Clone Sequence Records
BO16066.3prime Sequence
407 bp (293 high quality bases) assembled on 2006-06-16
> BO16066.3prime
ATGGTCTAGAAAGCTTGCCTCCAGCGAATTTAGCGTGAGCAGCTGCTTGA
GCACCTTCGTCTGCGAGGTCTCCCGGATCTCGCCCGCCAGGAACATCTCG
TCCACCACACTGTACACCTTGTAGAAGTTGAAGACCAGATCCAGCTCGCA
CACATTATGGAAGTATTCGTTGAGCACCTCCACGAAGTTGTGAATGGCCT
CCAGATAGCACAGGTTGTTGTCGTTTACGTCCACGCAGATGCAGAAGTAC
AGACCCGCATAGCGTCGGTAGACGATCTTGAAGTTGCGGAACTCCACAAA
GTTGGTGTGCTTGGCATCGCGCACTGTGACCACGGCATGCACCTCCTCAA
TCAGTTTCTGCTTCTCGTCGTCATCGAAGTTCATATACCACTTGGCCAGG
CGAGTTT
BO16066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6056-PA | 429 | AP-2sigma-RA | 38..426 | 407..19 | 1945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-RA | 751 | CG6056-RA | 160..548 | 407..19 | 1945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21269412..21269686 | 19..293 | 1375 | 100 | Plus |
3R | 32079331 | 3R | 21269745..21269860 | 292..407 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:38:26 has no hits.
BO16066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:38 Download gff for
BO16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6056-PA | 38..429 | 18..407 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:37:11 Download gff for
BO16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 160..552 | 13..407 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:07 Download gff for
BO16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 160..552 | 13..407 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:07 Download gff for
BO16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21269408..21269684 | 13..291 | 98 | <- | Plus |
3R | 21269745..21269860 | 292..407 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:37:11 Download gff for
BO16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095130..17095406 | 13..291 | 98 | <- | Plus |
arm_3R | 17095467..17095582 | 292..407 | 100 | | Plus |
BO16066.5prime Sequence
458 bp (458 high quality bases) assembled on 2006-06-16
> BO16066.5prime
GAAGTTATCAGTCGACATGATACGATTCATACTTATACAAAACCGAGCTG
GAAAAACTCGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAG
CAGAAACTGATTGAGGAGGTGCATGCCGTGGTCACAGTGCGCGATGCCAA
GCACACCAACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCT
ATGCGGGTCTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTG
TGCTATCTGGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTT
CCATAATGTGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACA
GTGTGGTGGACGAGATGTTCCTGGCGGGCGAGATCCGGGAGACCTCGCAG
ACGAAGGTGCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGGCAAGCTT
TCTAGACC
BO16066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6056-PA | 429 | AP-2sigma-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 04:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-RA | 751 | CG6056-RA | 123..548 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 04:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21269412..21269686 | 442..168 | 1375 | 100 | Minus |
3R | 32079331 | 3R | 21269745..21269895 | 169..19 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 04:54:50 has no hits.
BO16066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:39 Download gff for
BO16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6056-PA | 1..429 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:12:47 Download gff for
BO16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..552 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:25:46 Download gff for
BO16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..552 | 17..448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:25:46 Download gff for
BO16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21269408..21269684 | 170..448 | 98 | <- | Minus |
3R | 21269745..21269905 | 9..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:12:47 Download gff for
BO16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095130..17095406 | 170..448 | 98 | <- | Minus |
arm_3R | 17095467..17095627 | 9..169 | 97 | | Minus |
BO16066.complete Sequence
460 bp assembled on 2008-08-15
GenBank Submission: FJ633701
> BO16066.complete
GAAGTTATCAGTCGACATGATACGATTCATACTTATACAAAACCGAGCTG
GAAAAACTCGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAG
CAGAAACTGATTGAGGAGGTGCATGCCGTGGTCACAGTGCGCGATGCCAA
GCACACCAACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCT
ATGCGGGTCTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTG
TGCTATCTGGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTT
CCATAATGTGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACA
GTGTGGTGGACGAGATGTTCCTGGCGGGCGAGATCCGGGAGACCTCGCAG
ACGAAGGTGCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGGCAAGCTT
TCTAGACCAT
BO16066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-RA | 429 | CG6056-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-RA | 751 | CG6056-RA | 123..548 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21269412..21269686 | 442..168 | 1375 | 100 | Minus |
3R | 32079331 | 3R | 21269745..21269895 | 169..19 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:13:22 has no hits.
BO16066.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:55 Download gff for
BO16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 125..554 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:45 Download gff for
BO16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..548 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:42 Download gff for
BO16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 125..550 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:37 Download gff for
BO16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..548 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:37 Download gff for
BO16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21269408..21269684 | 170..444 | 99 | <- | Minus |
3R | 21269745..21269896 | 17..169 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:45 Download gff for
BO16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095130..17095406 | 170..444 | 99 | <- | Minus |
arm_3R | 17095467..17095618 | 17..169 | 99 | | Minus |
BO16066.pep Sequence
Translation from 16 to 460
> BO16066.pep
MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFV
EFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCE
LDLVFNFYKVYSVVDEMFLAGEIRETSQTKVLKQLLTLNSLEASFLDH
BO16066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-PA | 142 | CG6056-PA | 1..142 | 1..142 | 745 | 100 | Plus |
AP-1sigma-PD | 152 | CG5864-PD | 1..142 | 1..142 | 366 | 46.5 | Plus |
AP-1sigma-PC | 157 | CG5864-PC | 1..142 | 1..142 | 366 | 46.5 | Plus |
AP-1sigma-PB | 157 | CG5864-PB | 1..142 | 1..142 | 366 | 46.5 | Plus |
AP-1sigma-PA | 157 | CG5864-PA | 1..142 | 1..142 | 366 | 46.5 | Plus |