Clone Sequence Records
BO16079.3prime Sequence
614 bp (614 high quality bases) assembled on 2006-06-16
> BO16079.3prime
ATGGTCTAGAAAGCTTGCGTAGTGGCCCGCATAGGGACTCGCATAGTGGC
CGTAGTGGCCGCTGTACTGATCATACTGTGGGATGTACTCGTACTGCTGG
CCCTGGTTGTAGTAGCCATCATCGTAGTCGTAGTGAATGGGTGCAGCTGC
CGCCGGAGCATAGTGCTTGGCCACATAAGGCGCCGGGGAGGCCACCACCA
GAGGAGCGTGGGCCACTGGAGCCACGTGCTTCACTACCTGCGGCTCGTAG
TGGGTCAGGACGGGCTTGTGGGCCACAATGGGACTGGCCACCACAGCCTG
GGCGTGCACAGTGGGTCCCGACTTGGTCACCACGGCATTGAAGCCGTGAA
TGGAGTCCGCCGTGTAGTCCACAGTGCGAATGGAGCCATCGGGCTCAACC
AGAGAGTACTGACCCTTGACCACATCTCCATCTCGCGTCTCGTGCTGTGA
CTTCACATCTCCTGTACTGTGGTCAGCCACACCGTAGTTAAAGGCATATT
TTGGATGATCATAGTAATCCAGGGCATATCCCGGTCGCGCCACAGCAACA
CTGGCGAAGAGAGCCAACGAAAGGATAACGAAGCACACGAAGTTTGCCAT
GTCGACTGATAACT
BO16079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13935-PA | 585 | CG13935-RA | 1..582 | 600..19 | 2910 | 100 | Minus |
CG7076-PA | 489 | CG7076-RA | 343..401 | 420..362 | 145 | 89.8 | Minus |
CG9299-PA | 3729 | CG9299-RA | 3561..3612 | 436..385 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-RC | 926 | CG13935-RC | 141..722 | 600..19 | 2910 | 100 | Minus |
Cpr62Bb-RB | 992 | CG13935-RB | 207..788 | 600..19 | 2910 | 100 | Minus |
Cpr62Bb-RA | 904 | CG13935-RA | 119..700 | 600..19 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1834289..1834529 | 174..414 | 1205 | 100 | Plus |
3L | 28110227 | 3L | 1832840..1832995 | 19..174 | 780 | 100 | Plus |
3L | 28110227 | 3L | 1834581..1834683 | 408..510 | 500 | 99 | Plus |
3L | 28110227 | 3L | 1834868..1834958 | 510..600 | 455 | 100 | Plus |
3L | 28110227 | 3L | 8337917..8338067 | 505..355 | 320 | 80.8 | Minus |
3L | 28110227 | 3L | 1840981..1841166 | 304..489 | 255 | 75.8 | Plus |
3R | 32079331 | 3R | 19598130..19598256 | 329..455 | 230 | 78.7 | Plus |
2L | 23513712 | 2L | 11945262..11945344 | 441..359 | 205 | 83.1 | Minus |
3L | 28110227 | 3L | 19537245..19537296 | 436..385 | 185 | 90.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 14:53:41 has no hits.
BO16079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:57 Download gff for
BO16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13935-PA | 1..585 | 18..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:56:05 Download gff for
BO16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..700 | 19..600 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:25:28 Download gff for
BO16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..700 | 19..600 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:25:28 Download gff for
BO16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1832840..1832994 | 19..173 | 100 | <- | Plus |
3L | 1834289..1834528 | 174..413 | 100 | <- | Plus |
3L | 1834587..1834683 | 414..510 | 100 | <- | Plus |
3L | 1834869..1834958 | 511..600 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:56:05 Download gff for
BO16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1832840..1832994 | 19..173 | 100 | <- | Plus |
arm_3L | 1834289..1834528 | 174..413 | 100 | <- | Plus |
arm_3L | 1834587..1834683 | 414..510 | 100 | <- | Plus |
arm_3L | 1834869..1834958 | 511..600 | 100 | | Plus |
BO16079.5prime Sequence
614 bp (609 high quality bases) assembled on 2006-06-16
> BO16079.5prime
GAAGTTATCAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGT
TGGCTCTCTTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGAT
TACTATGATCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAG
TACAGGAGATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCA
AGGGTCAGTACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGAC
TACACGGCGGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGG
ACCCACTGTGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACA
AGCCCGTCCTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCA
GTGGCCCACGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAA
GCACTATGCTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATG
GCTACTACAACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAG
TACAGCGGCCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACGC
AAGCTTTCTAGACC
BO16079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13935-PA | 585 | CG13935-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
CG7076-PA | 489 | CG7076-RA | 343..401 | 197..255 | 145 | 89.8 | Plus |
CG9299-PA | 3729 | CG9299-RA | 3561..3612 | 181..232 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-RC | 926 | CG13935-RC | 141..722 | 17..598 | 2910 | 100 | Plus |
Cpr62Bb-RB | 992 | CG13935-RB | 207..788 | 17..598 | 2910 | 100 | Plus |
Cpr62Bb-RA | 904 | CG13935-RA | 119..700 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1834289..1834529 | 443..203 | 1205 | 100 | Minus |
3L | 28110227 | 3L | 1832840..1832995 | 598..443 | 780 | 100 | Minus |
3L | 28110227 | 3L | 1834581..1834683 | 209..107 | 500 | 99 | Minus |
3L | 28110227 | 3L | 1834868..1834958 | 107..17 | 455 | 100 | Minus |
3L | 28110227 | 3L | 8337917..8338067 | 112..262 | 320 | 80.8 | Plus |
3L | 28110227 | 3L | 1840981..1841166 | 313..128 | 255 | 75.8 | Minus |
3R | 32079331 | 3R | 19598130..19598256 | 288..162 | 230 | 78.7 | Minus |
2L | 23513712 | 2L | 11945262..11945344 | 176..258 | 205 | 83.1 | Plus |
3L | 28110227 | 3L | 19537245..19537296 | 181..232 | 185 | 90.4 | Plus |
Blast to na_te.dros performed on 2015-02-02 14:53:53 has no hits.
BO16079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:58 Download gff for
BO16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13935-PA | 1..585 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:56:07 Download gff for
BO16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..700 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:25:29 Download gff for
BO16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..700 | 17..598 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:25:29 Download gff for
BO16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1832840..1832994 | 444..598 | 100 | <- | Minus |
3L | 1834289..1834528 | 204..443 | 100 | <- | Minus |
3L | 1834587..1834683 | 107..203 | 100 | <- | Minus |
3L | 1834869..1834958 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:56:07 Download gff for
BO16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1832840..1832994 | 444..598 | 100 | <- | Minus |
arm_3L | 1834289..1834528 | 204..443 | 100 | <- | Minus |
arm_3L | 1834587..1834683 | 107..203 | 100 | <- | Minus |
arm_3L | 1834869..1834958 | 17..106 | 100 | | Minus |
BO16079.complete Sequence
616 bp assembled on 2008-08-15
GenBank Submission: FJ633710
> BO16079.complete
GAAGTTATCAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGT
TGGCTCTCTTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGAT
TACTATGATCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAG
TACAGGAGATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCA
AGGGTCAGTACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGAC
TACACGGCGGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGG
ACCCACTGTGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACA
AGCCCGTCCTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCA
GTGGCCCACGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAA
GCACTATGCTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATG
GCTACTACAACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAG
TACAGCGGCCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACGC
AAGCTTTCTAGACCAT
BO16079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-RC | 585 | CG13935-PC | 1..582 | 17..598 | 2910 | 100 | Plus |
Cpr62Bb-RB | 585 | CG13935-PB | 1..582 | 17..598 | 2910 | 100 | Plus |
Cpr62Bb-RA | 585 | CG13935-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-RC | 926 | CG13935-RC | 141..722 | 17..598 | 2910 | 100 | Plus |
Cpr62Bb-RB | 992 | CG13935-RB | 207..788 | 17..598 | 2910 | 100 | Plus |
Cpr62Bb-RA | 904 | CG13935-RA | 119..700 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1834289..1834529 | 443..203 | 1205 | 100 | Minus |
3L | 28110227 | 3L | 1832840..1832995 | 598..443 | 780 | 100 | Minus |
3L | 28110227 | 3L | 1834581..1834683 | 209..107 | 500 | 99 | Minus |
3L | 28110227 | 3L | 1834868..1834958 | 107..17 | 455 | 100 | Minus |
3L | 28110227 | 3L | 8337917..8338067 | 112..262 | 320 | 80.8 | Plus |
3L | 28110227 | 3L | 1840981..1841166 | 313..128 | 255 | 75.8 | Minus |
3R | 32079331 | 3R | 19598130..19598256 | 288..162 | 230 | 78.7 | Minus |
2L | 23513712 | 2L | 11945262..11945344 | 176..258 | 205 | 83.1 | Plus |
3L | 28110227 | 3L | 19537245..19537296 | 181..232 | 185 | 90.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:42:45 has no hits.
BO16079.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:06 Download gff for
BO16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RB | 209..790 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:36 Download gff for
BO16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..700 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:32 Download gff for
BO16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RB | 209..790 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:49 Download gff for
BO16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..700 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:49 Download gff for
BO16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1832838..1832994 | 444..600 | 98 | <- | Minus |
3L | 1834289..1834528 | 204..443 | 100 | <- | Minus |
3L | 1834587..1834683 | 107..203 | 100 | <- | Minus |
3L | 1834869..1834958 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:36 Download gff for
BO16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1832838..1832994 | 444..600 | 98 | <- | Minus |
arm_3L | 1834289..1834528 | 204..443 | 100 | <- | Minus |
arm_3L | 1834587..1834683 | 107..203 | 100 | <- | Minus |
arm_3L | 1834869..1834958 | 17..106 | 100 | | Minus |
BO16079.pep Sequence
Translation from 16 to 616
> BO16079.pep
MANFVCFVILSLALFASVAVARPGYALDYYDHPKYAFNYGVADHSTGDVK
SQHETRDGDVVKGQYSLVEPDGSIRTVDYTADSIHGFNAVVTKSGPTVHA
QAVVASPIVAHKPVLTHYEPQVVKHVAPVAHAPLVVASPAPYVAKHYAPA
AAAPIHYDYDDGYYNQGQQYEYIPQYDQYSGHYGHYASPYAGHYASFLDH
BO16079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-PC | 194 | CG13935-PC | 1..194 | 1..194 | 1049 | 100 | Plus |
Cpr62Bb-PB | 194 | CG13935-PB | 1..194 | 1..194 | 1049 | 100 | Plus |
Cpr62Bb-PA | 194 | CG13935-PA | 1..194 | 1..194 | 1049 | 100 | Plus |
Cpr62Bc-PB | 180 | CG1919-PB | 6..180 | 3..194 | 355 | 42.6 | Plus |
Cpr62Bc-PA | 180 | CG1919-PA | 6..180 | 3..194 | 355 | 42.6 | Plus |