Clone Sequence Records
BO16068.3prime Sequence
474 bp (336 high quality bases) assembled on 2006-06-16
> BO16068.3prime
ATGGTCTAGAAAGCTTTGCCTCGTTCTCTTGAGAACGCAGGCGACCGTTG
GGGTTGGTGAGGCGGACCGACAGCTGCTTGGCGCGCTCGACAATCTCCTT
GCGCTTCTTGGAGGAGACGCCGTGGGCGATCTCGCCGCAGTAAACGCGGT
TCTGCATGAGCAGGACCTCCAGCTCGCGCACGTTGTGCACCAGGAACTTC
TTGAATCCGGTGGGCAGCATGTGGCGGGTGCGCTTGTTCGATCCGTAACC
GATGTTGGGCATCAGATACTGTCCCTTGAAGCGGCGACGCACTCTGTTGT
CGATACCCTTGGGCTTGCGCCATTTGTGCGACAGCTTAGCATATCGATCC
GACTGGTGGCGGATGAAGTGCTTGGTGCGCTTCTTCACGATCTTGGGCCT
GTATGCTGGGCGGATGGTCATCTTGAAGCAGGTTGGGCTAACTTCTTGGG
CAGTATCCATGTCGACTGATAACT
BO16068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7939-PC | 444 | RpL32-RC | 1..441 | 460..20 | 2180 | 99.7 | Minus |
CG7939-PB | 405 | RpL32-RB | 1..402 | 421..20 | 2010 | 100 | Minus |
CG7939-PA | 405 | RpL32-RA | 1..402 | 421..20 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-RC | 747 | CG7939-RC | 220..660 | 460..20 | 2190 | 99.8 | Minus |
RpL32-RD | 747 | CG7939-RD | 275..688 | 433..20 | 2055 | 99.8 | Minus |
RpL32-RB | 524 | CG7939-RB | 28..437 | 429..20 | 2050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30045316..30045625 | 20..329 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 30045687..30045787 | 329..429 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:27:00 has no hits.
BO16068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:41 Download gff for
BO16068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7939-PC | 1..444 | 16..460 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:00:50 Download gff for
BO16068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..667 | 11..465 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:23 Download gff for
BO16068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..667 | 11..465 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:23 Download gff for
BO16068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30045309..30045624 | 11..328 | 99 | <- | Plus |
3R | 30045687..30045786 | 329..428 | 100 | <- | Plus |
3R | 30045890..30045924 | 429..465 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:00:50 Download gff for
BO16068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25871031..25871346 | 11..328 | 99 | <- | Plus |
arm_3R | 25871409..25871508 | 329..428 | 100 | <- | Plus |
arm_3R | 25871612..25871646 | 429..465 | 91 | | Plus |
BO16068.5prime Sequence
474 bp (474 high quality bases) assembled on 2006-06-16
> BO16068.5prime
GAAGTTATCAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCT
TCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGC
ACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCA
CAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCA
AGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACC
CGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCG
CGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCG
CCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAG
CAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGA
GAACGAGGCAAAGCTTTCTAGACC
BO16068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7939-PC | 444 | RpL32-RC | 1..441 | 17..457 | 2205 | 100 | Plus |
CG7939-PB | 405 | RpL32-RB | 1..402 | 56..457 | 2010 | 100 | Plus |
CG7939-PA | 405 | RpL32-RA | 1..402 | 56..457 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-RC | 747 | CG7939-RC | 220..660 | 17..457 | 2205 | 100 | Plus |
RpL32-RD | 747 | CG7939-RD | 275..688 | 44..457 | 2055 | 99.8 | Plus |
RpL32-RB | 524 | CG7939-RB | 28..437 | 48..457 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30045316..30045625 | 457..148 | 1550 | 100 | Minus |
3R | 32079331 | 3R | 30045687..30045787 | 148..48 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:44:46 has no hits.
BO16068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:42 Download gff for
BO16068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7939-PC | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:22:59 Download gff for
BO16068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..667 | 12..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:47 Download gff for
BO16068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..667 | 12..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:47 Download gff for
BO16068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30045309..30045624 | 149..466 | 99 | <- | Minus |
3R | 30045687..30045786 | 49..148 | 100 | <- | Minus |
3R | 30045890..30045924 | 12..48 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:22:59 Download gff for
BO16068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25871031..25871346 | 149..466 | 99 | <- | Minus |
arm_3R | 25871409..25871508 | 49..148 | 100 | <- | Minus |
arm_3R | 25871612..25871646 | 12..48 | 94 | | Minus |
BO16068.complete Sequence
476 bp assembled on 2008-08-15
> BO16068.complete
GAAGTTATCAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCT
TCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGC
ACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCA
CAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCA
AGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACC
CGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCG
CGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCG
CCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAG
CAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGA
GAACGAGGCAAAGCTTTCTAGACCAT
BO16068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-RC | 444 | CG7939-PC | 1..441 | 17..457 | 2205 | 100 | Plus |
RpL32-RD | 405 | CG7939-PD | 1..402 | 56..457 | 2010 | 100 | Plus |
RpL32-RA | 405 | CG7939-PA | 1..402 | 56..457 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-RC | 747 | CG7939-RC | 220..660 | 17..457 | 2205 | 100 | Plus |
RpL32-RD | 747 | CG7939-RD | 275..688 | 44..457 | 2055 | 99.8 | Plus |
RpL32-RB | 524 | CG7939-RB | 28..437 | 48..457 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30045316..30045625 | 457..148 | 1550 | 100 | Minus |
3R | 32079331 | 3R | 30045687..30045787 | 148..48 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:08:25 has no hits.
BO16068.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:07 Download gff for
BO16068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..667 | 12..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:34 Download gff for
BO16068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 220..660 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:44 Download gff for
BO16068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 220..660 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:57 Download gff for
BO16068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 220..660 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:57 Download gff for
BO16068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30045314..30045624 | 149..459 | 99 | <- | Minus |
3R | 30045687..30045786 | 49..148 | 100 | <- | Minus |
3R | 30045890..30045921 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:34 Download gff for
BO16068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25871036..25871346 | 149..459 | 99 | <- | Minus |
arm_3R | 25871409..25871508 | 49..148 | 100 | <- | Minus |
arm_3R | 25871612..25871643 | 17..48 | 100 | | Minus |
BO16068.pep Sequence
Translation from 16 to 475
> BO16068.pep
MDTAQEASPTCFKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKP
KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVL
LMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENEAKL
SRP
BO16068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-PC | 147 | CG7939-PC | 1..147 | 1..147 | 775 | 100 | Plus |
RpL32-PD | 134 | CG7939-PD | 1..134 | 14..147 | 705 | 100 | Plus |
RpL32-PA | 134 | CG7939-PA | 1..134 | 14..147 | 705 | 100 | Plus |
RpL32-PB | 134 | CG7939-PB | 1..134 | 14..147 | 705 | 100 | Plus |