Clone Sequence Records
BO16063.5prime Sequence
281 bp (281 high quality bases) assembled on 2006-06-16
> BO16063.5prime
GAAGTTATCAGTCGACATGTGCAACGCTCTCTGTGAATGCCTCAAATGTC
CCGGCAAAGTGGTTTGCTGCTGCTGTTCCTGCGCCTGCAAGATGCTCCTG
AGCATCGTGTTTTCTGCGCTCCTGATGGTCGTGGTGATCGGCTTGATTGT
CTACTTCACGGTCTTCTATCACAAGGATAAGAACACGGATGAGGTGCAGA
AGCAGGTCGCCCAACTGACGCCCATTGTGAAGCGCAGCATACGCGACTAC
TTCAACAAGGAGTACGCAAGCTTTCTAGACC
BO16063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7936-PA | 252 | mex1-RA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-RC | 1034 | CG7936-RC | 425..674 | 16..265 | 1250 | 100 | Plus |
mex1-RA | 710 | CG7936-RA | 101..350 | 16..265 | 1250 | 100 | Plus |
mex1-RB | 741 | CG7936-RB | 83..332 | 16..265 | 1145 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15517833..15518034 | 265..64 | 995 | 99.5 | Minus |
3L | 28110227 | 3L | 15518308..15518361 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 12:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6820 | 138..64 | 111 | 62.7 | Minus |
BO16063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:34 Download gff for
BO16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7936-PA | 1..252 | 17..268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:18:57 Download gff for
BO16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 91..356 | 2..272 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:36:22 Download gff for
BO16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 91..356 | 2..272 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:36:22 Download gff for
BO16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15517827..15518028 | 70..272 | 98 | <- | Minus |
3L | 15518308..15518361 | 16..69 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:18:57 Download gff for
BO16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15510927..15511128 | 70..272 | 98 | <- | Minus |
arm_3L | 15511408..15511461 | 16..69 | 100 | -> | Minus |
BO16063.3prime Sequence
281 bp (281 high quality bases) assembled on 2006-06-16
> BO16063.3prime
ATGGTCTAGAAAGCTTGCGTACTCCTTGTTGAAGTAGTCGCGTATGCTGC
GCTTCACAATGGGCGTCAGTTGGGCGACCTGCTTCTGCACCTCATCCGTG
TTCTTATCCTTGTGATAGAAGACCGTGAAGTAGACAATCAAGCCGATCAC
CACGACCATCAGGAGCGCAGAAAACACGATGCTCAGGAGCATCTTGCAGG
CGCAGGAACAGCAGCAGCAAACCACTTTGCCGGGACATTTGAGGCATTCA
CAGAGAGCGTTGCACATGTCGACTGATAACT
BO16063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7936-PA | 252 | mex1-RA | 1..249 | 267..19 | 1245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-RC | 1034 | CG7936-RC | 425..674 | 268..19 | 1250 | 100 | Minus |
mex1-RA | 710 | CG7936-RA | 101..350 | 268..19 | 1250 | 100 | Minus |
mex1-RB | 741 | CG7936-RB | 83..332 | 268..19 | 1145 | 97.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15517833..15518034 | 19..220 | 995 | 99.5 | Plus |
3L | 28110227 | 3L | 15518308..15518361 | 215..268 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 14:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6820 | 146..220 | 111 | 62.7 | Plus |
BO16063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:34 Download gff for
BO16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7936-PA | 1..252 | 16..267 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:55:05 Download gff for
BO16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 92..356 | 12..281 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:24:43 Download gff for
BO16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 92..356 | 12..281 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:24:43 Download gff for
BO16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15517827..15518028 | 12..214 | 98 | <- | Plus |
3L | 15518308..15518370 | 215..281 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:55:05 Download gff for
BO16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15510927..15511128 | 12..214 | 98 | <- | Plus |
arm_3L | 15511408..15511470 | 215..281 | 92 | | Plus |
BO16063.complete Sequence
283 bp assembled on 2008-08-15
GenBank Submission: FJ633698
> BO16063.complete
GAAGTTATCAGTCGACATGTGCAACGCTCTCTGTGAATGCCTCAAATGTC
CCGGCAAAGTGGTTTGCTGCTGCTGTTCCTGCGCCTGCAAGATGCTCCTG
AGCATCGTGTTTTCTGCGCTCCTGATGGTCGTGGTGATCGGCTTGATTGT
CTACTTCACGGTCTTCTATCACAAGGATAAGAACACGGATGAGGTGCAGA
AGCAGGTCGCCCAACTGACGCCCATTGTGAAGCGCAGCATACGCGACTAC
TTCAACAAGGAGTACGCAAGCTTTCTAGACCAT
BO16063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-RC | 252 | CG7936-PC | 1..249 | 17..265 | 1245 | 100 | Plus |
mex1-RA | 252 | CG7936-PA | 1..249 | 17..265 | 1245 | 100 | Plus |
mex1-RB | 252 | CG7936-PB | 1..249 | 17..265 | 1140 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-RC | 1034 | CG7936-RC | 425..674 | 16..265 | 1250 | 100 | Plus |
mex1-RA | 710 | CG7936-RA | 101..350 | 16..265 | 1250 | 100 | Plus |
mex1-RB | 741 | CG7936-RB | 83..332 | 16..265 | 1145 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15517833..15518034 | 265..64 | 995 | 99.5 | Minus |
3L | 28110227 | 3L | 15518308..15518361 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 23:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6820 | 138..64 | 111 | 62.7 | Minus |
BO16063.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:12 Download gff for
BO16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 86..351 | 2..272 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:34 Download gff for
BO16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 102..350 | 17..267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:57 Download gff for
BO16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 97..345 | 17..267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:50 Download gff for
BO16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 102..350 | 17..267 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:50 Download gff for
BO16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15517830..15518028 | 70..267 | 98 | <- | Minus |
3L | 15518308..15518360 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:34 Download gff for
BO16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15510930..15511128 | 70..267 | 98 | <- | Minus |
arm_3L | 15511408..15511460 | 17..69 | 100 | | Minus |
BO16063.pep Sequence
Translation from 16 to 283
> BO16063.pep
MCNALCECLKCPGKVVCCCCSCACKMLLSIVFSALLMVVVIGLIVYFTVF
YHKDKNTDEVQKQVAQLTPIVKRSIRDYFNKEYASFLDH
BO16063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-PC | 83 | CG7936-PC | 1..83 | 1..83 | 450 | 100 | Plus |
mex1-PA | 83 | CG7936-PA | 1..83 | 1..83 | 450 | 100 | Plus |
mex1-PB | 83 | CG7936-PB | 1..83 | 1..83 | 447 | 97.6 | Plus |
CG42394-PC | 77 | CG42394-PC | 1..75 | 5..81 | 149 | 36.4 | Plus |
CG42394-PB | 77 | CG42394-PB | 1..75 | 5..81 | 149 | 36.4 | Plus |