA | 303 | CG14812-PA | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-RB | 802 | CG14812-RB | 69..369 | 16..316 | 1505 | 100 | Plus |
| CG14812-RA | 720 | CG14812-RA | 69..369 | 16..316 | 1505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1858561..1858678 | 231..114 | 590 | 100 | Minus |
| X | 23542271 | X | 1858322..1858406 | 316..232 | 425 | 100 | Minus |
| X | 23542271 | X | 1858736..1858797 | 113..52 | 310 | 100 | Minus |
| X | 23542271 | X | 1858868..1858903 | 51..16 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:06:53 has no hits.
BO16062.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:12 Download gff for
BO16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 44..352 | 8..320 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:19 Download gff for
BO16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 95..394 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:52 Download gff for
BO16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 50..349 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:46 Download gff for
BO16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14812-RA | 70..369 | 17..318 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:46 Download gff for
BO16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1858320..1858406 | 232..318 | 97 | <- | Minus |
| X | 1858561..1858678 | 114..231 | 100 | <- | Minus |
| X | 1858736..1858797 | 52..113 | 100 | <- | Minus |
| X | 1858868..1858902 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:19 Download gff for
BO16062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1752769..1752830 | 52..113 | 100 | <- | Minus |
| arm_X | 1752901..1752935 | 17..51 | 100 | | Minus |
| arm_X | 1752353..1752439 | 232..318 | 97 | <- | Minus |
| arm_X | 1752594..1752711 | 114..231 | 100 | <- | Minus |
BO16062.pep Sequence
Translation from 16 to 334
> BO16062.pep
MEQQLEKVLAEIAARQDTVGALLANRQGLCLGTKGDIDPNVSGIGMAISE
QVAKLELNATAPATICLYSGNKRCVIQKDGEITGVIFKQPTGTSATAPSN
ASFLDH
BO16062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14812-PB | 100 | CG14812-PB | 1..100 | 1..100 | 502 | 100 | Plus |
| CG14812-PA | 100 | CG14812-PA | 1..100 | 1..100 | 502 | 100 | Plus |
