Clone Sequence Records
BO16065.3prime Sequence
263 bp (263 high quality bases) assembled on 2006-06-16
> BO16065.3prime
ATGGTCTAGAAAGCTTGCGACCTCCTTCAGCTCATCGGGCATGTCATTCT
TGGGATGCTTGTTCTCGAAATGCTGCTTGTAAGTCTTCGGATCGGGCATT
TGCGACTTGCAAACGGCGCACACATAGACAAGTGCCTTCTGGGCCGCCTT
CTTCTGGTCGTTGGCACTGTGTCCTTGTTGCTTCTTTAGTTTGGCCTGCT
TCTCGGAGGCCTTCGCCTGCGACTGGATCTTCTGGTGTCCACGTGCCATG
TCGACTGATAACT
BO16065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18081-PA | 234 | CG18081-RA | 1..231 | 249..19 | 1155 | 100 | Minus |
| CG15715-PA | 234 | CG15715-RA | 1..231 | 249..19 | 930 | 96.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 04:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18081-RC | 717 | CG18081-RC | 198..428 | 249..19 | 1155 | 100 | Minus |
| CG18081-RB | 886 | CG18081-RB | 86..316 | 249..19 | 1155 | 100 | Minus |
| CG18081-RA | 721 | CG18081-RA | 202..432 | 249..19 | 1155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 04:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15834734..15834877 | 106..249 | 720 | 100 | Plus |
| 3L | 28110227 | 3L | 15836780..15836923 | 106..249 | 705 | 99.3 | Plus |
| 3L | 28110227 | 3L | 15834365..15834453 | 19..107 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 15836162..15836250 | 19..107 | 325 | 91 | Plus |
Blast to na_te.dros performed 2015-02-03 04:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1443..1488 | 174..129 | 104 | 69.6 | Minus |
BO16065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:37 Download gff for
BO16065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-PA | 1..234 | 16..249 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:12:42 Download gff for
BO16065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 196..432 | 19..257 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:25:41 Download gff for
BO16065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 196..432 | 19..257 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:25:41 Download gff for
BO16065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15834365..15834451 | 19..105 | 100 | <- | Plus |
| 3L | 15834734..15834883 | 106..257 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:12:42 Download gff for
BO16065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15827465..15827551 | 19..105 | 100 | <- | Plus |
| arm_3L | 15827834..15827983 | 106..257 | 97 | | Plus |
BO16065.5prime Sequence
263 bp (263 high quality bases) assembled on 2006-06-16
> BO16065.5prime
GAAGTTATCAGTCGACATGGCACGTGGACACCAGAAGATCCAGTCGCAGG
CGAAGGCCTCCGAGAAGCAGGCCAAACTAAAGAAGCAACAAGGACACAGT
GCCAACGACCAGAAGAAGGCGGCCCAGAAGGCACTTGTCTATGTGTGCGC
CGTTTGCAAGTCGCAAATGCCCGATCCGAAGACTTACAAGCAGCATTTCG
AGAACAAGCATCCCAAGAATGACATGCCCGATGAGCTGAAGGAGGTCGCA
AGCTTTCTAGACC
BO16065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18081-PA | 234 | CG18081-RA | 1..231 | 17..247 | 1155 | 100 | Plus |
| CG15715-PA | 234 | CG15715-RA | 1..231 | 17..247 | 930 | 96.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18081-RC | 717 | CG18081-RC | 198..428 | 17..247 | 1155 | 100 | Plus |
| CG18081-RB | 886 | CG18081-RB | 86..316 | 17..247 | 1155 | 100 | Plus |
| CG18081-RA | 721 | CG18081-RA | 202..432 | 17..247 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15834734..15834877 | 160..17 | 720 | 100 | Minus |
| 3L | 28110227 | 3L | 15836780..15836923 | 160..17 | 705 | 99.3 | Minus |
| 3L | 28110227 | 3L | 15834365..15834453 | 247..159 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 15836162..15836250 | 247..159 | 325 | 91 | Minus |
Blast to na_te.dros performed 2015-02-06 12:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1443..1488 | 92..137 | 104 | 69.6 | Plus |
BO16065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:37 Download gff for
BO16065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-PA | 1..234 | 17..250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:12:55 Download gff for
BO16065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 196..432 | 9..247 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:54 Download gff for
BO16065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 196..432 | 9..247 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:54 Download gff for
BO16065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15834365..15834451 | 161..247 | 100 | <- | Minus |
| 3L | 15834734..15834883 | 9..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:12:55 Download gff for
BO16065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15827465..15827551 | 161..247 | 100 | <- | Minus |
| arm_3L | 15827834..15827983 | 9..160 | 97 | | Minus |
BO16065.complete Sequence
265 bp assembled on 2008-08-15
GenBank Submission: FJ633700
> BO16065.complete
GAAGTTATCAGTCGACATGGCACGTGGACACCAGAAGATCCAGTCGCAGG
CGAAGGCCTCCGAGAAGCAGGCCAAACTAAAGAAGCAACAAGGACACAGT
GCCAACGACCAGAAGAAGGCGGCCCAGAAGGCACTTGTCTATGTGTGCGC
CGTTTGCAAGTCGCAAATGCCCGATCCGAAGACTTACAAGCAGCATTTCG
AGAACAAGCATCCCAAGAATGACATGCCCGATGAGCTGAAGGAGGTCGCA
AGCTTTCTAGACCAT
BO16065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18081-RC | 234 | CG18081-PC | 1..231 | 17..247 | 1155 | 100 | Plus |
| CG18081-RB | 234 | CG18081-PB | 1..231 | 17..247 | 1155 | 100 | Plus |
| CG18081-RA | 234 | CG18081-PA | 1..231 | 17..247 | 1155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18081-RC | 717 | CG18081-RC | 198..428 | 17..247 | 1155 | 100 | Plus |
| CG18081-RB | 886 | CG18081-RB | 86..316 | 17..247 | 1155 | 100 | Plus |
| CG18081-RA | 721 | CG18081-RA | 202..432 | 17..247 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15834734..15834877 | 160..17 | 720 | 100 | Minus |
| 3L | 28110227 | 3L | 15836780..15836923 | 160..17 | 705 | 99.3 | Minus |
| 3L | 28110227 | 3L | 15834365..15834453 | 247..159 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 15836162..15836250 | 247..159 | 325 | 91 | Minus |
Blast to na_te.dros performed 2014-11-27 15:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1443..1488 | 92..137 | 104 | 69.6 | Plus |
BO16065.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:46 Download gff for
BO16065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 194..430 | 9..247 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:57 Download gff for
BO16065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 202..432 | 17..249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:03 Download gff for
BO16065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 200..430 | 17..249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:28 Download gff for
BO16065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 202..432 | 17..249 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:28 Download gff for
BO16065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15834362..15834451 | 161..249 | 97 | <- | Minus |
| 3L | 15834734..15834877 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:57 Download gff for
BO16065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15827462..15827551 | 161..249 | 97 | <- | Minus |
| arm_3L | 15827834..15827977 | 17..160 | 100 | | Minus |
BO16065.pep Sequence
Translation from 16 to 265
> BO16065.pep
MARGHQKIQSQAKASEKQAKLKKQQGHSANDQKKAAQKALVYVCAVCKSQ
MPDPKTYKQHFENKHPKNDMPDELKEVASFLDH
BO16065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18081-PC | 77 | CG18081-PC | 1..77 | 1..77 | 406 | 100 | Plus |
| CG18081-PB | 77 | CG18081-PB | 1..77 | 1..77 | 406 | 100 | Plus |
| CG18081-PA | 77 | CG18081-PA | 1..77 | 1..77 | 406 | 100 | Plus |
| CG15715-PB | 77 | CG15715-PB | 1..77 | 1..77 | 398 | 97.4 | Plus |
| CG15715-PA | 77 | CG15715-PA | 1..77 | 1..77 | 398 | 97.4 | Plus |
