Clone BO16068 Report

Search the DGRC for BO16068

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptRpL32-RC
Protein status:BO16068.pep: Imported from assembly
Sequenced Size:476

Clone Sequence Records

BO16068.3prime Sequence

474 bp (336 high quality bases) assembled on 2006-06-16

> BO16068.3prime
ATGGTCTAGAAAGCTTTGCCTCGTTCTCTTGAGAACGCAGGCGACCGTTG
GGGTTGGTGAGGCGGACCGACAGCTGCTTGGCGCGCTCGACAATCTCCTT
GCGCTTCTTGGAGGAGACGCCGTGGGCGATCTCGCCGCAGTAAACGCGGT
TCTGCATGAGCAGGACCTCCAGCTCGCGCACGTTGTGCACCAGGAACTTC
TTGAATCCGGTGGGCAGCATGTGGCGGGTGCGCTTGTTCGATCCGTAACC
GATGTTGGGCATCAGATACTGTCCCTTGAAGCGGCGACGCACTCTGTTGT
CGATACCCTTGGGCTTGCGCCATTTGTGCGACAGCTTAGCATATCGATCC
GACTGGTGGCGGATGAAGTGCTTGGTGCGCTTCTTCACGATCTTGGGCCT
GTATGCTGGGCGGATGGTCATCTTGAAGCAGGTTGGGCTAACTTCTTGGG
CAGTATCCATGTCGACTGATAACT

BO16068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7939-PC 444 RpL32-RC 1..441 460..20 2180 99.7 Minus
CG7939-PB 405 RpL32-RB 1..402 421..20 2010 100 Minus
CG7939-PA 405 RpL32-RA 1..402 421..20 2010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-RC 747 CG7939-RC 220..660 460..20 2190 99.8 Minus
RpL32-RD 747 CG7939-RD 275..688 433..20 2055 99.8 Minus
RpL32-RB 524 CG7939-RB 28..437 429..20 2050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30045316..30045625 20..329 1550 100 Plus
3R 32079331 3R 30045687..30045787 329..429 505 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:27:00 has no hits.

BO16068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:41 Download gff for BO16068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7939-PC 1..444 16..460 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:00:50 Download gff for BO16068.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..667 11..465 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:23 Download gff for BO16068.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..667 11..465 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:23 Download gff for BO16068.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30045309..30045624 11..328 99 <- Plus
3R 30045687..30045786 329..428 100 <- Plus
3R 30045890..30045924 429..465 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:00:50 Download gff for BO16068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25871031..25871346 11..328 99 <- Plus
arm_3R 25871409..25871508 329..428 100 <- Plus
arm_3R 25871612..25871646 429..465 91   Plus

BO16068.5prime Sequence

474 bp (474 high quality bases) assembled on 2006-06-16

> BO16068.5prime
GAAGTTATCAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCT
TCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGC
ACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCA
CAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCA
AGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACC
CGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCG
CGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCG
CCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAG
CAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGA
GAACGAGGCAAAGCTTTCTAGACC

BO16068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7939-PC 444 RpL32-RC 1..441 17..457 2205 100 Plus
CG7939-PB 405 RpL32-RB 1..402 56..457 2010 100 Plus
CG7939-PA 405 RpL32-RA 1..402 56..457 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-RC 747 CG7939-RC 220..660 17..457 2205 100 Plus
RpL32-RD 747 CG7939-RD 275..688 44..457 2055 99.8 Plus
RpL32-RB 524 CG7939-RB 28..437 48..457 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30045316..30045625 457..148 1550 100 Minus
3R 32079331 3R 30045687..30045787 148..48 505 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:44:46 has no hits.

BO16068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:42 Download gff for BO16068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7939-PC 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:22:59 Download gff for BO16068.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..667 12..466 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:47 Download gff for BO16068.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..667 12..466 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:47 Download gff for BO16068.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30045309..30045624 149..466 99 <- Minus
3R 30045687..30045786 49..148 100 <- Minus
3R 30045890..30045924 12..48 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:22:59 Download gff for BO16068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25871031..25871346 149..466 99 <- Minus
arm_3R 25871409..25871508 49..148 100 <- Minus
arm_3R 25871612..25871646 12..48 94   Minus

BO16068.complete Sequence

476 bp assembled on 2008-08-15

> BO16068.complete
GAAGTTATCAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCT
TCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGC
ACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCA
CAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCA
AGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACC
CGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCG
CGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCG
CCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAG
CAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGA
GAACGAGGCAAAGCTTTCTAGACCAT

BO16068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-RC 444 CG7939-PC 1..441 17..457 2205 100 Plus
RpL32-RD 405 CG7939-PD 1..402 56..457 2010 100 Plus
RpL32-RA 405 CG7939-PA 1..402 56..457 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-RC 747 CG7939-RC 220..660 17..457 2205 100 Plus
RpL32-RD 747 CG7939-RD 275..688 44..457 2055 99.8 Plus
RpL32-RB 524 CG7939-RB 28..437 48..457 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30045316..30045625 457..148 1550 100 Minus
3R 32079331 3R 30045687..30045787 148..48 505 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:08:25 has no hits.

BO16068.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:07 Download gff for BO16068.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..667 12..466 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:34 Download gff for BO16068.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 220..660 17..459 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:44 Download gff for BO16068.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 220..660 17..459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:57 Download gff for BO16068.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 220..660 17..459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:57 Download gff for BO16068.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30045314..30045624 149..459 99 <- Minus
3R 30045687..30045786 49..148 100 <- Minus
3R 30045890..30045921 17..48 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:34 Download gff for BO16068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25871036..25871346 149..459 99 <- Minus
arm_3R 25871409..25871508 49..148 100 <- Minus
arm_3R 25871612..25871643 17..48 100   Minus

BO16068.pep Sequence

Translation from 16 to 475

> BO16068.pep
MDTAQEASPTCFKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKP
KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVL
LMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENEAKL
SRP

BO16068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-PC 147 CG7939-PC 1..147 1..147 775 100 Plus
RpL32-PD 134 CG7939-PD 1..134 14..147 705 100 Plus
RpL32-PA 134 CG7939-PA 1..134 14..147 705 100 Plus
RpL32-PB 134 CG7939-PB 1..134 14..147 705 100 Plus