Clone BO16076 Report

Search the DGRC for BO16076

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG6951-RA
Protein status:BO16076.pep: Imported from assembly
Sequenced Size:643

Clone Sequence Records

BO16076.3prime Sequence

641 bp (636 high quality bases) assembled on 2006-06-16

> BO16076.3prime
ATGGTCTAGAAAGCTTGCCAAATGGAGTTCGTTTAGTCCCAGGGATGCAT
TCGGATCTTCTTCCGGGAAGGTGTCAAAATCAATGGTGATCGTTTTTTTC
TGGGGGATGTGTCGCTTATATTCCACGCCCACTGCATCCAGCATCCGCTT
GGATGCACGATATGTGGGCTTATCGGCATATTTGTCGGACAAATATAGCA
CCTGAGATATGCCCACCTGTATAATGAGTTTGGCACATTCGTTGCACGGA
AATAGTGTGGTATACAGTCGAGTTCCAGACAAACTCATGCCGTTGCTGTT
CAGGATTGCATTGGCCTCCGCGTGGACCACGTACATCTTCTTGTCTTCCA
GGGGATCAAATTCCTGCGAGCCTTTCTTAGCTTTTGACCACGGAAACACG
TCATCGCTGCAGTTGCGAGGGAACCCATTGTATCCAATGGCCACTATCCG
ATTCTGGGAATCCACGATGCAGGCGCCCACTTGGGTGACGGGATCTTTGC
TGCGTTTGGCGGAGAGCAGTGAGGTGGCCATAAAGTAGTCATCCCAATGC
AGATATTCCTTTCTCTTGTGGCTTTCGGGTGACTTCGACAACTGGGATAT
CAAATCTTGAGCGGAAACTTCAGCCATGTCGACTGATAACT

BO16076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-PB 612 CG6951-RB 1..609 627..19 3045 100 Minus
CG6951-PA 612 CG6951-RA 1..609 627..19 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-RA 910 CG6951-RA 125..733 627..19 3045 100 Minus
CG6951-RB 1062 CG6951-RB 277..885 627..19 3045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20244167..20244579 627..215 2065 100 Minus
3L 28110227 3L 20244935..20245135 219..19 1005 100 Minus
Blast to na_te.dros performed on 2015-02-11 08:22:55 has no hits.

BO16076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:52 Download gff for BO16076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-PA 1..612 15..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:54:15 Download gff for BO16076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 271..888 15..636 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:04 Download gff for BO16076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 271..888 15..636 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:04 Download gff for BO16076.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20244164..20244577 217..630 99 -> Minus
3L 20244938..20245138 15..216 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:54:15 Download gff for BO16076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20237264..20237677 217..630 99 -> Minus
arm_3L 20238038..20238238 15..216 99   Minus

BO16076.5prime Sequence

641 bp (641 high quality bases) assembled on 2006-06-16

> BO16076.5prime
GAAGTTATCAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCC
AGTTGTCGAAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGG
GATGACTACTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGA
TCCCGTCACCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAG
TGGCCATTGGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTT
CCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGA
CAAGAAGATGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCA
ACGGCATGAGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGC
AACGAATGTGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATA
TTTGTCCGACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGA
TGCTGGATGCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAA
ACGATCACCATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATC
CCTGGGACTAAACGAACTCCATTTGGCAAGCTTTCTAGACC

BO16076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-PB 612 CG6951-RB 1..609 17..625 3045 100 Plus
CG6951-PA 612 CG6951-RA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-RA 910 CG6951-RA 125..733 17..625 3045 100 Plus
CG6951-RB 1062 CG6951-RB 277..885 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20244167..20244579 17..429 2065 100 Plus
3L 28110227 3L 20244935..20245135 425..625 1005 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:03:59 has no hits.

BO16076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:53 Download gff for BO16076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-PA 1..612 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:15:06 Download gff for BO16076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 271..888 8..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:49 Download gff for BO16076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 271..888 8..629 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:49 Download gff for BO16076.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20244164..20244577 14..427 99 -> Plus
3L 20244938..20245138 428..629 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:15:06 Download gff for BO16076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20238038..20238238 428..629 99   Plus
arm_3L 20237264..20237677 14..427 99 -> Plus

BO16076.complete Sequence

643 bp assembled on 2008-08-15

GenBank Submission: FJ633707

> BO16076.complete
GAAGTTATCAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCC
AGTTGTCGAAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGG
GATGACTACTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGA
TCCCGTCACCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAG
TGGCCATTGGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTT
CCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGA
CAAGAAGATGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCA
ACGGCATGAGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGC
AACGAATGTGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATA
TTTGTCCGACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGA
TGCTGGATGCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAA
ACGATCACCATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATC
CCTGGGACTAAACGAACTCCATTTGGCAAGCTTTCTAGACCAT

BO16076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-RA 612 CG6951-PA 1..609 17..625 3045 100 Plus
CG6951-RB 612 CG6951-PB 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-RA 910 CG6951-RA 125..733 17..625 3045 100 Plus
CG6951-RB 1062 CG6951-RB 277..885 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20244167..20244579 17..429 2065 100 Plus
3L 28110227 3L 20244935..20245135 425..625 1005 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:01:21 has no hits.

BO16076.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:15 Download gff for BO16076.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RA 82..700 9..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:31 Download gff for BO16076.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 277..885 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:14 Download gff for BO16076.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RA 89..697 17..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:05 Download gff for BO16076.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 277..885 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:05 Download gff for BO16076.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20244167..20244577 17..427 100 -> Plus
3L 20244938..20245135 428..627 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:31 Download gff for BO16076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20237267..20237677 17..427 100 -> Plus
arm_3L 20238038..20238235 428..627 99   Plus

BO16076.pep Sequence

Translation from 16 to 643

> BO16076.pep
MAEVSAQDLISQLSKSPESHKRKEYLHWDDYFMATSLLSAKRSKDPVTQV
GACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAKKGSQEFDPLEDKKMYV
VHAEANAILNSNGMSLSGTRLYTTLFPCNECAKLIIQVGISQVLYLSDKY
ADKPTYRASKRMLDAVGVEYKRHIPQKKTITIDFDTFPEEDPNASLGLNE
LHLASFLDH

BO16076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-PA 203 CG6951-PA 1..203 1..203 1061 100 Plus
CG6951-PB 203 CG6951-PB 1..203 1..203 1061 100 Plus