Clone BO16074 Report

Search the DGRC for BO16074

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptepsilonTry-RA
Protein status:BO16074.pep: Imported from assembly
Sequenced Size:802

Clone Sequence Records

BO16074.3prime Sequence

763 bp (684 high quality bases) assembled on 2006-06-16

> BO16074.3prime
ATGGTCTAGAAAGCTTGCCACCTCCTCGGCGGTCCTCTCGATCCACTCGT
GGAAGTGGGCAACGTCGGCGTAGACACCGGGATACCTCACATCACCGCAT
CCATAGCCCCAGGACACAACACCGACAAGGCGGTCTCCGGAGACAAGTGG
GCCACCGGAGTCACCCTGGCAGGCATCCTTGTGTGGGGCGTAGGCGCAGA
GCATGGTGTCCTTGATCTTCTTTCCGTATCCGAACTCATCCGAGCGGCAA
CGCGACACATCGATGATCTCCAGATCAACGGCCAGCAGATGATCGGGAAT
GGTGCTGCCACCGGACTCGGTGGTGCCCCAGCCGGAAACCACGGCGGTGG
CGCCCTCACGAGGGTTGGAGTCGGCAATACGGATCTCGCGAATGCTGGAG
CGGAAGCTCAGATCGGACTCGATGCGAATAATAGCAATGTCGTTGACCAT
GGTGCGGGAGTTGTAGCCCTCGTGGTTGCGGAAGGAGCGAACGGAGTGGA
CACTGCCGCCGGAGCGCCAGTAGGTGCTGCCCACACGAATCTTCAGGTCC
TTGGCCTCAATCGACTGCAGGCAGTGAGCGGCGGTGATCACAATGTCGTG
GGAGTAGATGGATCCACCGCAGAAGTGTGATCCATAGCGCTGCAAGGACA
CCTGGTAGGGATGGGCGTCGATGCTGGTCTCATAACCACCGACGATACGA
CCCATCCAACTGGGGCAGCAGGCCATCGGGAATGGTGGCAGCCAAGGCGC
AGGCCCAAACGGA

BO16074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18681-PA 771 epsilonTry-RA 25..768 763..19 3635 99.5 Minus
CG12351-PA 762 deltaTry-RA 606..650 181..137 200 97.7 Minus
CG30031-PA 762 CG30031-RA 606..650 181..137 200 97.7 Minus
CG30025-PA 762 CG30025-RA 606..650 181..137 200 97.7 Minus
CG30028-PA 762 gammaTry-RA 606..650 181..137 200 97.7 Minus
CG18444-PA 771 alphaTry-RA 606..650 181..137 200 97.7 Minus
CG18211-PA 762 betaTry-RA 616..650 171..137 150 97.1 Minus
CG12351-PA 762 deltaTry-RA 310..353 477..434 145 93.1 Minus
CG30031-PA 762 CG30031-RA 310..353 477..434 145 93.1 Minus
CG30025-PA 762 CG30025-RA 310..353 477..434 145 93.1 Minus
CG30028-PA 762 gammaTry-RA 310..353 477..434 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-RA 830 CG18681-RA 44..787 763..19 3670 99.6 Minus
gammaTry-RA 810 CG30028-RA 49..368 754..434 305 74.5 Minus
deltaTry-RA 810 CG12351-RA 48..367 754..434 305 74.5 Minus
gammaTry-RA 810 CG30028-RA 621..743 181..59 300 82.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11345280..11346023 19..763 3645 99.6 Plus
2R 25286936 2R 11344365..11344487 59..181 300 82.9 Plus
2R 25286936 2R 11349128..11349250 59..181 300 82.9 Plus
2R 25286936 2R 11351432..11351554 181..59 300 82.9 Minus
2R 25286936 2R 11353632..11353754 59..181 300 82.9 Plus
2R 25286936 2R 11355938..11356060 181..59 300 82.9 Minus
2R 25286936 2R 11346900..11347069 228..59 280 77.6 Minus
2R 25286936 2R 11349503..11349822 434..754 265 72.9 Plus
2R 25286936 2R 11350860..11351179 754..434 265 72.9 Minus
2R 25286936 2R 11354007..11354326 434..754 265 72.9 Plus
2R 25286936 2R 11355366..11355685 754..434 265 72.9 Minus
Blast to na_te.dros performed on 2015-02-10 16:47:18 has no hits.

BO16074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:49 Download gff for BO16074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18681-PA 26..771 15..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:38 Download gff for BO16074.3prime
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 45..793 13..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:19 Download gff for BO16074.3prime
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 45..793 13..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:19 Download gff for BO16074.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11345274..11346022 13..762 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:38 Download gff for BO16074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7232779..7233527 13..762 99   Plus

BO16074.5prime Sequence

780 bp (744 high quality bases) assembled on 2006-06-16

> BO16074.5prime
GAAGTTATCAGTCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGG
CCTGCGCCTTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGAT
GGTCGTATCGTCGGTGGTTATGAGACCAGCATCGACGCCCATCCCTACCA
GGTGTCCTTGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACT
CCCACGACATTGTGATCACCGCCGCTCACTGCCTGCAGTCGATTGAGGCC
AAGGACCTGAAGATTCGTGTGGGCAGCACCTACTGGCGCTCCGGCGGCAG
TGTCCACTCCGTTCGCTCCTTCCGCAACCACGAGGGCTACAACTCCCGCA
CCATGGTCAACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTC
CGCTCCAGCATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGG
CGCCACCGCCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCAGCA
CCATTCCCGATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCG
CGTTGCCGCTCGGATGAGTTCGGATACGGAAAGAAGATCAAGGACACCAT
GCTCTGCGCCTACGCCCCACACAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTTGTCTCCGGAGACCGCCTTGTCGGTGTTGTGTCCTGNGGCTAT
GGATGCGGTGATGTGAGGTATCCCGGTGTCTACGCCGACGTTGCCCACTT
CCACGAGTGGATCGAGAGGACCGCCGAGGG

BO16074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18681-PA 771 epsilonTry-RA 1..763 17..779 3796 99.8 Plus
CG12351-PA 762 deltaTry-RA 606..650 622..666 200 97.7 Plus
CG30031-PA 762 CG30031-RA 606..650 622..666 200 97.7 Plus
CG30025-PA 762 CG30025-RA 606..650 622..666 200 97.7 Plus
CG30028-PA 762 gammaTry-RA 606..650 622..666 200 97.7 Plus
CG18444-PA 771 alphaTry-RA 606..650 622..666 200 97.7 Plus
CG18211-PA 762 betaTry-RA 616..650 632..666 150 97.1 Plus
CG12351-PA 762 deltaTry-RA 310..353 326..369 145 93.1 Plus
CG30031-PA 762 CG30031-RA 310..353 326..369 145 93.1 Plus
CG30025-PA 762 CG30025-RA 310..353 326..369 145 93.1 Plus
CG30028-PA 762 gammaTry-RA 310..353 326..369 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-RA 830 CG18681-RA 20..782 17..779 3804 99.9 Plus
gammaTry-RA 810 CG30028-RA 49..368 50..369 340 75.1 Plus
deltaTry-RA 810 CG12351-RA 48..367 50..369 340 75.1 Plus
gammaTry-RA 810 CG30028-RA 621..743 622..744 289 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11345285..11346047 779..17 3804 99.9 Minus
2R 25286936 2R 11349503..11349822 369..50 325 73.4 Minus
2R 25286936 2R 11350860..11351179 50..369 325 73.4 Plus
2R 25286936 2R 11354007..11354326 369..50 325 73.4 Minus
2R 25286936 2R 11355366..11355685 50..369 325 73.4 Plus
2R 25286936 2R 11344365..11344487 744..622 289 82.1 Minus
2R 25286936 2R 11349128..11349250 744..622 289 82.1 Minus
2R 25286936 2R 11351432..11351554 622..744 289 82.1 Plus
2R 25286936 2R 11353632..11353754 744..622 289 82.1 Minus
2R 25286936 2R 11355938..11356060 622..744 289 82.1 Plus
2R 25286936 2R 11346375..11346695 50..370 285 72.6 Plus
2R 25286936 2R 11346900..11347069 575..744 269 77.1 Plus
2R 25286936 2R 11344739..11345061 370..48 250 71.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:24:22 has no hits.

BO16074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:50 Download gff for BO16074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18681-PA 1..763 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:47:55 Download gff for BO16074.5prime
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 20..782 17..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:15 Download gff for BO16074.5prime
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 20..782 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:15 Download gff for BO16074.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11345283..11346047 17..780 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:47:55 Download gff for BO16074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7232788..7233552 17..780 99   Minus

BO16074.complete Sequence

802 bp assembled on 2008-08-15

GenBank Submission: FJ633705

> BO16074.complete
GAAGTTATCAGTCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGG
CCTGCGCCTTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGAT
GGTCGTATCGTCGGTGGTTATGAGACCAGCATCGACGCCCATCCCTACCA
GGTGTCCTTGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACT
CCCACGACATTGTGATCACCGCCGCTCACTGCCTGCAGTCGATTGAGGCC
AAGGACCTGAAGATTCGTGTGGGCAGCACCTACTGGCGCTCCGGCGGCAG
TGTCCACTCCGTTCGCTCCTTCCGCAACCACGAGGGCTACAACTCCCGCA
CCATGGTCAACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTC
CGCTCCAGCATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGG
CGCCACCGCCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCAGCA
CCATTCCCGATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCG
CGTTGCCGCTCGGATGAGTTCGGATACGGAAAGAAGATCAAGGACACCAT
GCTCTGCGCCTACGCCCCACACAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTTGTCTCCGGAGACCGCCTTGTCGGTGTTGTGTCCTGGGGCTAT
GGATGCGGTGATGTGAGGTATCCCGGTGTCTACGCCGACGTTGCCCACTT
CCACGAGTGGATCGAGAGGACCGCCGAGGAGGTGGCAAGCTTTCTAGACC
AT

BO16074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-RA 771 CG18681-PA 1..768 17..784 3840 100 Plus
gammaTry-RA 762 CG30028-PA 34..353 50..369 325 73.4 Plus
deltaTry-RA 762 CG12351-PA 34..353 50..369 325 73.4 Plus
gammaTry-RA 762 CG30028-PA 606..728 622..744 300 82.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-RA 830 CG18681-RA 20..787 17..784 3840 100 Plus
gammaTry-RA 810 CG30028-RA 49..368 50..369 325 73.4 Plus
deltaTry-RA 810 CG12351-RA 48..367 50..369 325 73.4 Plus
gammaTry-RA 810 CG30028-RA 621..743 622..744 300 82.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11345280..11346047 784..17 3840 100 Minus
2R 25286936 2R 11349503..11349822 369..50 325 73.4 Minus
2R 25286936 2R 11350860..11351179 50..369 325 73.4 Plus
2R 25286936 2R 11354007..11354326 369..50 325 73.4 Minus
2R 25286936 2R 11355366..11355685 50..369 325 73.4 Plus
2R 25286936 2R 11344365..11344487 744..622 300 82.9 Minus
2R 25286936 2R 11349128..11349250 744..622 300 82.9 Minus
2R 25286936 2R 11351432..11351554 622..744 300 82.9 Plus
2R 25286936 2R 11353632..11353754 744..622 300 82.9 Minus
2R 25286936 2R 11355938..11356060 622..744 300 82.9 Plus
2R 25286936 2R 11346375..11346695 50..370 285 72.6 Plus
2R 25286936 2R 11346900..11347069 575..744 280 77.6 Plus
2R 25286936 2R 11344739..11345061 370..48 250 71.8 Minus
Blast to na_te.dros performed on 2014-11-28 01:01:54 has no hits.

BO16074.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:18 Download gff for BO16074.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 16..789 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:01 Download gff for BO16074.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 25..787 22..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:18 Download gff for BO16074.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 21..783 22..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:23 Download gff for BO16074.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 25..787 22..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:23 Download gff for BO16074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11345278..11346042 22..786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:01 Download gff for BO16074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7232783..7233547 22..786 99   Minus

BO16074.pep Sequence

Translation from 16 to 802

> BO16074.pep
MLKFAVLLSVLACALAGTIPDGLLPQLDGRIVGGYETSIDAHPYQVSLQR
YGSHFCGGSIYSHDIVITAAHCLQSIEAKDLKIRVGSTYWRSGGSVHSVR
SFRNHEGYNSRTMVNDIAIIRIESDLSFRSSIREIRIADSNPREGATAVV
SGWGTTESGGSTIPDHLLAVDLEIIDVSRCRSDEFGYGKKIKDTMLCAYA
PHKDACQGDSGGPLVSGDRLVGVVSWGYGCGDVRYPGVYADVAHFHEWIE
RTAEEVASFLDH

BO16074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-PA 256 CG18681-PA 1..256 1..256 1352 100 Plus
betaTry-PB 253 CG18211-PB 1..253 1..253 864 62.8 Plus
betaTry-PA 253 CG18211-PA 1..253 1..253 864 62.8 Plus
alphaTry-PA 256 CG18444-PA 1..256 1..256 864 62.5 Plus
CG30025-PA 253 CG30025-PA 1..253 1..253 849 62.5 Plus