Clone Sequence Records
BO16064.3prime Sequence
668 bp (636 high quality bases) assembled on 2006-06-16
> BO16064.3prime
ATGGTCTAGAAAGCTTGCAGCCCTGGCCATTTGGAGTAGGTGATAAAGTG
GCACAACGTTAGCGTTGTTCCTGCCGTCGAGGAAGTTCTGGTGGGACAGC
ACGGCCCTGCCCTGGAAAACGCCAGGAATGGCGGCGGAAGTGAGTCCATC
GGCACCGGGAAGTTGGTTATCGACCTCGCCAGCCGTCGAGGAGCGATAGA
AGGGATAGTAGGGATAGCCAGAATAGCCGCCAAAGCCGGGATATCCAAAG
CCCCCATATCCATAGCCGCCATATCCGCCGTAGTAGTTGTAGCCATTGTA
GTAGGGATTGTAGTAGGGTCCCGGCGGAGGAGGAGGTCCTGGCGGCGGTG
GTCCGGGCGGAGGGGGTGGCCCCCAAGGACGCTGCGGTGGCGGCGGATAA
GCGGGCGGTCCTGGCGACCACTGCGGTGGATAGCCATACTGCCGTGGGTG
CTGCTGATCCTCAATGGTCTTCAGCAGGTGCTCGTCAATCCCGCGTCCAC
TTCCCAGCGGATCGTCCAGCACCTGTTGCTGCTTTTCGGTCCTGGCCTGT
CCGCTGACCAGGCTCGTCTGCAGTGGCGCCTTCTCCTGGAAACAGAGGCC
GCTGACCAGCAGCTGCAGGATAACCAAACCAATCGCAGTCACTCTCCGAT
CCATGTCGACTGATAACT
BO16064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-PB | 639 | CG9184-RB | 1..636 | 654..19 | 3180 | 100 | Minus |
CG9184-PA | 729 | CG9184-RA | 283..726 | 462..19 | 2220 | 100 | Minus |
CG9184-PA | 729 | CG9184-RA | 1..193 | 654..462 | 965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-RB | 876 | CG9184-RB | 24..660 | 655..19 | 3185 | 100 | Minus |
CG9184-RA | 966 | CG9184-RA | 307..750 | 462..19 | 2220 | 100 | Minus |
CG9184-RA | 966 | CG9184-RA | 24..217 | 655..462 | 970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1322008..1322451 | 19..462 | 2220 | 100 | Plus |
3L | 28110227 | 3L | 1322541..1322703 | 462..624 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:36:21 has no hits.
BO16064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:35 Download gff for
BO16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-PB | 1..639 | 16..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:50:12 Download gff for
BO16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 18..672 | 7..661 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:07 Download gff for
BO16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 18..672 | 7..661 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:07 Download gff for
BO16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1321996..1322450 | 7..461 | 98 | <- | Plus |
3L | 1322541..1322702 | 462..623 | 100 | <- | Plus |
3L | 1322752..1322789 | 624..661 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:50:12 Download gff for
BO16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1321996..1322450 | 7..461 | 98 | <- | Plus |
arm_3L | 1322541..1322702 | 462..623 | 100 | <- | Plus |
arm_3L | 1322752..1322789 | 624..661 | 92 | | Plus |
BO16064.5prime Sequence
668 bp (668 high quality bases) assembled on 2006-06-16
> BO16064.5prime
GAAGTTATCAGTCGACATGGATCGGAGAGTGACTGCGATTGGTTTGGTTA
TCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCCACTG
CAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAACAGGT
GCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTGCTGA
AGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACCGCAG
TGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTTGGGG
GCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCGCCGG
GACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGGATAT
GGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCTATTC
TGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAGGTCG
ATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCCTGGC
GTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACGGCAG
GAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCCAGGG
CTGCAAGCTTTCTAGACC
BO16064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-PB | 639 | CG9184-RB | 1..636 | 17..652 | 3180 | 100 | Plus |
CG9184-PA | 729 | CG9184-RA | 283..726 | 209..652 | 2220 | 100 | Plus |
CG9184-PA | 729 | CG9184-RA | 1..193 | 17..209 | 965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-RB | 876 | CG9184-RB | 24..660 | 16..652 | 3185 | 100 | Plus |
CG9184-RA | 966 | CG9184-RA | 307..750 | 209..652 | 2220 | 100 | Plus |
CG9184-RA | 966 | CG9184-RA | 24..217 | 16..209 | 970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1322008..1322451 | 652..209 | 2220 | 100 | Minus |
3L | 28110227 | 3L | 1322541..1322703 | 209..47 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 06:37:36 has no hits.
BO16064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:36 Download gff for
BO16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-PB | 1..639 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:11:40 Download gff for
BO16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 18..672 | 10..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:43:18 Download gff for
BO16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 18..672 | 10..664 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:43:18 Download gff for
BO16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1322541..1322702 | 48..209 | 100 | <- | Minus |
3L | 1322752..1322789 | 10..47 | 92 | | Minus |
3L | 1321996..1322450 | 210..664 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:11:40 Download gff for
BO16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1321996..1322450 | 210..664 | 98 | <- | Minus |
arm_3L | 1322541..1322702 | 48..209 | 100 | <- | Minus |
arm_3L | 1322752..1322789 | 10..47 | 92 | | Minus |
BO16064.complete Sequence
670 bp assembled on 2008-08-15
GenBank Submission: FJ633699
> BO16064.complete
GAAGTTATCAGTCGACATGGATCGGAGAGTGACTGCGATTGGTTTGGTTA
TCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCCACTG
CAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAACAGGT
GCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTGCTGA
AGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACCGCAG
TGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTTGGGG
GCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCGCCGG
GACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGGATAT
GGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCTATTC
TGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAGGTCG
ATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCCTGGC
GTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACGGCAG
GAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCCAGGG
CTGCAAGCTTTCTAGACCAT
BO16064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-RB | 639 | CG9184-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
CG9184-RA | 729 | CG9184-PA | 283..726 | 209..652 | 2220 | 100 | Plus |
CG9184-RA | 729 | CG9184-PA | 1..193 | 17..209 | 965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-RB | 876 | CG9184-RB | 24..660 | 16..652 | 3185 | 100 | Plus |
CG9184-RA | 966 | CG9184-RA | 307..750 | 209..652 | 2220 | 100 | Plus |
CG9184-RA | 966 | CG9184-RA | 24..217 | 16..209 | 970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1322008..1322451 | 652..209 | 2220 | 100 | Minus |
3L | 28110227 | 3L | 1322541..1322703 | 209..47 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:08:19 has no hits.
BO16064.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:00 Download gff for
BO16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 14..668 | 10..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:13 Download gff for
BO16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 25..660 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:20 Download gff for
BO16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 21..656 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:04 Download gff for
BO16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 25..660 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:04 Download gff for
BO16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1322005..1322450 | 210..654 | 99 | <- | Minus |
3L | 1322541..1322702 | 48..209 | 100 | <- | Minus |
3L | 1322752..1322782 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:13 Download gff for
BO16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1322005..1322450 | 210..654 | 99 | <- | Minus |
arm_3L | 1322541..1322702 | 48..209 | 100 | <- | Minus |
arm_3L | 1322752..1322782 | 17..47 | 100 | | Minus |
BO16064.pep Sequence
Translation from 16 to 670
> BO16064.pep
MDRRVTAIGLVILQLLVSGLCFQEKAPLQTSLVSGQARTEKQQQVLDDPL
GSGRGIDEHLLKTIEDQQHPRQYGYPPQWSPGPPAYPPPPQRPWGPPPPP
GPPPPGPPPPPGPYYNPYYNGYNYYGGYGGYGYGGFGYPGFGGYSGYPYY
PFYRSSTAGEVDNQLPGADGLTSAAIPGVFQGRAVLSHQNFLDGRNNANV
VPLYHLLQMARAASFLDH
BO16064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-PB | 212 | CG9184-PB | 1..212 | 1..212 | 1196 | 100 | Plus |
CG9184-PA | 242 | CG9184-PA | 1..242 | 1..212 | 1155 | 87.6 | Plus |