Clone Sequence Records
BO16067.5prime Sequence
335 bp (335 high quality bases) assembled on 2006-06-16
> BO16067.5prime
GAAGTTATCAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGG
ATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTC
ATGCTTGTGGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGCGTA
CAAGTACCGGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGCAGC
TGCGAGTCGCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGACTG
GCCTACAGCATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGAAAA
CACAAAGTCATTGACTAACGCAAGCTTTCTAGACC
BO16067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-PA | 306 | CG17734-RA | 1..303 | 17..319 | 1515 | 100 | Plus |
| CG17734-PB | 288 | CG17734-RB | 1..284 | 17..300 | 1420 | 100 | Plus |
| CG11825-PA | 303 | CG11825-RA | 157..219 | 173..235 | 165 | 90.4 | Plus |
| CG11825-PA | 303 | CG11825-RA | 79..149 | 95..165 | 155 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 764 | CG17734-RA | 125..427 | 17..319 | 1515 | 100 | Plus |
| CG17734-RB | 1024 | CG17734-RB | 125..408 | 17..300 | 1420 | 100 | Plus |
| CG17734-RC | 1317 | CG17734-RC | 511..701 | 110..300 | 955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11242824..11243014 | 300..110 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 10420733..10421003 | 287..17 | 695 | 83.8 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:01:45 has no hits.
BO16067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:40 Download gff for
BO16067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-PA | 1..306 | 17..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:53 Download gff for
BO16067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 117..432 | 8..324 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:59 Download gff for
BO16067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 117..432 | 8..324 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:59 Download gff for
BO16067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11242540..11242563 | 301..324 | 91 | <- | Minus |
| 3R | 11242824..11243013 | 111..300 | 100 | <- | Minus |
| 3R | 11243782..11243883 | 8..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:53 Download gff for
BO16067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7068262..7068285 | 301..324 | 91 | <- | Minus |
| arm_3R | 7068546..7068735 | 111..300 | 100 | <- | Minus |
| arm_3R | 7069504..7069605 | 8..110 | 96 | | Minus |
BO16067.3prime Sequence
335 bp (335 high quality bases) assembled on 2006-06-16
> BO16067.3prime
ATGGTCTAGAAAGCTTGCGTTAGTCAATGACTTTGTGTTTTCCTTGGGCG
CCTTGTCGAACAGGTACTCCTTGGCCATGCTGTAGGCCAGTCCGAGGGTC
AGACATCCGACGACGGTTCCCTGGGCGGCGACTCGCAGCTGCATCAGGAA
GACGCTGGTGCTCATCGTTCCGCGGTTCCGGTACTTGTACGCTCCAATCA
ATCCGGCGGCCACGAATCCGGTAATACCCACAAGCATGAAGGGCGATTCC
TTTGCTTTCCTGGATAATTTGTTGGCCTGAGCGGCATCCTCCTCGCTGTC
GAAAAGGGACTTGGAACTCATGTCGACTGATAACT
BO16067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-PA | 306 | CG17734-RA | 1..303 | 321..19 | 1515 | 100 | Minus |
| CG17734-PB | 288 | CG17734-RB | 1..284 | 321..38 | 1420 | 100 | Minus |
| CG11825-PA | 303 | CG11825-RA | 157..219 | 165..103 | 165 | 90.4 | Minus |
| CG11825-PA | 303 | CG11825-RA | 79..149 | 243..173 | 155 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 764 | CG17734-RA | 125..427 | 321..19 | 1515 | 100 | Minus |
| CG17734-RB | 1024 | CG17734-RB | 125..408 | 321..38 | 1420 | 100 | Minus |
| CG17734-RC | 1317 | CG17734-RC | 511..701 | 228..38 | 955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11242824..11243014 | 38..228 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 10420733..10421003 | 51..321 | 695 | 83.8 | Plus |
| 3R | 32079331 | 3R | 11243780..11243875 | 226..321 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 06:37:59 has no hits.
BO16067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:40 Download gff for
BO16067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-PA | 1..306 | 15..321 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:11:46 Download gff for
BO16067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 117..432 | 14..330 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:43:22 Download gff for
BO16067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 117..432 | 14..330 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:43:22 Download gff for
BO16067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11242540..11242563 | 14..37 | 91 | <- | Plus |
| 3R | 11242824..11243013 | 38..227 | 100 | <- | Plus |
| 3R | 11243782..11243883 | 228..330 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:11:46 Download gff for
BO16067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7069504..7069605 | 228..330 | 96 | | Plus |
| arm_3R | 7068546..7068735 | 38..227 | 100 | <- | Plus |
| arm_3R | 7068262..7068285 | 14..37 | 91 | <- | Plus |
BO16067.complete Sequence
337 bp assembled on 2008-08-15
GenBank Submission: FJ633702
> BO16067.complete
GAAGTTATCAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGG
ATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTC
ATGCTTGTGGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGCGTA
CAAGTACCGGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGCAGC
TGCGAGTCGCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGACTG
GCCTACAGCATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGAAAA
CACAAAGTCATTGACTAACGCAAGCTTTCTAGACCAT
BO16067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 306 | CG17734-PA | 1..303 | 17..319 | 1515 | 100 | Plus |
| CG17734-RB | 288 | CG17734-PB | 1..284 | 17..300 | 1420 | 100 | Plus |
| CG11825-RC | 411 | CG11825-PC | 109..379 | 17..287 | 695 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 764 | CG17734-RA | 125..427 | 17..319 | 1515 | 100 | Plus |
| CG17734-RB | 1024 | CG17734-RB | 125..408 | 17..300 | 1420 | 100 | Plus |
| CG17734-RC | 1317 | CG17734-RC | 511..701 | 110..300 | 955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11242824..11243014 | 300..110 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 10420733..10421003 | 287..17 | 695 | 83.8 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:35:33 has no hits.
BO16067.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:40 Download gff for
BO16067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 94..409 | 8..324 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:27 Download gff for
BO16067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 125..427 | 17..321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:18 Download gff for
BO16067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 102..404 | 17..321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:24 Download gff for
BO16067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 125..427 | 17..321 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:24 Download gff for
BO16067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11242824..11243013 | 111..300 | 100 | <- | Minus |
| 3R | 11243782..11243875 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:27 Download gff for
BO16067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7068546..7068735 | 111..300 | 100 | <- | Minus |
| arm_3R | 7069504..7069597 | 17..110 | 100 | | Minus |
BO16067.pep Sequence
Translation from 16 to 337
> BO16067.pep
MSSKSLFDSEEDAAQANKLSRKAKESPFMLVGITGFVAAGLIGAYKYRNR
GTMSTSVFLMQLRVAAQGTVVGCLTLGLAYSMAKEYLFDKAPKENTKSLT
NASFLDH
BO16067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-PA | 101 | CG17734-PA | 1..101 | 1..101 | 500 | 100 | Plus |
| CG17734-PB | 95 | CG17734-PB | 1..94 | 1..94 | 465 | 100 | Plus |
| CG11825-PA | 100 | CG11825-PA | 1..97 | 1..97 | 411 | 83.5 | Plus |
| CG11825-PC | 136 | CG11825-PC | 37..133 | 1..97 | 411 | 83.5 | Plus |
| CG11825-PD | 72 | CG11825-PD | 1..69 | 29..97 | 299 | 85.5 | Plus |
