Clone Sequence Records
BO16069.3prime Sequence
683 bp (683 high quality bases) assembled on 2006-06-16
> BO16069.3prime
ATGGTCTAGAAAGCTTGCGTAAAGACGCTGGGGCGGTCCCATGGAGGACT
TGACGTGCAGGGAGCGCACATTCTGCCAGTTCTTCTTCAACAGCGACACC
AAGAAGTTGATCGACAAGTTGACGTTTTGGGCCAGCTCGTCGGACTTCAT
GCCAACGTGGCCGACGGCGACGGACAGGCAGAGCACCTTCTTCATCTGGA
ACTTGATGGTCGACTTAACCTCCTCGATCTTGCCAATCATAGACTCCTGA
TGCGACAGCAGGGCAGGGAACTTGCCGGCCTTGTTCAAGCCAGGGCCAAG
CAAACGAGGAATCTGCTTGATCAGCGACTCAGAGGCCAGGAAGGCATCAT
AGGACTTGGCCAGCTTCTTCACCAGCTTCTTGTTCTTGTTCAGCTTCTTC
AGAGCCTCGGCATCCATGAAGTCGACGTTGTTGGCCTTGGCTTCGTCGCA
ATGCTGCTGATCGCCAAGGATGCACACCTTCATCTTGGGACGAGGAATGT
GCTTCAACTTGACGGTGCCGGAGAAACGCTTGTCCTTCTGGGGATCGTAG
TTCTTCAGGCCGATCTGCAGTTCCACCGTCTCGAGGAAGCCGCGCTTCTT
CTTCGCCGAAGCCTCCAGGAGTCCATTGACGCCCTCATACAGCGTATCAC
GCGAAACCTTCGACGCCATGTCGACTGATAACT
BO16069.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7283-PA | 654 | RpL10Ab-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
CG7283-PC | 423 | RpL10Ab-RC | 46..420 | 393..19 | 1875 | 100 | Minus |
CG7283-PB | 174 | RpL10Ab-RB | 1..163 | 669..507 | 815 | 100 | Minus |
CG7283-PC | 423 | RpL10Ab-RC | 1..45 | 638..594 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-RA | 750 | CG7283-RA | 36..686 | 669..19 | 3255 | 100 | Minus |
RpL10Ab-RF | 960 | CG7283-RF | 407..896 | 508..19 | 2450 | 100 | Minus |
RpL10Ab-RF | 960 | CG7283-RF | 36..198 | 669..507 | 815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11823658..11824147 | 508..19 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 11823200..11823357 | 664..507 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:40:18 has no hits.
BO16069.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:43 Download gff for
BO16069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7283-PA | 1..654 | 18..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:04 Download gff for
BO16069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 28..686 | 19..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:20 Download gff for
BO16069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 28..686 | 19..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:20 Download gff for
BO16069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11823197..11823355 | 509..670 | 98 | -> | Minus |
3L | 11823658..11824147 | 19..508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:04 Download gff for
BO16069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11816297..11816455 | 509..670 | 98 | -> | Minus |
arm_3L | 11816758..11817247 | 19..508 | 100 | | Minus |
BO16069.5prime Sequence
683 bp (683 high quality bases) assembled on 2006-06-16
> BO16069.5prime
GAAGTTATCAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATG
AGGGCGTCAATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTC
CTCGAGACGGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAA
GGACAAGCGTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCA
AGATGAAGGTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAG
GCCAACAACGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAA
GAACAAGAAGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGG
CCTCTGAGTCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTG
AACAAGGCCGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGAT
TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGG
TGCTCTGCCTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAG
CTGGCCCAAAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAA
GAAGAACTGGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGAC
CGCCCCAGCGTCTTTACGCAAGCTTTCTAGACC
BO16069.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7283-PA | 654 | RpL10Ab-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
CG7283-PC | 423 | RpL10Ab-RC | 46..420 | 293..667 | 1875 | 100 | Plus |
CG7283-PB | 174 | RpL10Ab-RB | 1..163 | 17..179 | 815 | 100 | Plus |
CG7283-PC | 423 | RpL10Ab-RC | 1..45 | 48..92 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-RA | 750 | CG7283-RA | 36..686 | 17..667 | 3255 | 100 | Plus |
RpL10Ab-RF | 960 | CG7283-RF | 407..896 | 178..667 | 2450 | 100 | Plus |
RpL10Ab-RF | 960 | CG7283-RF | 36..198 | 17..179 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11823658..11824147 | 178..667 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 11823200..11823357 | 22..179 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 14:50:34 has no hits.
BO16069.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:44 Download gff for
BO16069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7283-PA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:55:32 Download gff for
BO16069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 28..686 | 9..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:25:00 Download gff for
BO16069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 28..686 | 9..667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:25:00 Download gff for
BO16069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11823197..11823355 | 16..177 | 98 | -> | Plus |
3L | 11823658..11824147 | 178..667 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:55:32 Download gff for
BO16069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11816297..11816455 | 16..177 | 98 | -> | Plus |
arm_3L | 11816758..11817247 | 178..667 | 100 | | Plus |
BO16069.complete Sequence
685 bp assembled on 2008-08-15
GenBank Submission: KX798278
> BO16069.complete
GAAGTTATCAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATG
AGGGCGTCAATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTC
CTCGAGACGGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAA
GGACAAGCGTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCA
AGATGAAGGTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAG
GCCAACAACGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAA
GAACAAGAAGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGG
CCTCTGAGTCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTG
AACAAGGCCGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGAT
TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGG
TGCTCTGCCTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAG
CTGGCCCAAAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAA
GAAGAACTGGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGAC
CGCCCCAGCGTCTTTACGCAAGCTTTCTAGACCAT
BO16069.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-RA | 654 | CG7283-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
RpL10Ab-RF | 174 | CG7283-PF | 1..163 | 17..179 | 815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-RA | 750 | CG7283-RA | 36..686 | 17..667 | 3255 | 100 | Plus |
RpL10Ab-RF | 960 | CG7283-RF | 407..896 | 178..667 | 2450 | 100 | Plus |
RpL10Ab-RF | 960 | CG7283-RF | 36..198 | 17..179 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11823658..11824147 | 178..667 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 11823200..11823357 | 22..179 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:47:34 has no hits.
BO16069.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:31 Download gff for
BO16069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 27..685 | 9..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:31 Download gff for
BO16069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 36..686 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:55 Download gff for
BO16069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 35..685 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:45 Download gff for
BO16069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 36..686 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:45 Download gff for
BO16069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11823198..11823355 | 17..177 | 98 | -> | Plus |
3L | 11823658..11824147 | 178..669 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:31 Download gff for
BO16069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11816298..11816455 | 17..177 | 98 | -> | Plus |
arm_3L | 11816758..11817247 | 178..669 | 99 | | Plus |
BO16069.pep Sequence
Translation from 16 to 685
> BO16069.pep
MASKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFS
GTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLV
KKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEE
VKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQN
VRSLHVKSSMGPPQRLYASFLDH
BO16069.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-PA | 217 | CG7283-PA | 1..217 | 1..217 | 1099 | 100 | Plus |
RpL10Aa-PA | 216 | CG3843-PA | 1..216 | 1..217 | 676 | 63.6 | Plus |
RpL10Ab-PF | 57 | CG7283-PF | 1..54 | 1..54 | 270 | 100 | Plus |