Clone BO16066 Report

Search the DGRC for BO16066

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptAP-2sigma-RA
Protein status:BO16066.pep: Imported from assembly
Sequenced Size:460

Clone Sequence Records

BO16066.3prime Sequence

407 bp (293 high quality bases) assembled on 2006-06-16

> BO16066.3prime
ATGGTCTAGAAAGCTTGCCTCCAGCGAATTTAGCGTGAGCAGCTGCTTGA
GCACCTTCGTCTGCGAGGTCTCCCGGATCTCGCCCGCCAGGAACATCTCG
TCCACCACACTGTACACCTTGTAGAAGTTGAAGACCAGATCCAGCTCGCA
CACATTATGGAAGTATTCGTTGAGCACCTCCACGAAGTTGTGAATGGCCT
CCAGATAGCACAGGTTGTTGTCGTTTACGTCCACGCAGATGCAGAAGTAC
AGACCCGCATAGCGTCGGTAGACGATCTTGAAGTTGCGGAACTCCACAAA
GTTGGTGTGCTTGGCATCGCGCACTGTGACCACGGCATGCACCTCCTCAA
TCAGTTTCTGCTTCTCGTCGTCATCGAAGTTCATATACCACTTGGCCAGG
CGAGTTT

BO16066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6056-PA 429 AP-2sigma-RA 38..426 407..19 1945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-RA 751 CG6056-RA 160..548 407..19 1945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21269412..21269686 19..293 1375 100 Plus
3R 32079331 3R 21269745..21269860 292..407 580 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:38:26 has no hits.

BO16066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:38 Download gff for BO16066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6056-PA 38..429 18..407 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:37:11 Download gff for BO16066.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 160..552 13..407 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:07 Download gff for BO16066.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 160..552 13..407 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:07 Download gff for BO16066.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21269408..21269684 13..291 98 <- Plus
3R 21269745..21269860 292..407 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:37:11 Download gff for BO16066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095130..17095406 13..291 98 <- Plus
arm_3R 17095467..17095582 292..407 100   Plus

BO16066.5prime Sequence

458 bp (458 high quality bases) assembled on 2006-06-16

> BO16066.5prime
GAAGTTATCAGTCGACATGATACGATTCATACTTATACAAAACCGAGCTG
GAAAAACTCGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAG
CAGAAACTGATTGAGGAGGTGCATGCCGTGGTCACAGTGCGCGATGCCAA
GCACACCAACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCT
ATGCGGGTCTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTG
TGCTATCTGGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTT
CCATAATGTGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACA
GTGTGGTGGACGAGATGTTCCTGGCGGGCGAGATCCGGGAGACCTCGCAG
ACGAAGGTGCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGGCAAGCTT
TCTAGACC

BO16066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6056-PA 429 AP-2sigma-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 04:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-RA 751 CG6056-RA 123..548 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 04:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21269412..21269686 442..168 1375 100 Minus
3R 32079331 3R 21269745..21269895 169..19 755 100 Minus
Blast to na_te.dros performed on 2015-02-03 04:54:50 has no hits.

BO16066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:39 Download gff for BO16066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6056-PA 1..429 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:12:47 Download gff for BO16066.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..552 17..448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:25:46 Download gff for BO16066.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..552 17..448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:25:46 Download gff for BO16066.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21269408..21269684 170..448 98 <- Minus
3R 21269745..21269905 9..169 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:12:47 Download gff for BO16066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095130..17095406 170..448 98 <- Minus
arm_3R 17095467..17095627 9..169 97   Minus

BO16066.complete Sequence

460 bp assembled on 2008-08-15

GenBank Submission: FJ633701

> BO16066.complete
GAAGTTATCAGTCGACATGATACGATTCATACTTATACAAAACCGAGCTG
GAAAAACTCGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAG
CAGAAACTGATTGAGGAGGTGCATGCCGTGGTCACAGTGCGCGATGCCAA
GCACACCAACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCT
ATGCGGGTCTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTG
TGCTATCTGGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTT
CCATAATGTGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACA
GTGTGGTGGACGAGATGTTCCTGGCGGGCGAGATCCGGGAGACCTCGCAG
ACGAAGGTGCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGGCAAGCTT
TCTAGACCAT

BO16066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-RA 429 CG6056-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-RA 751 CG6056-RA 123..548 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21269412..21269686 442..168 1375 100 Minus
3R 32079331 3R 21269745..21269895 169..19 755 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:13:22 has no hits.

BO16066.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:55 Download gff for BO16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 125..554 17..448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:45 Download gff for BO16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..548 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:42 Download gff for BO16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 125..550 17..444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:37 Download gff for BO16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..548 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:37 Download gff for BO16066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21269408..21269684 170..444 99 <- Minus
3R 21269745..21269896 17..169 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:45 Download gff for BO16066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095130..17095406 170..444 99 <- Minus
arm_3R 17095467..17095618 17..169 99   Minus

BO16066.pep Sequence

Translation from 16 to 460

> BO16066.pep
MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFV
EFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCE
LDLVFNFYKVYSVVDEMFLAGEIRETSQTKVLKQLLTLNSLEASFLDH

BO16066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-PA 142 CG6056-PA 1..142 1..142 745 100 Plus
AP-1sigma-PD 152 CG5864-PD 1..142 1..142 366 46.5 Plus
AP-1sigma-PC 157 CG5864-PC 1..142 1..142 366 46.5 Plus
AP-1sigma-PB 157 CG5864-PB 1..142 1..142 366 46.5 Plus
AP-1sigma-PA 157 CG5864-PA 1..142 1..142 366 46.5 Plus