Clone BO16079 Report

Search the DGRC for BO16079

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCpr62Bb-RA
Protein status:BO16079.pep: Imported from assembly
Sequenced Size:616

Clone Sequence Records

BO16079.3prime Sequence

614 bp (614 high quality bases) assembled on 2006-06-16

> BO16079.3prime
ATGGTCTAGAAAGCTTGCGTAGTGGCCCGCATAGGGACTCGCATAGTGGC
CGTAGTGGCCGCTGTACTGATCATACTGTGGGATGTACTCGTACTGCTGG
CCCTGGTTGTAGTAGCCATCATCGTAGTCGTAGTGAATGGGTGCAGCTGC
CGCCGGAGCATAGTGCTTGGCCACATAAGGCGCCGGGGAGGCCACCACCA
GAGGAGCGTGGGCCACTGGAGCCACGTGCTTCACTACCTGCGGCTCGTAG
TGGGTCAGGACGGGCTTGTGGGCCACAATGGGACTGGCCACCACAGCCTG
GGCGTGCACAGTGGGTCCCGACTTGGTCACCACGGCATTGAAGCCGTGAA
TGGAGTCCGCCGTGTAGTCCACAGTGCGAATGGAGCCATCGGGCTCAACC
AGAGAGTACTGACCCTTGACCACATCTCCATCTCGCGTCTCGTGCTGTGA
CTTCACATCTCCTGTACTGTGGTCAGCCACACCGTAGTTAAAGGCATATT
TTGGATGATCATAGTAATCCAGGGCATATCCCGGTCGCGCCACAGCAACA
CTGGCGAAGAGAGCCAACGAAAGGATAACGAAGCACACGAAGTTTGCCAT
GTCGACTGATAACT

BO16079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13935-PA 585 CG13935-RA 1..582 600..19 2910 100 Minus
CG7076-PA 489 CG7076-RA 343..401 420..362 145 89.8 Minus
CG9299-PA 3729 CG9299-RA 3561..3612 436..385 135 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-RC 926 CG13935-RC 141..722 600..19 2910 100 Minus
Cpr62Bb-RB 992 CG13935-RB 207..788 600..19 2910 100 Minus
Cpr62Bb-RA 904 CG13935-RA 119..700 600..19 2910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1834289..1834529 174..414 1205 100 Plus
3L 28110227 3L 1832840..1832995 19..174 780 100 Plus
3L 28110227 3L 1834581..1834683 408..510 500 99 Plus
3L 28110227 3L 1834868..1834958 510..600 455 100 Plus
3L 28110227 3L 8337917..8338067 505..355 320 80.8 Minus
3L 28110227 3L 1840981..1841166 304..489 255 75.8 Plus
3R 32079331 3R 19598130..19598256 329..455 230 78.7 Plus
2L 23513712 2L 11945262..11945344 441..359 205 83.1 Minus
3L 28110227 3L 19537245..19537296 436..385 185 90.4 Minus
Blast to na_te.dros performed on 2015-02-02 14:53:41 has no hits.

BO16079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:57 Download gff for BO16079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13935-PA 1..585 18..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:56:05 Download gff for BO16079.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..700 19..600 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:25:28 Download gff for BO16079.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..700 19..600 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:25:28 Download gff for BO16079.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1832840..1832994 19..173 100 <- Plus
3L 1834289..1834528 174..413 100 <- Plus
3L 1834587..1834683 414..510 100 <- Plus
3L 1834869..1834958 511..600 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:56:05 Download gff for BO16079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1832840..1832994 19..173 100 <- Plus
arm_3L 1834289..1834528 174..413 100 <- Plus
arm_3L 1834587..1834683 414..510 100 <- Plus
arm_3L 1834869..1834958 511..600 100   Plus

BO16079.5prime Sequence

614 bp (609 high quality bases) assembled on 2006-06-16

> BO16079.5prime
GAAGTTATCAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGT
TGGCTCTCTTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGAT
TACTATGATCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAG
TACAGGAGATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCA
AGGGTCAGTACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGAC
TACACGGCGGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGG
ACCCACTGTGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACA
AGCCCGTCCTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCA
GTGGCCCACGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAA
GCACTATGCTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATG
GCTACTACAACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAG
TACAGCGGCCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACGC
AAGCTTTCTAGACC

BO16079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13935-PA 585 CG13935-RA 1..582 17..598 2910 100 Plus
CG7076-PA 489 CG7076-RA 343..401 197..255 145 89.8 Plus
CG9299-PA 3729 CG9299-RA 3561..3612 181..232 135 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-RC 926 CG13935-RC 141..722 17..598 2910 100 Plus
Cpr62Bb-RB 992 CG13935-RB 207..788 17..598 2910 100 Plus
Cpr62Bb-RA 904 CG13935-RA 119..700 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1834289..1834529 443..203 1205 100 Minus
3L 28110227 3L 1832840..1832995 598..443 780 100 Minus
3L 28110227 3L 1834581..1834683 209..107 500 99 Minus
3L 28110227 3L 1834868..1834958 107..17 455 100 Minus
3L 28110227 3L 8337917..8338067 112..262 320 80.8 Plus
3L 28110227 3L 1840981..1841166 313..128 255 75.8 Minus
3R 32079331 3R 19598130..19598256 288..162 230 78.7 Minus
2L 23513712 2L 11945262..11945344 176..258 205 83.1 Plus
3L 28110227 3L 19537245..19537296 181..232 185 90.4 Plus
Blast to na_te.dros performed on 2015-02-02 14:53:53 has no hits.

BO16079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:44:58 Download gff for BO16079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13935-PA 1..585 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:56:07 Download gff for BO16079.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..700 17..598 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 15:25:29 Download gff for BO16079.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..700 17..598 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 15:25:29 Download gff for BO16079.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1832840..1832994 444..598 100 <- Minus
3L 1834289..1834528 204..443 100 <- Minus
3L 1834587..1834683 107..203 100 <- Minus
3L 1834869..1834958 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:56:07 Download gff for BO16079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1832840..1832994 444..598 100 <- Minus
arm_3L 1834289..1834528 204..443 100 <- Minus
arm_3L 1834587..1834683 107..203 100 <- Minus
arm_3L 1834869..1834958 17..106 100   Minus

BO16079.complete Sequence

616 bp assembled on 2008-08-15

GenBank Submission: FJ633710

> BO16079.complete
GAAGTTATCAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGT
TGGCTCTCTTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGAT
TACTATGATCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAG
TACAGGAGATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCA
AGGGTCAGTACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGAC
TACACGGCGGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGG
ACCCACTGTGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACA
AGCCCGTCCTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCA
GTGGCCCACGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAA
GCACTATGCTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATG
GCTACTACAACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAG
TACAGCGGCCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACGC
AAGCTTTCTAGACCAT

BO16079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-RC 585 CG13935-PC 1..582 17..598 2910 100 Plus
Cpr62Bb-RB 585 CG13935-PB 1..582 17..598 2910 100 Plus
Cpr62Bb-RA 585 CG13935-PA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-RC 926 CG13935-RC 141..722 17..598 2910 100 Plus
Cpr62Bb-RB 992 CG13935-RB 207..788 17..598 2910 100 Plus
Cpr62Bb-RA 904 CG13935-RA 119..700 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1834289..1834529 443..203 1205 100 Minus
3L 28110227 3L 1832840..1832995 598..443 780 100 Minus
3L 28110227 3L 1834581..1834683 209..107 500 99 Minus
3L 28110227 3L 1834868..1834958 107..17 455 100 Minus
3L 28110227 3L 8337917..8338067 112..262 320 80.8 Plus
3L 28110227 3L 1840981..1841166 313..128 255 75.8 Minus
3R 32079331 3R 19598130..19598256 288..162 230 78.7 Minus
2L 23513712 2L 11945262..11945344 176..258 205 83.1 Plus
3L 28110227 3L 19537245..19537296 181..232 185 90.4 Plus
Blast to na_te.dros performed on 2014-11-27 20:42:45 has no hits.

BO16079.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:06 Download gff for BO16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RB 209..790 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:36 Download gff for BO16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..700 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:32 Download gff for BO16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RB 209..790 17..600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:49 Download gff for BO16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..700 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:49 Download gff for BO16079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1832838..1832994 444..600 98 <- Minus
3L 1834289..1834528 204..443 100 <- Minus
3L 1834587..1834683 107..203 100 <- Minus
3L 1834869..1834958 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:36 Download gff for BO16079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1832838..1832994 444..600 98 <- Minus
arm_3L 1834289..1834528 204..443 100 <- Minus
arm_3L 1834587..1834683 107..203 100 <- Minus
arm_3L 1834869..1834958 17..106 100   Minus

BO16079.pep Sequence

Translation from 16 to 616

> BO16079.pep
MANFVCFVILSLALFASVAVARPGYALDYYDHPKYAFNYGVADHSTGDVK
SQHETRDGDVVKGQYSLVEPDGSIRTVDYTADSIHGFNAVVTKSGPTVHA
QAVVASPIVAHKPVLTHYEPQVVKHVAPVAHAPLVVASPAPYVAKHYAPA
AAAPIHYDYDDGYYNQGQQYEYIPQYDQYSGHYGHYASPYAGHYASFLDH

BO16079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-PC 194 CG13935-PC 1..194 1..194 1049 100 Plus
Cpr62Bb-PB 194 CG13935-PB 1..194 1..194 1049 100 Plus
Cpr62Bb-PA 194 CG13935-PA 1..194 1..194 1049 100 Plus
Cpr62Bc-PB 180 CG1919-PB 6..180 3..194 355 42.6 Plus
Cpr62Bc-PA 180 CG1919-PA 6..180 3..194 355 42.6 Plus