Clone BO16064 Report

Search the DGRC for BO16064

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG9184-RB
Protein status:BO16064.pep: Imported from assembly
Sequenced Size:670

Clone Sequence Records

BO16064.3prime Sequence

668 bp (636 high quality bases) assembled on 2006-06-16

> BO16064.3prime
ATGGTCTAGAAAGCTTGCAGCCCTGGCCATTTGGAGTAGGTGATAAAGTG
GCACAACGTTAGCGTTGTTCCTGCCGTCGAGGAAGTTCTGGTGGGACAGC
ACGGCCCTGCCCTGGAAAACGCCAGGAATGGCGGCGGAAGTGAGTCCATC
GGCACCGGGAAGTTGGTTATCGACCTCGCCAGCCGTCGAGGAGCGATAGA
AGGGATAGTAGGGATAGCCAGAATAGCCGCCAAAGCCGGGATATCCAAAG
CCCCCATATCCATAGCCGCCATATCCGCCGTAGTAGTTGTAGCCATTGTA
GTAGGGATTGTAGTAGGGTCCCGGCGGAGGAGGAGGTCCTGGCGGCGGTG
GTCCGGGCGGAGGGGGTGGCCCCCAAGGACGCTGCGGTGGCGGCGGATAA
GCGGGCGGTCCTGGCGACCACTGCGGTGGATAGCCATACTGCCGTGGGTG
CTGCTGATCCTCAATGGTCTTCAGCAGGTGCTCGTCAATCCCGCGTCCAC
TTCCCAGCGGATCGTCCAGCACCTGTTGCTGCTTTTCGGTCCTGGCCTGT
CCGCTGACCAGGCTCGTCTGCAGTGGCGCCTTCTCCTGGAAACAGAGGCC
GCTGACCAGCAGCTGCAGGATAACCAAACCAATCGCAGTCACTCTCCGAT
CCATGTCGACTGATAACT

BO16064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-PB 639 CG9184-RB 1..636 654..19 3180 100 Minus
CG9184-PA 729 CG9184-RA 283..726 462..19 2220 100 Minus
CG9184-PA 729 CG9184-RA 1..193 654..462 965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-RB 876 CG9184-RB 24..660 655..19 3185 100 Minus
CG9184-RA 966 CG9184-RA 307..750 462..19 2220 100 Minus
CG9184-RA 966 CG9184-RA 24..217 655..462 970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1322008..1322451 19..462 2220 100 Plus
3L 28110227 3L 1322541..1322703 462..624 815 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:36:21 has no hits.

BO16064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:35 Download gff for BO16064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-PB 1..639 16..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:50:12 Download gff for BO16064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 18..672 7..661 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:07 Download gff for BO16064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 18..672 7..661 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:07 Download gff for BO16064.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1321996..1322450 7..461 98 <- Plus
3L 1322541..1322702 462..623 100 <- Plus
3L 1322752..1322789 624..661 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:50:12 Download gff for BO16064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1321996..1322450 7..461 98 <- Plus
arm_3L 1322541..1322702 462..623 100 <- Plus
arm_3L 1322752..1322789 624..661 92   Plus

BO16064.5prime Sequence

668 bp (668 high quality bases) assembled on 2006-06-16

> BO16064.5prime
GAAGTTATCAGTCGACATGGATCGGAGAGTGACTGCGATTGGTTTGGTTA
TCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCCACTG
CAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAACAGGT
GCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTGCTGA
AGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACCGCAG
TGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTTGGGG
GCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCGCCGG
GACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGGATAT
GGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCTATTC
TGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAGGTCG
ATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCCTGGC
GTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACGGCAG
GAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCCAGGG
CTGCAAGCTTTCTAGACC

BO16064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-PB 639 CG9184-RB 1..636 17..652 3180 100 Plus
CG9184-PA 729 CG9184-RA 283..726 209..652 2220 100 Plus
CG9184-PA 729 CG9184-RA 1..193 17..209 965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-RB 876 CG9184-RB 24..660 16..652 3185 100 Plus
CG9184-RA 966 CG9184-RA 307..750 209..652 2220 100 Plus
CG9184-RA 966 CG9184-RA 24..217 16..209 970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1322008..1322451 652..209 2220 100 Minus
3L 28110227 3L 1322541..1322703 209..47 815 100 Minus
Blast to na_te.dros performed on 2015-01-31 06:37:36 has no hits.

BO16064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:36 Download gff for BO16064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-PB 1..639 17..655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:11:40 Download gff for BO16064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 18..672 10..664 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:43:18 Download gff for BO16064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 18..672 10..664 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:43:18 Download gff for BO16064.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1322541..1322702 48..209 100 <- Minus
3L 1322752..1322789 10..47 92   Minus
3L 1321996..1322450 210..664 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:11:40 Download gff for BO16064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1321996..1322450 210..664 98 <- Minus
arm_3L 1322541..1322702 48..209 100 <- Minus
arm_3L 1322752..1322789 10..47 92   Minus

BO16064.complete Sequence

670 bp assembled on 2008-08-15

GenBank Submission: FJ633699

> BO16064.complete
GAAGTTATCAGTCGACATGGATCGGAGAGTGACTGCGATTGGTTTGGTTA
TCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCCACTG
CAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAACAGGT
GCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTGCTGA
AGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACCGCAG
TGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTTGGGG
GCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCGCCGG
GACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGGATAT
GGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCTATTC
TGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAGGTCG
ATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCCTGGC
GTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACGGCAG
GAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCCAGGG
CTGCAAGCTTTCTAGACCAT

BO16064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-RB 639 CG9184-PB 1..636 17..652 3180 100 Plus
CG9184-RA 729 CG9184-PA 283..726 209..652 2220 100 Plus
CG9184-RA 729 CG9184-PA 1..193 17..209 965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-RB 876 CG9184-RB 24..660 16..652 3185 100 Plus
CG9184-RA 966 CG9184-RA 307..750 209..652 2220 100 Plus
CG9184-RA 966 CG9184-RA 24..217 16..209 970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1322008..1322451 652..209 2220 100 Minus
3L 28110227 3L 1322541..1322703 209..47 815 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:08:19 has no hits.

BO16064.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:00 Download gff for BO16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 14..668 10..664 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:13 Download gff for BO16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 25..660 17..654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:20 Download gff for BO16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 21..656 17..654 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:04 Download gff for BO16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 25..660 17..654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:04 Download gff for BO16064.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1322005..1322450 210..654 99 <- Minus
3L 1322541..1322702 48..209 100 <- Minus
3L 1322752..1322782 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:13 Download gff for BO16064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1322005..1322450 210..654 99 <- Minus
arm_3L 1322541..1322702 48..209 100 <- Minus
arm_3L 1322752..1322782 17..47 100   Minus

BO16064.pep Sequence

Translation from 16 to 670

> BO16064.pep
MDRRVTAIGLVILQLLVSGLCFQEKAPLQTSLVSGQARTEKQQQVLDDPL
GSGRGIDEHLLKTIEDQQHPRQYGYPPQWSPGPPAYPPPPQRPWGPPPPP
GPPPPGPPPPPGPYYNPYYNGYNYYGGYGGYGYGGFGYPGFGGYSGYPYY
PFYRSSTAGEVDNQLPGADGLTSAAIPGVFQGRAVLSHQNFLDGRNNANV
VPLYHLLQMARAASFLDH

BO16064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-PB 212 CG9184-PB 1..212 1..212 1196 100 Plus
CG9184-PA 242 CG9184-PA 1..242 1..212 1155 87.6 Plus