Clone Sequence Records
BO16076.3prime Sequence
641 bp (636 high quality bases) assembled on 2006-06-16
> BO16076.3prime
ATGGTCTAGAAAGCTTGCCAAATGGAGTTCGTTTAGTCCCAGGGATGCAT
TCGGATCTTCTTCCGGGAAGGTGTCAAAATCAATGGTGATCGTTTTTTTC
TGGGGGATGTGTCGCTTATATTCCACGCCCACTGCATCCAGCATCCGCTT
GGATGCACGATATGTGGGCTTATCGGCATATTTGTCGGACAAATATAGCA
CCTGAGATATGCCCACCTGTATAATGAGTTTGGCACATTCGTTGCACGGA
AATAGTGTGGTATACAGTCGAGTTCCAGACAAACTCATGCCGTTGCTGTT
CAGGATTGCATTGGCCTCCGCGTGGACCACGTACATCTTCTTGTCTTCCA
GGGGATCAAATTCCTGCGAGCCTTTCTTAGCTTTTGACCACGGAAACACG
TCATCGCTGCAGTTGCGAGGGAACCCATTGTATCCAATGGCCACTATCCG
ATTCTGGGAATCCACGATGCAGGCGCCCACTTGGGTGACGGGATCTTTGC
TGCGTTTGGCGGAGAGCAGTGAGGTGGCCATAAAGTAGTCATCCCAATGC
AGATATTCCTTTCTCTTGTGGCTTTCGGGTGACTTCGACAACTGGGATAT
CAAATCTTGAGCGGAAACTTCAGCCATGTCGACTGATAACT
BO16076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-PB | 612 | CG6951-RB | 1..609 | 627..19 | 3045 | 100 | Minus |
CG6951-PA | 612 | CG6951-RA | 1..609 | 627..19 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-RA | 910 | CG6951-RA | 125..733 | 627..19 | 3045 | 100 | Minus |
CG6951-RB | 1062 | CG6951-RB | 277..885 | 627..19 | 3045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20244167..20244579 | 627..215 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 20244935..20245135 | 219..19 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 08:22:55 has no hits.
BO16076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:52 Download gff for
BO16076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-PA | 1..612 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:54:15 Download gff for
BO16076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 271..888 | 15..636 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:04 Download gff for
BO16076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 271..888 | 15..636 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:04 Download gff for
BO16076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20244164..20244577 | 217..630 | 99 | -> | Minus |
3L | 20244938..20245138 | 15..216 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:54:15 Download gff for
BO16076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20237264..20237677 | 217..630 | 99 | -> | Minus |
arm_3L | 20238038..20238238 | 15..216 | 99 | | Minus |
BO16076.5prime Sequence
641 bp (641 high quality bases) assembled on 2006-06-16
> BO16076.5prime
GAAGTTATCAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCC
AGTTGTCGAAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGG
GATGACTACTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGA
TCCCGTCACCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAG
TGGCCATTGGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTT
CCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGA
CAAGAAGATGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCA
ACGGCATGAGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGC
AACGAATGTGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATA
TTTGTCCGACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGA
TGCTGGATGCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAA
ACGATCACCATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATC
CCTGGGACTAAACGAACTCCATTTGGCAAGCTTTCTAGACC
BO16076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-PB | 612 | CG6951-RB | 1..609 | 17..625 | 3045 | 100 | Plus |
CG6951-PA | 612 | CG6951-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-RA | 910 | CG6951-RA | 125..733 | 17..625 | 3045 | 100 | Plus |
CG6951-RB | 1062 | CG6951-RB | 277..885 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20244167..20244579 | 17..429 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 20244935..20245135 | 425..625 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:03:59 has no hits.
BO16076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:53 Download gff for
BO16076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-PA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:15:06 Download gff for
BO16076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 271..888 | 8..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:49 Download gff for
BO16076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 271..888 | 8..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:49 Download gff for
BO16076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20244164..20244577 | 14..427 | 99 | -> | Plus |
3L | 20244938..20245138 | 428..629 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:15:06 Download gff for
BO16076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20238038..20238238 | 428..629 | 99 | | Plus |
arm_3L | 20237264..20237677 | 14..427 | 99 | -> | Plus |
BO16076.complete Sequence
643 bp assembled on 2008-08-15
GenBank Submission: FJ633707
> BO16076.complete
GAAGTTATCAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCC
AGTTGTCGAAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGG
GATGACTACTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGA
TCCCGTCACCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAG
TGGCCATTGGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTT
CCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGA
CAAGAAGATGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCA
ACGGCATGAGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGC
AACGAATGTGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATA
TTTGTCCGACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGA
TGCTGGATGCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAA
ACGATCACCATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATC
CCTGGGACTAAACGAACTCCATTTGGCAAGCTTTCTAGACCAT
BO16076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-RA | 612 | CG6951-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
CG6951-RB | 612 | CG6951-PB | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-RA | 910 | CG6951-RA | 125..733 | 17..625 | 3045 | 100 | Plus |
CG6951-RB | 1062 | CG6951-RB | 277..885 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20244167..20244579 | 17..429 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 20244935..20245135 | 425..625 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:01:21 has no hits.
BO16076.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:15 Download gff for
BO16076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RA | 82..700 | 9..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:31 Download gff for
BO16076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 277..885 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:14 Download gff for
BO16076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RA | 89..697 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:05 Download gff for
BO16076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 277..885 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:05 Download gff for
BO16076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20244167..20244577 | 17..427 | 100 | -> | Plus |
3L | 20244938..20245135 | 428..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:31 Download gff for
BO16076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20237267..20237677 | 17..427 | 100 | -> | Plus |
arm_3L | 20238038..20238235 | 428..627 | 99 | | Plus |
BO16076.pep Sequence
Translation from 16 to 643
> BO16076.pep
MAEVSAQDLISQLSKSPESHKRKEYLHWDDYFMATSLLSAKRSKDPVTQV
GACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAKKGSQEFDPLEDKKMYV
VHAEANAILNSNGMSLSGTRLYTTLFPCNECAKLIIQVGISQVLYLSDKY
ADKPTYRASKRMLDAVGVEYKRHIPQKKTITIDFDTFPEEDPNASLGLNE
LHLASFLDH
BO16076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-PA | 203 | CG6951-PA | 1..203 | 1..203 | 1061 | 100 | Plus |
CG6951-PB | 203 | CG6951-PB | 1..203 | 1..203 | 1061 | 100 | Plus |