Clone BO16069 Report

Search the DGRC for BO16069

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptRpL10Ab-RA
Protein status:BO16069.pep: Imported from assembly
Sequenced Size:685

Clone Sequence Records

BO16069.3prime Sequence

683 bp (683 high quality bases) assembled on 2006-06-16

> BO16069.3prime
ATGGTCTAGAAAGCTTGCGTAAAGACGCTGGGGCGGTCCCATGGAGGACT
TGACGTGCAGGGAGCGCACATTCTGCCAGTTCTTCTTCAACAGCGACACC
AAGAAGTTGATCGACAAGTTGACGTTTTGGGCCAGCTCGTCGGACTTCAT
GCCAACGTGGCCGACGGCGACGGACAGGCAGAGCACCTTCTTCATCTGGA
ACTTGATGGTCGACTTAACCTCCTCGATCTTGCCAATCATAGACTCCTGA
TGCGACAGCAGGGCAGGGAACTTGCCGGCCTTGTTCAAGCCAGGGCCAAG
CAAACGAGGAATCTGCTTGATCAGCGACTCAGAGGCCAGGAAGGCATCAT
AGGACTTGGCCAGCTTCTTCACCAGCTTCTTGTTCTTGTTCAGCTTCTTC
AGAGCCTCGGCATCCATGAAGTCGACGTTGTTGGCCTTGGCTTCGTCGCA
ATGCTGCTGATCGCCAAGGATGCACACCTTCATCTTGGGACGAGGAATGT
GCTTCAACTTGACGGTGCCGGAGAAACGCTTGTCCTTCTGGGGATCGTAG
TTCTTCAGGCCGATCTGCAGTTCCACCGTCTCGAGGAAGCCGCGCTTCTT
CTTCGCCGAAGCCTCCAGGAGTCCATTGACGCCCTCATACAGCGTATCAC
GCGAAACCTTCGACGCCATGTCGACTGATAACT

BO16069.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7283-PA 654 RpL10Ab-RA 1..651 669..19 3255 100 Minus
CG7283-PC 423 RpL10Ab-RC 46..420 393..19 1875 100 Minus
CG7283-PB 174 RpL10Ab-RB 1..163 669..507 815 100 Minus
CG7283-PC 423 RpL10Ab-RC 1..45 638..594 225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-RA 750 CG7283-RA 36..686 669..19 3255 100 Minus
RpL10Ab-RF 960 CG7283-RF 407..896 508..19 2450 100 Minus
RpL10Ab-RF 960 CG7283-RF 36..198 669..507 815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11823658..11824147 508..19 2450 100 Minus
3L 28110227 3L 11823200..11823357 664..507 790 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:40:18 has no hits.

BO16069.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:43 Download gff for BO16069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7283-PA 1..654 18..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:04 Download gff for BO16069.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 28..686 19..677 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:20 Download gff for BO16069.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 28..686 19..677 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:20 Download gff for BO16069.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11823197..11823355 509..670 98 -> Minus
3L 11823658..11824147 19..508 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:04 Download gff for BO16069.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11816297..11816455 509..670 98 -> Minus
arm_3L 11816758..11817247 19..508 100   Minus

BO16069.5prime Sequence

683 bp (683 high quality bases) assembled on 2006-06-16

> BO16069.5prime
GAAGTTATCAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATG
AGGGCGTCAATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTC
CTCGAGACGGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAA
GGACAAGCGTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCA
AGATGAAGGTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAG
GCCAACAACGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAA
GAACAAGAAGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGG
CCTCTGAGTCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTG
AACAAGGCCGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGAT
TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGG
TGCTCTGCCTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAG
CTGGCCCAAAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAA
GAAGAACTGGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGAC
CGCCCCAGCGTCTTTACGCAAGCTTTCTAGACC

BO16069.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7283-PA 654 RpL10Ab-RA 1..651 17..667 3255 100 Plus
CG7283-PC 423 RpL10Ab-RC 46..420 293..667 1875 100 Plus
CG7283-PB 174 RpL10Ab-RB 1..163 17..179 815 100 Plus
CG7283-PC 423 RpL10Ab-RC 1..45 48..92 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-RA 750 CG7283-RA 36..686 17..667 3255 100 Plus
RpL10Ab-RF 960 CG7283-RF 407..896 178..667 2450 100 Plus
RpL10Ab-RF 960 CG7283-RF 36..198 17..179 815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11823658..11824147 178..667 2450 100 Plus
3L 28110227 3L 11823200..11823357 22..179 790 100 Plus
Blast to na_te.dros performed on 2015-02-02 14:50:34 has no hits.

BO16069.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:44 Download gff for BO16069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7283-PA 1..654 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:55:32 Download gff for BO16069.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 28..686 9..667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:25:00 Download gff for BO16069.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 28..686 9..667 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:25:00 Download gff for BO16069.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11823197..11823355 16..177 98 -> Plus
3L 11823658..11824147 178..667 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:55:32 Download gff for BO16069.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11816297..11816455 16..177 98 -> Plus
arm_3L 11816758..11817247 178..667 100   Plus

BO16069.complete Sequence

685 bp assembled on 2008-08-15

GenBank Submission: KX798278

> BO16069.complete
GAAGTTATCAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATG
AGGGCGTCAATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTC
CTCGAGACGGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAA
GGACAAGCGTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCA
AGATGAAGGTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAG
GCCAACAACGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAA
GAACAAGAAGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGG
CCTCTGAGTCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTG
AACAAGGCCGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGAT
TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGG
TGCTCTGCCTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAG
CTGGCCCAAAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAA
GAAGAACTGGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGAC
CGCCCCAGCGTCTTTACGCAAGCTTTCTAGACCAT

BO16069.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-RA 654 CG7283-PA 1..651 17..667 3255 100 Plus
RpL10Ab-RF 174 CG7283-PF 1..163 17..179 815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-RA 750 CG7283-RA 36..686 17..667 3255 100 Plus
RpL10Ab-RF 960 CG7283-RF 407..896 178..667 2450 100 Plus
RpL10Ab-RF 960 CG7283-RF 36..198 17..179 815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11823658..11824147 178..667 2450 100 Plus
3L 28110227 3L 11823200..11823357 22..179 790 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:47:34 has no hits.

BO16069.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:31 Download gff for BO16069.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 27..685 9..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:31 Download gff for BO16069.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 36..686 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:55 Download gff for BO16069.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 35..685 17..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:45 Download gff for BO16069.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 36..686 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:45 Download gff for BO16069.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11823198..11823355 17..177 98 -> Plus
3L 11823658..11824147 178..669 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:31 Download gff for BO16069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11816298..11816455 17..177 98 -> Plus
arm_3L 11816758..11817247 178..669 99   Plus

BO16069.pep Sequence

Translation from 16 to 685

> BO16069.pep
MASKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFS
GTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLV
KKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEE
VKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQN
VRSLHVKSSMGPPQRLYASFLDH

BO16069.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-PA 217 CG7283-PA 1..217 1..217 1099 100 Plus
RpL10Aa-PA 216 CG3843-PA 1..216 1..217 676 63.6 Plus
RpL10Ab-PF 57 CG7283-PF 1..54 1..54 270 100 Plus