Clone Sequence Records
BO16071.3prime Sequence
602 bp (524 high quality bases) assembled on 2006-06-16
> BO16071.3prime
ATGGTCTAGAAAGCTTGCGCAGAGTCCTCCAGCCAAGCCAAGTGGTGGTG
GTGGTGCACCGAATCCCAGTCCAAAGCCGCCGCCAGCGCCATAGCCAGCG
CCATAGCCGTAGGAGGCGGGAAGGGCAGCACCACCGCCGAAGGAGCTTCC
ATAGCCACCCAATCCTCCGCCCAAAGCGCCTCCGAATCCGCCAACATAGC
CGGCTCCACCGGCCAGGACAGGAGTGGCAACCGGGGTGGACACCGATGTG
ACCACCGGTGTAACCACGGCGGAGGTGGATATGGCAGGCGCAGCGCCCAC
AAAGCCGCTGGAATAGCCACCGCCATAGCCGCCAGTGTAACCGCCGCCAT
ATCCTCCACCATAGCTTCCGCCATATCCTCCTCCGATTCCACCTCCTGGC
ACCACCGATACCTTGATCACCTTCACCACGTTCTCGGGAGCGTATCCATA
GCCGGCGCCATATCCTGATCCATAGCCAGATCCATAGCCGTAGCCAGAAC
CATAGCCGCCGCCATATCCAGATCCATAGCCAGACGTAGTGGCTCCGCCC
AGAAAAAGATTAAGCTTGCCAAAGGTGGTTTCTCCCGGCTTCGCTAGGGA
AA
BO16071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-PA | 630 | CG5070-RA | 44..627 | 602..19 | 2870 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-RA | 814 | CG5070-RA | 127..710 | 602..19 | 2890 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17203238..17203821 | 602..19 | 2890 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:38:45 has no hits.
BO16071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:46 Download gff for
BO16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-PA | 47..630 | 18..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:40:54 Download gff for
BO16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 130..710 | 19..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:55 Download gff for
BO16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 130..710 | 19..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:55 Download gff for
BO16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17203241..17203821 | 19..599 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:40:54 Download gff for
BO16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17097274..17097854 | 19..599 | 99 | | Minus |
BO16071.5prime Sequence
659 bp (659 high quality bases) assembled on 2006-06-16
> BO16071.5prime
GAAGTTATCAGTCGACATGAAGTTCTACCTGGGATTGGCGGCAGTAGTAG
TTGCGATGGTTTCCCTAGCGAAGCCGGGAGAAGCCACCTTTGGCAAGCTT
AATCTTCTTCTGGGCGGAGCCACTACGTCTGGCTATGGATCTGGATATGG
CGGCGGCTATGGTTCTGGCTACGGCTATGGATCTGGCTATGGATCAGGAT
ATGGCGCCGGCTATGGATACGCTCCCGAGAACGTGGTGAAGGTGATCAAG
GTATCGGTGGTGCCAGGAGGTGGAATCGGAGGAGGATATGGCGGAAGCTA
TGGTGGAGGATATGGCGGCGGTTACACTGGCGGCTATGGCGGTGGCTATT
CCAGCGGCTTTGTGGGCGCTGCGCCTGCCATATCCACCTCCGCCGTGGTT
ACACCGGTGGTCACATCGGTGTCCACCCCGGTTGCCACTCCTGTCCTGGC
CGGTGGAGCCGGCTATGTTGGCGGATTCGGAGGCGCTTTGGGCGGAGGAT
TGGGTGGCTATGGAAGCTCCTTCGGCGGTGGTGCTGCCCTTCCCGCCTCC
TACGGCTATGGCGCTGGCTATGGCGCTGGCGGCGGCTTTGGACTGGGATT
CGGTGCACCACCACCACCACTTGGCTTGGCTGGAGGACTCTGCGCAAGCT
TTCTAGACC
BO16071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-PA | 630 | CG5070-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-RA | 814 | CG5070-RA | 83..710 | 16..643 | 3140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17203194..17203821 | 16..643 | 3140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:06:20 has no hits.
BO16071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:47 Download gff for
BO16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-PA | 1..630 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:18:17 Download gff for
BO16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 74..710 | 5..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:02 Download gff for
BO16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 74..710 | 5..643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:02 Download gff for
BO16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17203185..17203821 | 5..643 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:18:17 Download gff for
BO16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17097218..17097854 | 5..643 | 99 | | Plus |
BO16071.complete Sequence
661 bp assembled on 2008-08-15
GenBank Submission: FJ633704
> BO16071.complete
GAAGTTATCAGTCGACATGAAGTTCTACCTGGGATTGGCGGCAGTAGTAG
TTGCGATGGTTTCCCTAGCGAAGCCGGGAGAAGCCACCTTTGGCAAGCTT
AATCTTCTTCTGGGCGGAGCCACTACGTCTGGCTATGGATCTGGATATGG
CGGCGGCTATGGTTCTGGCTACGGCTATGGATCTGGCTATGGATCAGGAT
ATGGCGCCGGCTATGGATACGCTCCCGAGAACGTGGTGAAGGTGATCAAG
GTATCGGTGGTGCCAGGAGGTGGAATCGGAGGAGGATATGGCGGAAGCTA
TGGTGGAGGATATGGCGGCGGTTACACTGGCGGCTATGGCGGTGGCTATT
CCAGCGGCTTTGTGGGCGCTGCGCCTGCCATATCCACCTCCGCCGTGGTT
ACACCGGTGGTCACATCGGTGTCCACCCCGGTTGCCACTCCTGTCCTGGC
CGGTGGAGCCGGCTATGTTGGCGGATTCGGAGGCGCTTTGGGCGGAGGAT
TGGGTGGCTATGGAAGCTCCTTCGGCGGTGGTGCTGCCCTTCCCGCCTCC
TACGGCTATGGCGCTGGCTATGGCGCTGGCGGCGGCTTTGGACTGGGATT
CGGTGCACCACCACCACCACTTGGCTTGGCTGGAGGACTCTGCGCAAGCT
TTCTAGACCAT
BO16071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-RA | 630 | CG5070-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-RA | 814 | CG5070-RA | 83..710 | 16..643 | 3140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17203194..17203821 | 16..643 | 3140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:05 has no hits.
BO16071.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:29 Download gff for
BO16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 72..711 | 5..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:04 Download gff for
BO16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 84..710 | 17..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:06 Download gff for
BO16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 82..708 | 17..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:03 Download gff for
BO16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 84..710 | 17..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:03 Download gff for
BO16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17203195..17203821 | 17..645 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:04 Download gff for
BO16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17097228..17097854 | 17..645 | 99 | | Plus |
BO16071.pep Sequence
Translation from 16 to 661
> BO16071.pep
MKFYLGLAAVVVAMVSLAKPGEATFGKLNLLLGGATTSGYGSGYGGGYGS
GYGYGSGYGSGYGAGYGYAPENVVKVIKVSVVPGGGIGGGYGGSYGGGYG
GGYTGGYGGGYSSGFVGAAPAISTSAVVTPVVTSVSTPVATPVLAGGAGY
VGGFGGALGGGLGGYGSSFGGGAALPASYGYGAGYGAGGGFGLGFGAPPP
PLGLAGGLCASFLDH
BO16071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-PA | 209 | CG5070-PA | 1..209 | 1..209 | 1118 | 100 | Plus |
| CG15597-PB | 149 | CG15597-PB | 1..138 | 1..172 | 304 | 44.2 | Plus |
| CG14191-PA | 193 | CG14191-PA | 7..189 | 11..205 | 285 | 36.9 | Plus |
| CG17108-PA | 342 | CG17108-PA | 154..307 | 33..207 | 245 | 38.3 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 27..127 | 41..190 | 239 | 39.7 | Plus |
| CG15597-PB | 149 | CG15597-PB | 22..132 | 79..196 | 224 | 42.6 | Plus |
| CG15597-PB | 149 | CG15597-PB | 55..141 | 21..109 | 220 | 51.6 | Plus |
| CG17108-PA | 342 | CG17108-PA | 42..195 | 34..211 | 214 | 35.7 | Plus |
| CG17108-PA | 342 | CG17108-PA | 67..246 | 17..207 | 213 | 35.1 | Plus |
| CG17108-PA | 342 | CG17108-PA | 1..208 | 1..207 | 202 | 33.5 | Plus |
| CG17108-PA | 342 | CG17108-PA | 213..340 | 33..185 | 188 | 37.1 | Plus |
| CG14191-PA | 193 | CG14191-PA | 90..193 | 33..115 | 152 | 38.5 | Plus |
| CG17108-PA | 342 | CG17108-PA | 232..332 | 20..126 | 148 | 40.3 | Plus |
