Clone Sequence Records
BO16074.3prime Sequence
763 bp (684 high quality bases) assembled on 2006-06-16
> BO16074.3prime
ATGGTCTAGAAAGCTTGCCACCTCCTCGGCGGTCCTCTCGATCCACTCGT
GGAAGTGGGCAACGTCGGCGTAGACACCGGGATACCTCACATCACCGCAT
CCATAGCCCCAGGACACAACACCGACAAGGCGGTCTCCGGAGACAAGTGG
GCCACCGGAGTCACCCTGGCAGGCATCCTTGTGTGGGGCGTAGGCGCAGA
GCATGGTGTCCTTGATCTTCTTTCCGTATCCGAACTCATCCGAGCGGCAA
CGCGACACATCGATGATCTCCAGATCAACGGCCAGCAGATGATCGGGAAT
GGTGCTGCCACCGGACTCGGTGGTGCCCCAGCCGGAAACCACGGCGGTGG
CGCCCTCACGAGGGTTGGAGTCGGCAATACGGATCTCGCGAATGCTGGAG
CGGAAGCTCAGATCGGACTCGATGCGAATAATAGCAATGTCGTTGACCAT
GGTGCGGGAGTTGTAGCCCTCGTGGTTGCGGAAGGAGCGAACGGAGTGGA
CACTGCCGCCGGAGCGCCAGTAGGTGCTGCCCACACGAATCTTCAGGTCC
TTGGCCTCAATCGACTGCAGGCAGTGAGCGGCGGTGATCACAATGTCGTG
GGAGTAGATGGATCCACCGCAGAAGTGTGATCCATAGCGCTGCAAGGACA
CCTGGTAGGGATGGGCGTCGATGCTGGTCTCATAACCACCGACGATACGA
CCCATCCAACTGGGGCAGCAGGCCATCGGGAATGGTGGCAGCCAAGGCGC
AGGCCCAAACGGA
BO16074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18681-PA | 771 | epsilonTry-RA | 25..768 | 763..19 | 3635 | 99.5 | Minus |
CG12351-PA | 762 | deltaTry-RA | 606..650 | 181..137 | 200 | 97.7 | Minus |
CG30031-PA | 762 | CG30031-RA | 606..650 | 181..137 | 200 | 97.7 | Minus |
CG30025-PA | 762 | CG30025-RA | 606..650 | 181..137 | 200 | 97.7 | Minus |
CG30028-PA | 762 | gammaTry-RA | 606..650 | 181..137 | 200 | 97.7 | Minus |
CG18444-PA | 771 | alphaTry-RA | 606..650 | 181..137 | 200 | 97.7 | Minus |
CG18211-PA | 762 | betaTry-RA | 616..650 | 171..137 | 150 | 97.1 | Minus |
CG12351-PA | 762 | deltaTry-RA | 310..353 | 477..434 | 145 | 93.1 | Minus |
CG30031-PA | 762 | CG30031-RA | 310..353 | 477..434 | 145 | 93.1 | Minus |
CG30025-PA | 762 | CG30025-RA | 310..353 | 477..434 | 145 | 93.1 | Minus |
CG30028-PA | 762 | gammaTry-RA | 310..353 | 477..434 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-RA | 830 | CG18681-RA | 44..787 | 763..19 | 3670 | 99.6 | Minus |
gammaTry-RA | 810 | CG30028-RA | 49..368 | 754..434 | 305 | 74.5 | Minus |
deltaTry-RA | 810 | CG12351-RA | 48..367 | 754..434 | 305 | 74.5 | Minus |
gammaTry-RA | 810 | CG30028-RA | 621..743 | 181..59 | 300 | 82.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11345280..11346023 | 19..763 | 3645 | 99.6 | Plus |
2R | 25286936 | 2R | 11344365..11344487 | 59..181 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11349128..11349250 | 59..181 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11351432..11351554 | 181..59 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11353632..11353754 | 59..181 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11355938..11356060 | 181..59 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11346900..11347069 | 228..59 | 280 | 77.6 | Minus |
2R | 25286936 | 2R | 11349503..11349822 | 434..754 | 265 | 72.9 | Plus |
2R | 25286936 | 2R | 11350860..11351179 | 754..434 | 265 | 72.9 | Minus |
2R | 25286936 | 2R | 11354007..11354326 | 434..754 | 265 | 72.9 | Plus |
2R | 25286936 | 2R | 11355366..11355685 | 754..434 | 265 | 72.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:47:18 has no hits.
BO16074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:49 Download gff for
BO16074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18681-PA | 26..771 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:38 Download gff for
BO16074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 45..793 | 13..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:19 Download gff for
BO16074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 45..793 | 13..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:19 Download gff for
BO16074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11345274..11346022 | 13..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:38 Download gff for
BO16074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7232779..7233527 | 13..762 | 99 | | Plus |
BO16074.5prime Sequence
780 bp (744 high quality bases) assembled on 2006-06-16
> BO16074.5prime
GAAGTTATCAGTCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGG
CCTGCGCCTTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGAT
GGTCGTATCGTCGGTGGTTATGAGACCAGCATCGACGCCCATCCCTACCA
GGTGTCCTTGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACT
CCCACGACATTGTGATCACCGCCGCTCACTGCCTGCAGTCGATTGAGGCC
AAGGACCTGAAGATTCGTGTGGGCAGCACCTACTGGCGCTCCGGCGGCAG
TGTCCACTCCGTTCGCTCCTTCCGCAACCACGAGGGCTACAACTCCCGCA
CCATGGTCAACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTC
CGCTCCAGCATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGG
CGCCACCGCCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCAGCA
CCATTCCCGATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCG
CGTTGCCGCTCGGATGAGTTCGGATACGGAAAGAAGATCAAGGACACCAT
GCTCTGCGCCTACGCCCCACACAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTTGTCTCCGGAGACCGCCTTGTCGGTGTTGTGTCCTGNGGCTAT
GGATGCGGTGATGTGAGGTATCCCGGTGTCTACGCCGACGTTGCCCACTT
CCACGAGTGGATCGAGAGGACCGCCGAGGG
BO16074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18681-PA | 771 | epsilonTry-RA | 1..763 | 17..779 | 3796 | 99.8 | Plus |
CG12351-PA | 762 | deltaTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG30031-PA | 762 | CG30031-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG30025-PA | 762 | CG30025-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG30028-PA | 762 | gammaTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG18444-PA | 771 | alphaTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG18211-PA | 762 | betaTry-RA | 616..650 | 632..666 | 150 | 97.1 | Plus |
CG12351-PA | 762 | deltaTry-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
CG30031-PA | 762 | CG30031-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
CG30025-PA | 762 | CG30025-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
CG30028-PA | 762 | gammaTry-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-RA | 830 | CG18681-RA | 20..782 | 17..779 | 3804 | 99.9 | Plus |
gammaTry-RA | 810 | CG30028-RA | 49..368 | 50..369 | 340 | 75.1 | Plus |
deltaTry-RA | 810 | CG12351-RA | 48..367 | 50..369 | 340 | 75.1 | Plus |
gammaTry-RA | 810 | CG30028-RA | 621..743 | 622..744 | 289 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11345285..11346047 | 779..17 | 3804 | 99.9 | Minus |
2R | 25286936 | 2R | 11349503..11349822 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11350860..11351179 | 50..369 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11354007..11354326 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11355366..11355685 | 50..369 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11344365..11344487 | 744..622 | 289 | 82.1 | Minus |
2R | 25286936 | 2R | 11349128..11349250 | 744..622 | 289 | 82.1 | Minus |
2R | 25286936 | 2R | 11351432..11351554 | 622..744 | 289 | 82.1 | Plus |
2R | 25286936 | 2R | 11353632..11353754 | 744..622 | 289 | 82.1 | Minus |
2R | 25286936 | 2R | 11355938..11356060 | 622..744 | 289 | 82.1 | Plus |
2R | 25286936 | 2R | 11346375..11346695 | 50..370 | 285 | 72.6 | Plus |
2R | 25286936 | 2R | 11346900..11347069 | 575..744 | 269 | 77.1 | Plus |
2R | 25286936 | 2R | 11344739..11345061 | 370..48 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:24:22 has no hits.
BO16074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:50 Download gff for
BO16074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18681-PA | 1..763 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:47:55 Download gff for
BO16074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 20..782 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:15 Download gff for
BO16074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 20..782 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:15 Download gff for
BO16074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11345283..11346047 | 17..780 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:47:55 Download gff for
BO16074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7232788..7233552 | 17..780 | 99 | | Minus |
BO16074.complete Sequence
802 bp assembled on 2008-08-15
GenBank Submission: FJ633705
> BO16074.complete
GAAGTTATCAGTCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGG
CCTGCGCCTTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGAT
GGTCGTATCGTCGGTGGTTATGAGACCAGCATCGACGCCCATCCCTACCA
GGTGTCCTTGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACT
CCCACGACATTGTGATCACCGCCGCTCACTGCCTGCAGTCGATTGAGGCC
AAGGACCTGAAGATTCGTGTGGGCAGCACCTACTGGCGCTCCGGCGGCAG
TGTCCACTCCGTTCGCTCCTTCCGCAACCACGAGGGCTACAACTCCCGCA
CCATGGTCAACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTC
CGCTCCAGCATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGG
CGCCACCGCCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCAGCA
CCATTCCCGATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCG
CGTTGCCGCTCGGATGAGTTCGGATACGGAAAGAAGATCAAGGACACCAT
GCTCTGCGCCTACGCCCCACACAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTTGTCTCCGGAGACCGCCTTGTCGGTGTTGTGTCCTGGGGCTAT
GGATGCGGTGATGTGAGGTATCCCGGTGTCTACGCCGACGTTGCCCACTT
CCACGAGTGGATCGAGAGGACCGCCGAGGAGGTGGCAAGCTTTCTAGACC
AT
BO16074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-RA | 771 | CG18681-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
gammaTry-RA | 762 | CG30028-PA | 34..353 | 50..369 | 325 | 73.4 | Plus |
deltaTry-RA | 762 | CG12351-PA | 34..353 | 50..369 | 325 | 73.4 | Plus |
gammaTry-RA | 762 | CG30028-PA | 606..728 | 622..744 | 300 | 82.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-RA | 830 | CG18681-RA | 20..787 | 17..784 | 3840 | 100 | Plus |
gammaTry-RA | 810 | CG30028-RA | 49..368 | 50..369 | 325 | 73.4 | Plus |
deltaTry-RA | 810 | CG12351-RA | 48..367 | 50..369 | 325 | 73.4 | Plus |
gammaTry-RA | 810 | CG30028-RA | 621..743 | 622..744 | 300 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11345280..11346047 | 784..17 | 3840 | 100 | Minus |
2R | 25286936 | 2R | 11349503..11349822 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11350860..11351179 | 50..369 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11354007..11354326 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11355366..11355685 | 50..369 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11344365..11344487 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11349128..11349250 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11351432..11351554 | 622..744 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11353632..11353754 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11355938..11356060 | 622..744 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11346375..11346695 | 50..370 | 285 | 72.6 | Plus |
2R | 25286936 | 2R | 11346900..11347069 | 575..744 | 280 | 77.6 | Plus |
2R | 25286936 | 2R | 11344739..11345061 | 370..48 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:54 has no hits.
BO16074.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:18 Download gff for
BO16074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 16..789 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:01 Download gff for
BO16074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 25..787 | 22..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:18 Download gff for
BO16074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 21..783 | 22..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:23 Download gff for
BO16074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 25..787 | 22..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:23 Download gff for
BO16074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11345278..11346042 | 22..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:01 Download gff for
BO16074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7232783..7233547 | 22..786 | 99 | | Minus |
BO16074.pep Sequence
Translation from 16 to 802
> BO16074.pep
MLKFAVLLSVLACALAGTIPDGLLPQLDGRIVGGYETSIDAHPYQVSLQR
YGSHFCGGSIYSHDIVITAAHCLQSIEAKDLKIRVGSTYWRSGGSVHSVR
SFRNHEGYNSRTMVNDIAIIRIESDLSFRSSIREIRIADSNPREGATAVV
SGWGTTESGGSTIPDHLLAVDLEIIDVSRCRSDEFGYGKKIKDTMLCAYA
PHKDACQGDSGGPLVSGDRLVGVVSWGYGCGDVRYPGVYADVAHFHEWIE
RTAEEVASFLDH
BO16074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-PA | 256 | CG18681-PA | 1..256 | 1..256 | 1352 | 100 | Plus |
betaTry-PB | 253 | CG18211-PB | 1..253 | 1..253 | 864 | 62.8 | Plus |
betaTry-PA | 253 | CG18211-PA | 1..253 | 1..253 | 864 | 62.8 | Plus |
alphaTry-PA | 256 | CG18444-PA | 1..256 | 1..256 | 864 | 62.5 | Plus |
CG30025-PA | 253 | CG30025-PA | 1..253 | 1..253 | 849 | 62.5 | Plus |