Clone Sequence Records
BO16078.3prime Sequence
533 bp (533 high quality bases) assembled on 2006-06-16
> BO16078.3prime
ATGGTCTAGAAAGCTTGCGTTCTGGGCCTCGTAGGTGAGGTCGTCCTGGG
CCGGATGCTTGTGGGTGCGGCGATGGCGCATAATGTATGGATGGGTGGTT
GAGTTCTCGTAGCTGGACAAGTAGCGCAGACTAAGTAGGTTCTCCGGGTA
CTTCTGCAGCAGGTACACCCAGCATGGAACGGTTCCTTCTCCAACGCCAA
TGTTCATATCGTGCATCTCGCGAGTGTAGATCTCCTCGCAATCCTCCAGG
TTGTCCAGGGAATTCAGCATTCGATCGTCCACCTCGTAGATCTCCCCTGT
TACGTAATATCCCACTCCGGGCTTGTTCAGCAGGAAGGGAATGTTGTAGC
GGGTGGCGATCACTAGCGGCAGCTTTTGGGTGGTGGTCGCCTTGCACCAG
AACTTAGCGAAGCCGTTGCCAGAGCTGGCCAGGATTGAGTTGCTGGGCTG
TCCGTACTTGAGGGCGCCGTACACGAAGAGCTTGCTCAAGGCGGAGGAGA
CTTTCTTTGCTTGGCCCATGTCGACTGATAACT
BO16078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2803-PA | 504 | Tina-1-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
CG2803-PB | 255 | Tina-1-RB | 1..252 | 270..19 | 1260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-RA | 914 | CG2803-RA | 150..650 | 519..19 | 2505 | 100 | Minus |
Tina-1-RB | 1429 | CG2803-RB | 678..1165 | 506..19 | 2440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24941122..24941443 | 185..506 | 1610 | 100 | Plus |
2R | 25286936 | 2R | 24940889..24941055 | 19..185 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:32:32 has no hits.
BO16078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:56 Download gff for
BO16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2803-PA | 1..504 | 15..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:01:25 Download gff for
BO16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 145..653 | 15..526 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:59 Download gff for
BO16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 145..653 | 15..526 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:59 Download gff for
BO16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24940886..24941054 | 15..184 | 98 | <- | Plus |
2R | 24941122..24941441 | 185..504 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:01:25 Download gff for
BO16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20828409..20828577 | 15..184 | 98 | <- | Plus |
arm_2R | 20828645..20828964 | 185..504 | 100 | <- | Plus |
BO16078.5prime Sequence
533 bp (533 high quality bases) assembled on 2006-06-16
> BO16078.5prime
GAAGTTATCAGTCGACATGGGCCAAGCAAAGAAAGTCTCCTCCGCCTTGA
GCAAGCTCTTCGTGTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCA
ATCCTGGCCAGCTCTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGAC
CACCACCCAAAAGCTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCT
TCCTGCTGAACAAGCCCGGAGTGGGATATTACGTAACAGGGGAGATCTAC
GAGGTGGACGATCGAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGA
GGAGATCTACACTCGCGAGATGCACGATATGAACATTGGCGTTGGAGAAG
GAACCGTTCCATGCTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTA
CTTAGTCTGCGCTACTTGTCCAGCTACGAGAACTCAACCACCCATCCATA
CATTATGCGCCATCGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCA
CCTACGAGGCCCAGAACGCAAGCTTTCTAGACC
BO16078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2803-PA | 504 | Tina-1-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
CG2803-PB | 255 | Tina-1-RB | 1..252 | 266..517 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-RA | 914 | CG2803-RA | 150..650 | 17..517 | 2505 | 100 | Plus |
Tina-1-RB | 1429 | CG2803-RB | 678..1165 | 30..517 | 2440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24941122..24941443 | 351..30 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 24940889..24941055 | 517..351 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 06:40:18 has no hits.
BO16078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:56 Download gff for
BO16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2803-PA | 1..504 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:12:33 Download gff for
BO16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 145..653 | 10..521 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:43:56 Download gff for
BO16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 145..653 | 10..521 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:43:56 Download gff for
BO16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24940886..24941054 | 352..521 | 98 | <- | Minus |
2R | 24941122..24941441 | 32..351 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:12:33 Download gff for
BO16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20828409..20828577 | 352..521 | 98 | <- | Minus |
arm_2R | 20828645..20828964 | 32..351 | 100 | <- | Minus |
BO16078.complete Sequence
535 bp assembled on 2008-08-15
GenBank Submission: FJ633709
> BO16078.complete
GAAGTTATCAGTCGACATGGGCCAAGCAAAGAAAGTCTCCTCCGCCTTGA
GCAAGCTCTTCGTGTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCA
ATCCTGGCCAGCTCTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGAC
CACCACCCAAAAGCTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCT
TCCTGCTGAACAAGCCCGGAGTGGGATATTACGTAACAGGGGAGATCTAC
GAGGTGGACGATCGAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGA
GGAGATCTACACTCGCGAGATGCACGATATGAACATTGGCGTTGGAGAAG
GAACCGTTCCATGCTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTA
CTTAGTCTGCGCTACTTGTCCAGCTACGAGAACTCAACCACCCATCCATA
CATTATGCGCCATCGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCA
CCTACGAGGCCCAGAACGCAAGCTTTCTAGACCAT
BO16078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-RA | 504 | CG2803-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Tina-1-RB | 255 | CG2803-PB | 1..252 | 266..517 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-RA | 914 | CG2803-RA | 150..650 | 17..517 | 2505 | 100 | Plus |
Tina-1-RB | 1429 | CG2803-RB | 678..1165 | 30..517 | 2440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24941122..24941443 | 351..30 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 24940889..24941055 | 517..351 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:49:30 has no hits.
BO16078.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:59 Download gff for
BO16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 141..649 | 10..521 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:02 Download gff for
BO16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 150..650 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:02 Download gff for
BO16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 146..646 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:48 Download gff for
BO16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 150..650 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:48 Download gff for
BO16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24940887..24941054 | 352..519 | 98 | <- | Minus |
2R | 24941122..24941441 | 32..351 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:02 Download gff for
BO16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20828410..20828577 | 352..519 | 98 | <- | Minus |
arm_2R | 20828645..20828964 | 32..351 | 100 | <- | Minus |
BO16078.pep Sequence
Translation from 16 to 535
> BO16078.pep
MGQAKKVSSALSKLFVYGALKYGQPSNSILASSGNGFAKFWCKATTTQKL
PLVIATRYNIPFLLNKPGVGYYVTGEIYEVDDRMLNSLDNLEDCEEIYTR
EMHDMNIGVGEGTVPCWVYLLQKYPENLLSLRYLSSYENSTTHPYIMRHR
RTHKHPAQDDLTYEAQNASFLDH
BO16078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-PA | 167 | CG2803-PA | 1..167 | 1..167 | 893 | 100 | Plus |
Tina-1-PB | 84 | CG2803-PB | 1..84 | 84..167 | 462 | 100 | Plus |
CG2811-PA | 157 | CG2811-PA | 2..157 | 4..163 | 336 | 43.8 | Plus |
CG2811-PB | 157 | CG2811-PB | 2..141 | 4..145 | 320 | 44.4 | Plus |
CG2811-PC | 151 | CG2811-PC | 3..135 | 12..145 | 319 | 44.8 | Plus |