Clone BO16070 Report

Search the DGRC for BO16070

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptcni-RA
Protein status:BO16070.pep: Imported from assembly
Sequenced Size:466

Clone Sequence Records

BO16070.3prime Sequence

464 bp (464 high quality bases) assembled on 2006-06-16

> BO16070.3prime
ATGGTCTAGAAAGCTTGCTGTCGAGATGAGCGAATAAACCATGCCGTATA
TGTAGTAGAAGAAGCTAATCAGATAGACGGCCAGTTTAATCCAACCCTCA
CGCATGTTCCGGTACAAAGTATCGGTTTTCAGGACCGTGGTGGGATCATA
AAGTCCGGGTCCCGACATCACAGGGCGGTTTTTGTAACGCCAAATATGAT
AGGCTATGAGGGGTATGTTGATGCATAGCGAAAACCATTCGCCGCAGAAC
AAGAAGAGCAAGTTCAGAAAGATGTGCAGAAGGTATTCGGGCAAAACCAG
CGGATTGAGGCTATTGCACTGATCAATTGGGTTCTTATAATCCGTTTTAA
GTTCGTCGAATGCAATGACATGAAATATGGCGAAAAATATCAAGAATGCA
TCCCCGATCAGGGCCACTATGTACGTGAAGGCGGTGAAGTTGAAGGCCAT
GTCGACTGATAACT

BO16070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5855-PA 435 cni-RA 1..432 450..19 2160 100 Minus
CG5855-PB 435 cni-RB 1..432 450..19 2160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
cni-RC 1132 CG5855-RC 87..518 450..19 2160 100 Minus
cni-RB 878 CG5855-RB 137..568 450..19 2160 100 Minus
cni-RA 811 CG5855-RA 70..501 450..19 2160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16310441..16310590 301..450 750 100 Plus
2L 23513712 2L 16310000..16310144 44..188 725 100 Plus
2L 23513712 2L 16310267..16310380 188..301 570 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:02:16 has no hits.

BO16070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:45 Download gff for BO16070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5855-PB 1..435 18..450 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:57 Download gff for BO16070.3prime
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..511 12..450 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:14 Download gff for BO16070.3prime
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..511 12..450 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:14 Download gff for BO16070.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16309896..16309930 12..43 91 <- Plus
2L 16310000..16310143 44..187 100 <- Plus
2L 16310267..16310379 188..300 100 <- Plus
2L 16310441..16310590 301..450 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:57 Download gff for BO16070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16309896..16309930 12..43 91 <- Plus
arm_2L 16310000..16310143 44..187 100 <- Plus
arm_2L 16310441..16310590 301..450 100   Plus
arm_2L 16310267..16310379 188..300 100 <- Plus

BO16070.5prime Sequence

464 bp (464 high quality bases) assembled on 2006-06-16

> BO16070.5prime
GAAGTTATCAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAG
TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC
ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG
CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC
TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC
ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT
GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT
TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT
AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACAGC
AAGCTTTCTAGACC

BO16070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5855-PA 435 cni-RA 1..432 17..448 2160 100 Plus
CG5855-PB 435 cni-RB 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
cni-RC 1132 CG5855-RC 87..518 17..448 2160 100 Plus
cni-RB 878 CG5855-RB 137..568 17..448 2160 100 Plus
cni-RA 811 CG5855-RA 70..501 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16310441..16310590 166..17 750 100 Minus
2L 23513712 2L 16310000..16310144 423..279 725 100 Minus
2L 23513712 2L 16310267..16310380 279..166 570 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:28:08 has no hits.

BO16070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:45 Download gff for BO16070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5855-PB 1..435 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:00:57 Download gff for BO16070.5prime
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..511 17..455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:31 Download gff for BO16070.5prime
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..511 17..455 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:31 Download gff for BO16070.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16309896..16309930 424..455 91 <- Minus
2L 16310000..16310143 280..423 100 <- Minus
2L 16310267..16310379 167..279 100 <- Minus
2L 16310441..16310590 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:00:57 Download gff for BO16070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16310267..16310379 167..279 100 <- Minus
arm_2L 16309896..16309930 424..455 91 <- Minus
arm_2L 16310000..16310143 280..423 100 <- Minus
arm_2L 16310441..16310590 17..166 100   Minus

BO16070.complete Sequence

466 bp assembled on 2008-08-15

GenBank Submission: FJ633703

> BO16070.complete
GAAGTTATCAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAG
TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC
ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG
CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC
TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC
ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT
GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT
TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT
AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACAGC
AAGCTTTCTAGACCAT

BO16070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
cni-RC 435 CG5855-PC 1..432 17..448 2160 100 Plus
cni-RB 435 CG5855-PB 1..432 17..448 2160 100 Plus
cni-RA 435 CG5855-PA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
cni-RC 1132 CG5855-RC 87..518 17..448 2160 100 Plus
cni-RB 878 CG5855-RB 137..568 17..448 2160 100 Plus
cni-RA 811 CG5855-RA 70..501 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16310441..16310590 166..17 750 100 Minus
2L 23513712 2L 16310000..16310144 423..279 725 100 Minus
2L 23513712 2L 16310267..16310380 279..166 570 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:46:07 has no hits.

BO16070.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:30 Download gff for BO16070.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RB 93..534 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:17 Download gff for BO16070.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..501 17..450 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:19 Download gff for BO16070.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RB 93..524 17..450 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:03 Download gff for BO16070.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..501 17..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:03 Download gff for BO16070.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16309904..16309930 424..450 92 <- Minus
2L 16310000..16310143 280..423 100 <- Minus
2L 16310267..16310379 167..279 100 <- Minus
2L 16310441..16310590 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:17 Download gff for BO16070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16310441..16310590 17..166 100   Minus
arm_2L 16310000..16310143 280..423 100 <- Minus
arm_2L 16309904..16309930 424..450 92 <- Minus
arm_2L 16310267..16310379 167..279 100 <- Minus

BO16070.pep Sequence

Translation from 16 to 466

> BO16070.pep
MAFNFTAFTYIVALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNP
LVLPEYLLHIFLNLLFLFCGEWFSLCINIPLIAYHIWRYKNRPVMSGPGL
YDPTTVLKTDTLYRNMREGWIKLAVYLISFFYYIYGMVYSLISTASFLDH

BO16070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
cni-PC 144 CG5855-PC 1..144 1..144 775 100 Plus
cni-PB 144 CG5855-PB 1..144 1..144 775 100 Plus
cni-PA 144 CG5855-PA 1..144 1..144 775 100 Plus
cnir-PA 157 CG17262-PA 8..140 9..142 169 28.7 Plus