Clone Sequence Records
BO16070.3prime Sequence
464 bp (464 high quality bases) assembled on 2006-06-16
> BO16070.3prime
ATGGTCTAGAAAGCTTGCTGTCGAGATGAGCGAATAAACCATGCCGTATA
TGTAGTAGAAGAAGCTAATCAGATAGACGGCCAGTTTAATCCAACCCTCA
CGCATGTTCCGGTACAAAGTATCGGTTTTCAGGACCGTGGTGGGATCATA
AAGTCCGGGTCCCGACATCACAGGGCGGTTTTTGTAACGCCAAATATGAT
AGGCTATGAGGGGTATGTTGATGCATAGCGAAAACCATTCGCCGCAGAAC
AAGAAGAGCAAGTTCAGAAAGATGTGCAGAAGGTATTCGGGCAAAACCAG
CGGATTGAGGCTATTGCACTGATCAATTGGGTTCTTATAATCCGTTTTAA
GTTCGTCGAATGCAATGACATGAAATATGGCGAAAAATATCAAGAATGCA
TCCCCGATCAGGGCCACTATGTACGTGAAGGCGGTGAAGTTGAAGGCCAT
GTCGACTGATAACT
BO16070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5855-PA | 435 | cni-RA | 1..432 | 450..19 | 2160 | 100 | Minus |
CG5855-PB | 435 | cni-RB | 1..432 | 450..19 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-RC | 1132 | CG5855-RC | 87..518 | 450..19 | 2160 | 100 | Minus |
cni-RB | 878 | CG5855-RB | 137..568 | 450..19 | 2160 | 100 | Minus |
cni-RA | 811 | CG5855-RA | 70..501 | 450..19 | 2160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16310441..16310590 | 301..450 | 750 | 100 | Plus |
2L | 23513712 | 2L | 16310000..16310144 | 44..188 | 725 | 100 | Plus |
2L | 23513712 | 2L | 16310267..16310380 | 188..301 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:02:16 has no hits.
BO16070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:45 Download gff for
BO16070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5855-PB | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:57 Download gff for
BO16070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..511 | 12..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:14 Download gff for
BO16070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..511 | 12..450 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:14 Download gff for
BO16070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16309896..16309930 | 12..43 | 91 | <- | Plus |
2L | 16310000..16310143 | 44..187 | 100 | <- | Plus |
2L | 16310267..16310379 | 188..300 | 100 | <- | Plus |
2L | 16310441..16310590 | 301..450 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:57 Download gff for
BO16070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16309896..16309930 | 12..43 | 91 | <- | Plus |
arm_2L | 16310000..16310143 | 44..187 | 100 | <- | Plus |
arm_2L | 16310441..16310590 | 301..450 | 100 | | Plus |
arm_2L | 16310267..16310379 | 188..300 | 100 | <- | Plus |
BO16070.5prime Sequence
464 bp (464 high quality bases) assembled on 2006-06-16
> BO16070.5prime
GAAGTTATCAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAG
TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC
ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG
CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC
TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC
ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT
GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT
TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT
AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACAGC
AAGCTTTCTAGACC
BO16070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5855-PA | 435 | cni-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
CG5855-PB | 435 | cni-RB | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-RC | 1132 | CG5855-RC | 87..518 | 17..448 | 2160 | 100 | Plus |
cni-RB | 878 | CG5855-RB | 137..568 | 17..448 | 2160 | 100 | Plus |
cni-RA | 811 | CG5855-RA | 70..501 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16310441..16310590 | 166..17 | 750 | 100 | Minus |
2L | 23513712 | 2L | 16310000..16310144 | 423..279 | 725 | 100 | Minus |
2L | 23513712 | 2L | 16310267..16310380 | 279..166 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:28:08 has no hits.
BO16070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:45 Download gff for
BO16070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5855-PB | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:00:57 Download gff for
BO16070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..511 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:31 Download gff for
BO16070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..511 | 17..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:31 Download gff for
BO16070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16309896..16309930 | 424..455 | 91 | <- | Minus |
2L | 16310000..16310143 | 280..423 | 100 | <- | Minus |
2L | 16310267..16310379 | 167..279 | 100 | <- | Minus |
2L | 16310441..16310590 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:00:57 Download gff for
BO16070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16310267..16310379 | 167..279 | 100 | <- | Minus |
arm_2L | 16309896..16309930 | 424..455 | 91 | <- | Minus |
arm_2L | 16310000..16310143 | 280..423 | 100 | <- | Minus |
arm_2L | 16310441..16310590 | 17..166 | 100 | | Minus |
BO16070.complete Sequence
466 bp assembled on 2008-08-15
GenBank Submission: FJ633703
> BO16070.complete
GAAGTTATCAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAG
TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC
ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG
CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC
TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC
ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT
GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT
TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT
AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACAGC
AAGCTTTCTAGACCAT
BO16070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-RC | 435 | CG5855-PC | 1..432 | 17..448 | 2160 | 100 | Plus |
cni-RB | 435 | CG5855-PB | 1..432 | 17..448 | 2160 | 100 | Plus |
cni-RA | 435 | CG5855-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-RC | 1132 | CG5855-RC | 87..518 | 17..448 | 2160 | 100 | Plus |
cni-RB | 878 | CG5855-RB | 137..568 | 17..448 | 2160 | 100 | Plus |
cni-RA | 811 | CG5855-RA | 70..501 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16310441..16310590 | 166..17 | 750 | 100 | Minus |
2L | 23513712 | 2L | 16310000..16310144 | 423..279 | 725 | 100 | Minus |
2L | 23513712 | 2L | 16310267..16310380 | 279..166 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:46:07 has no hits.
BO16070.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:30 Download gff for
BO16070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RB | 93..534 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:17 Download gff for
BO16070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..501 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:19 Download gff for
BO16070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RB | 93..524 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:03 Download gff for
BO16070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..501 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:03 Download gff for
BO16070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16309904..16309930 | 424..450 | 92 | <- | Minus |
2L | 16310000..16310143 | 280..423 | 100 | <- | Minus |
2L | 16310267..16310379 | 167..279 | 100 | <- | Minus |
2L | 16310441..16310590 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:17 Download gff for
BO16070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16310441..16310590 | 17..166 | 100 | | Minus |
arm_2L | 16310000..16310143 | 280..423 | 100 | <- | Minus |
arm_2L | 16309904..16309930 | 424..450 | 92 | <- | Minus |
arm_2L | 16310267..16310379 | 167..279 | 100 | <- | Minus |
BO16070.pep Sequence
Translation from 16 to 466
> BO16070.pep
MAFNFTAFTYIVALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNP
LVLPEYLLHIFLNLLFLFCGEWFSLCINIPLIAYHIWRYKNRPVMSGPGL
YDPTTVLKTDTLYRNMREGWIKLAVYLISFFYYIYGMVYSLISTASFLDH
BO16070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-PC | 144 | CG5855-PC | 1..144 | 1..144 | 775 | 100 | Plus |
cni-PB | 144 | CG5855-PB | 1..144 | 1..144 | 775 | 100 | Plus |
cni-PA | 144 | CG5855-PA | 1..144 | 1..144 | 775 | 100 | Plus |
cnir-PA | 157 | CG17262-PA | 8..140 | 9..142 | 169 | 28.7 | Plus |