Clone BO16078 Report

Search the DGRC for BO16078

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptTina-1-RA
Protein status:BO16078.pep: Imported from assembly
Sequenced Size:535

Clone Sequence Records

BO16078.3prime Sequence

533 bp (533 high quality bases) assembled on 2006-06-16

> BO16078.3prime
ATGGTCTAGAAAGCTTGCGTTCTGGGCCTCGTAGGTGAGGTCGTCCTGGG
CCGGATGCTTGTGGGTGCGGCGATGGCGCATAATGTATGGATGGGTGGTT
GAGTTCTCGTAGCTGGACAAGTAGCGCAGACTAAGTAGGTTCTCCGGGTA
CTTCTGCAGCAGGTACACCCAGCATGGAACGGTTCCTTCTCCAACGCCAA
TGTTCATATCGTGCATCTCGCGAGTGTAGATCTCCTCGCAATCCTCCAGG
TTGTCCAGGGAATTCAGCATTCGATCGTCCACCTCGTAGATCTCCCCTGT
TACGTAATATCCCACTCCGGGCTTGTTCAGCAGGAAGGGAATGTTGTAGC
GGGTGGCGATCACTAGCGGCAGCTTTTGGGTGGTGGTCGCCTTGCACCAG
AACTTAGCGAAGCCGTTGCCAGAGCTGGCCAGGATTGAGTTGCTGGGCTG
TCCGTACTTGAGGGCGCCGTACACGAAGAGCTTGCTCAAGGCGGAGGAGA
CTTTCTTTGCTTGGCCCATGTCGACTGATAACT

BO16078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2803-PA 504 Tina-1-RA 1..501 519..19 2505 100 Minus
CG2803-PB 255 Tina-1-RB 1..252 270..19 1260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-RA 914 CG2803-RA 150..650 519..19 2505 100 Minus
Tina-1-RB 1429 CG2803-RB 678..1165 506..19 2440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24941122..24941443 185..506 1610 100 Plus
2R 25286936 2R 24940889..24941055 19..185 835 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:32:32 has no hits.

BO16078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:56 Download gff for BO16078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2803-PA 1..504 15..519 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:01:25 Download gff for BO16078.3prime
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 145..653 15..526 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:59 Download gff for BO16078.3prime
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 145..653 15..526 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:59 Download gff for BO16078.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24940886..24941054 15..184 98 <- Plus
2R 24941122..24941441 185..504 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:01:25 Download gff for BO16078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20828409..20828577 15..184 98 <- Plus
arm_2R 20828645..20828964 185..504 100 <- Plus

BO16078.5prime Sequence

533 bp (533 high quality bases) assembled on 2006-06-16

> BO16078.5prime
GAAGTTATCAGTCGACATGGGCCAAGCAAAGAAAGTCTCCTCCGCCTTGA
GCAAGCTCTTCGTGTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCA
ATCCTGGCCAGCTCTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGAC
CACCACCCAAAAGCTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCT
TCCTGCTGAACAAGCCCGGAGTGGGATATTACGTAACAGGGGAGATCTAC
GAGGTGGACGATCGAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGA
GGAGATCTACACTCGCGAGATGCACGATATGAACATTGGCGTTGGAGAAG
GAACCGTTCCATGCTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTA
CTTAGTCTGCGCTACTTGTCCAGCTACGAGAACTCAACCACCCATCCATA
CATTATGCGCCATCGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCA
CCTACGAGGCCCAGAACGCAAGCTTTCTAGACC

BO16078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2803-PA 504 Tina-1-RA 1..501 17..517 2505 100 Plus
CG2803-PB 255 Tina-1-RB 1..252 266..517 1260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-RA 914 CG2803-RA 150..650 17..517 2505 100 Plus
Tina-1-RB 1429 CG2803-RB 678..1165 30..517 2440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24941122..24941443 351..30 1610 100 Minus
2R 25286936 2R 24940889..24941055 517..351 835 100 Minus
Blast to na_te.dros performed on 2015-01-31 06:40:18 has no hits.

BO16078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:56 Download gff for BO16078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2803-PA 1..504 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:12:33 Download gff for BO16078.5prime
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 145..653 10..521 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:43:56 Download gff for BO16078.5prime
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 145..653 10..521 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:43:56 Download gff for BO16078.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24940886..24941054 352..521 98 <- Minus
2R 24941122..24941441 32..351 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:12:33 Download gff for BO16078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20828409..20828577 352..521 98 <- Minus
arm_2R 20828645..20828964 32..351 100 <- Minus

BO16078.complete Sequence

535 bp assembled on 2008-08-15

GenBank Submission: FJ633709

> BO16078.complete
GAAGTTATCAGTCGACATGGGCCAAGCAAAGAAAGTCTCCTCCGCCTTGA
GCAAGCTCTTCGTGTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCA
ATCCTGGCCAGCTCTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGAC
CACCACCCAAAAGCTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCT
TCCTGCTGAACAAGCCCGGAGTGGGATATTACGTAACAGGGGAGATCTAC
GAGGTGGACGATCGAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGA
GGAGATCTACACTCGCGAGATGCACGATATGAACATTGGCGTTGGAGAAG
GAACCGTTCCATGCTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTA
CTTAGTCTGCGCTACTTGTCCAGCTACGAGAACTCAACCACCCATCCATA
CATTATGCGCCATCGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCA
CCTACGAGGCCCAGAACGCAAGCTTTCTAGACCAT

BO16078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-RA 504 CG2803-PA 1..501 17..517 2505 100 Plus
Tina-1-RB 255 CG2803-PB 1..252 266..517 1260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-RA 914 CG2803-RA 150..650 17..517 2505 100 Plus
Tina-1-RB 1429 CG2803-RB 678..1165 30..517 2440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24941122..24941443 351..30 1610 100 Minus
2R 25286936 2R 24940889..24941055 517..351 835 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:49:30 has no hits.

BO16078.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:59 Download gff for BO16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 141..649 10..521 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:02 Download gff for BO16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 150..650 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:02 Download gff for BO16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 146..646 17..519 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:48 Download gff for BO16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 150..650 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:48 Download gff for BO16078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24940887..24941054 352..519 98 <- Minus
2R 24941122..24941441 32..351 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:02 Download gff for BO16078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20828410..20828577 352..519 98 <- Minus
arm_2R 20828645..20828964 32..351 100 <- Minus

BO16078.pep Sequence

Translation from 16 to 535

> BO16078.pep
MGQAKKVSSALSKLFVYGALKYGQPSNSILASSGNGFAKFWCKATTTQKL
PLVIATRYNIPFLLNKPGVGYYVTGEIYEVDDRMLNSLDNLEDCEEIYTR
EMHDMNIGVGEGTVPCWVYLLQKYPENLLSLRYLSSYENSTTHPYIMRHR
RTHKHPAQDDLTYEAQNASFLDH

BO16078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-PA 167 CG2803-PA 1..167 1..167 893 100 Plus
Tina-1-PB 84 CG2803-PB 1..84 84..167 462 100 Plus
CG2811-PA 157 CG2811-PA 2..157 4..163 336 43.8 Plus
CG2811-PB 157 CG2811-PB 2..141 4..145 320 44.4 Plus
CG2811-PC 151 CG2811-PC 3..135 12..145 319 44.8 Plus