Clone Sequence Records
BO16077.3prime Sequence
718 bp (703 high quality bases) assembled on 2006-06-16
> BO16077.3prime
ATGGTCTAGAAAGCTTGCCGCACTTGCCGCATGAGGTTTTGCATAGCTGG
GGAAGTTCAGTTTCAGACCCTCCTTGGCCTCGAAGAAGGTGTACGAAAGG
GTGATGGTGTCACAGGTCTCCAGCGCCGGATCTGCCGTTATTTCGGGATC
GATGTAGAAGAAGACGGGCATGTCCACCTCCTCGTGTGGATTCAGTTGCT
GTTCCTCGAAGCAAAAGCATTGGATTTTGTTGAAATACGCGCCCGCCTCG
AAGGGAATCACATTGTACGTGCTGATGCCAATTACCGGCTTATCCGTGGG
ATTTCGCGCCGTGTAAAAGGCCAGAGCAGTCTCGCCAGGAGCTACTTTGA
TCTCGTACTGCTGCGGCTTGAAGTTCCAGCGCATCGAGGATCCAATGTCG
GCGTTGAAACGGATCTTCAGCACCCGATCCTCGATCTTTTTCATGTGCTC
CACCTTTTCGGCATCGTGCCCCTGCGTGGTGGTCCCTCCGTAACTGTAGG
CCTGGCAGAAGATGCTGTACAGCGGCACAGCAGCATAGCTCAGGCCCACA
ATCAGCACACCGCCGGCGGTTATGTAGTAGAGTGTGGATTTCGCACGCAA
TTTACGGGCGGCATCCTCCGGAGAATCCGTCGATTTCATGCGCCAAAATT
GTTGTGACTTATGGACTGAGTTTTGAGGGCGGATGGAGCTCCTGAACAGT
TGCTGGGATTGTCCACGG
BO16077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31648-PA | 726 | CG31648-RA | 24..723 | 718..19 | 3475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31648-RA | 898 | CG31648-RA | 142..841 | 718..19 | 3485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5527098..5527797 | 718..19 | 3485 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-10 21:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver | 6112 | diver Tinker 6112bp | 4954..4993 | 385..347 | 116 | 80 | Minus |
BO16077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:54 Download gff for
BO16077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-PA | 24..726 | 16..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:10 Download gff for
BO16077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-RA | 142..846 | 14..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:12 Download gff for
BO16077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-RA | 142..846 | 14..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:12 Download gff for
BO16077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5527098..5527802 | 14..718 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:10 Download gff for
BO16077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5527098..5527802 | 14..718 | 99 | | Minus |
BO16077.5prime Sequence
755 bp (735 high quality bases) assembled on 2006-06-16
> BO16077.5prime
GAAGTTATCAGTCGACATGATGCGCAGCCTTTGTGCCCTCCGTGGACAAT
GCCAGCAACTGTTCAGGAGCTCCATCCGCCCTCAAAACTCAGTCCATAAG
TCACAACAATTTTGGCGCATGAAATCGACGGATTCTCCGGAGGATGCCGC
CCGTAAATTGCGTGCGAAATCCACACTCTACTACATAACCGCCGGCGGTG
TGCTGATTGTGGGCCTGAGCTATGCTGCTGTGCCGCTGTACAGCATCTTC
TGCCAGGCCTACAGTTACGGAGGGACCACCACGCAGGGGCACGATGCCGA
AAAGGTGGAGCACATGAAAAAGATCGAGGATCGGGTGCTGAAGATCCGTT
TCAACGCCGACATTGGATCCTCGATGCGCTGGAACTTCAAGCCGCAGCAG
TACGAGATCAAAGTAGCTCCTGGCGAGACTGCTCTGGCCTTTTACACGGC
GCGAAATCCCACGGATAAGCCGGTAATTGGCATCAGCACGTACAATGTGA
TTCCCTTCGAGGCGGGCGCGTATTTCAACAAAATCCAATGCTTTTGCTTC
GAGGAACAGCAACTGAATCCACACGAGGAGGTGGACATGCCCGTCTTCTT
CTACATCGATCCCGAAATAACGGCAGATCCGGCGCTGGAGACCTGTGACA
CCATCACCCTTTCGTACACCTTCTTCGAGGCCAAGGAGGGTCTGAAACTG
AACTTCCCCAGCTATGCAAAACCTCATGCGGCAAGTGCGGCAAGCTTTCT
AGACC
BO16077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31648-PA | 726 | CG31648-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31648-RA | 898 | CG31648-RA | 119..841 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5527075..5527797 | 17..739 | 3615 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver | 6112 | diver Tinker 6112bp | 4954..4993 | 373..411 | 116 | 80 | Plus |
BO16077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:55 Download gff for
BO16077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-PA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:18:36 Download gff for
BO16077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-RA | 119..846 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:41 Download gff for
BO16077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-RA | 119..846 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:41 Download gff for
BO16077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5527075..5527802 | 17..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:18:36 Download gff for
BO16077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5527075..5527802 | 17..744 | 99 | | Plus |
BO16077.complete Sequence
757 bp assembled on 2008-08-15
GenBank Submission: FJ633708
> BO16077.complete
GAAGTTATCAGTCGACATGATGCGCAGCCTTTGTGCCCTCCGTGGACAAT
GCCAGCAACTGTTCAGGAGCTCCATCCGCCCTCAAAACTCAGTCCATAAG
TCACAACAATTTTGGCGCATGAAATCGACGGATTCTCCGGAGGATGCCGC
CCGTAAATTGCGTGCGAAATCCACACTCTACTACATAACCGCCGGCGGTG
TGCTGATTGTGGGCCTGAGCTATGCTGCTGTGCCGCTGTACAGCATCTTC
TGCCAGGCCTACAGTTACGGAGGGACCACCACGCAGGGGCACGATGCCGA
AAAGGTGGAGCACATGAAAAAGATCGAGGATCGGGTGCTGAAGATCCGTT
TCAACGCCGACATTGGATCCTCGATGCGCTGGAACTTCAAGCCGCAGCAG
TACGAGATCAAAGTAGCTCCTGGCGAGACTGCTCTGGCCTTTTACACGGC
GCGAAATCCCACGGATAAGCCGGTAATTGGCATCAGCACGTACAATGTGA
TTCCCTTCGAGGCGGGCGCGTATTTCAACAAAATCCAATGCTTTTGCTTC
GAGGAACAGCAACTGAATCCACACGAGGAGGTGGACATGCCCGTCTTCTT
CTACATCGATCCCGAAATAACGGCAGATCCGGCGCTGGAGACCTGTGACA
CCATCACCCTTTCGTACACCTTCTTCGAGGCCAAGGAGGGTCTGAAACTG
AACTTCCCCAGCTATGCAAAACCTCATGCGGCAAGTGCGGCAAGCTTTCT
AGACCAT
BO16077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31648-RA | 726 | CG31648-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31648-RA | 898 | CG31648-RA | 119..841 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5527075..5527797 | 17..739 | 3615 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver | 6112 | diver Tinker 6112bp | 4954..4993 | 373..411 | 116 | 80 | Plus |
BO16077.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:37 Download gff for
BO16077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-RA | 113..838 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:51 Download gff for
BO16077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-RA | 119..841 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:36 Download gff for
BO16077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-RA | 113..835 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:48 Download gff for
BO16077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31648-RA | 119..841 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:48 Download gff for
BO16077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5527075..5527797 | 17..741 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:51 Download gff for
BO16077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5527075..5527797 | 17..741 | 99 | | Plus |
BO16077.pep Sequence
Translation from 16 to 757
> BO16077.pep
MMRSLCALRGQCQQLFRSSIRPQNSVHKSQQFWRMKSTDSPEDAARKLRA
KSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHM
KKIEDRVLKIRFNADIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTD
KPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPE
ITADPALETCDTITLSYTFFEAKEGLKLNFPSYAKPHAASAASFLDH
BO16077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31648-PA | 241 | CG31648-PA | 1..241 | 1..241 | 1274 | 100 | Plus |
