Clone Sequence Records
BO16082.3prime Sequence
722 bp (640 high quality bases) assembled on 2006-06-16
> BO16082.3prime
ATGGTCTAGAAAGCTTGCATGATCTGCCTGTTCATCGTCCTCCTCCGAGG
AAGTTTCTTTCTCGATCGCGTCAGACATGCGCTCTTGCAACTTCTGCTGT
AGGTTGGAGTCCTTGACCAGGTGCGCTGGATGGATGTAGGACCTGTTGGG
ACAGCCGAGCACTGGGCATCGAATACCAATGTTGTCCGTGATGATCAGCA
TCACCGAGTCGCGGTCGTAGATGTGGCCGCACTTTTTGTTGCGCACGGGG
TTCTTTATCAAGGCTTTGGACCAGGGATCGTAGAGCGAGAAGACCTCGCC
GCCGGTGGCTTCCATGATAAGGTCCTCGTCATGGGCGGCGCTATTCGCTT
GACCATTTGTTTCCGCACCCGCCTGGGGAGCTGCCGCTTTCATGAAGTTT
TTGAACTCGGCTGAGTTCTTGACATCGATGCGCTTCTGCTCCACCGCTTC
GGAGCGCTCCTTCCAGACTTCCTCGAACTTCTCGATGGTGTTGCTAGAGT
TTTTGGCATGCTTCATAGCCTTGCTGAGCAATTGGTGCTTGCTCTTCATT
CGGATGAGATTCTCGGCGAGATCCACGTTCTGGTCCAACAACTTCTGGAT
CTCCCTGCCCTCACTGAAATCGGACACGACTTCTGCCATTTCTTTGAAGA
ACTTTTGGTTTTTCAATAAAGTGGTAAGTGCCGAATCCCCCTGGGAATTG
AAGTCCATGTCGACTGATAACT
BO16082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15645-PA | 693 | CG15645-RA | 1..690 | 708..19 | 3325 | 99.2 | Minus |
| CG15645-PB | 534 | CG15645-RB | 1..531 | 549..19 | 2655 | 100 | Minus |
| CG13732-PA | 702 | CG13732-RA | 378..539 | 352..191 | 435 | 90.7 | Minus |
| CG13732-PA | 702 | CG13732-RA | 181..305 | 540..416 | 350 | 91.2 | Minus |
| CG32584-PA | 366 | CG32584-RA | 95..189 | 506..412 | 325 | 93.6 | Minus |
| CG32584-PB | 549 | CG32584-RB | 95..189 | 506..412 | 325 | 93.6 | Minus |
| CG32584-PA | 366 | CG32584-RA | 313..355 | 251..209 | 165 | 95.3 | Minus |
| CG32584-PB | 549 | CG32584-RB | 302..374 | 281..209 | 165 | 89 | Minus |
| CG13732-PA | 702 | CG13732-RA | 22..95 | 687..614 | 145 | 87.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 1141 | CG15645-RD | 283..972 | 708..19 | 3375 | 99.3 | Minus |
| cerv-RA | 968 | CG15645-RA | 110..799 | 708..19 | 3375 | 99.3 | Minus |
| cerv-RC | 952 | CG15645-RC | 110..783 | 708..19 | 3130 | 97.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15577155..15577767 | 19..631 | 3050 | 99.8 | Plus |
| 3L | 28110227 | 3L | 17479362..17480060 | 708..31 | 1490 | 81.5 | Minus |
| X | 23542271 | X | 15575042..15575511 | 19..506 | 935 | 79.9 | Plus |
| X | 23542271 | X | 15555348..15555675 | 19..346 | 785 | 82.6 | Plus |
| X | 23542271 | X | 15555720..15555814 | 412..506 | 385 | 93.7 | Plus |
| X | 23542271 | X | 15577811..15577889 | 630..708 | 335 | 94.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 06:40:33 has no hits.
BO16082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:01 Download gff for
BO16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15645-PA | 1..693 | 15..708 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:12:39 Download gff for
BO16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..804 | 11..708 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:43:59 Download gff for
BO16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..804 | 11..708 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:43:59 Download gff for
BO16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15577150..15577765 | 11..629 | 99 | <- | Plus |
| X | 15577811..15577889 | 630..708 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:12:39 Download gff for
BO16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15471844..15471922 | 630..708 | 94 | | Plus |
| arm_X | 15471183..15471798 | 11..629 | 99 | <- | Plus |
BO16082.5prime Sequence
681 bp (661 high quality bases) assembled on 2006-06-16
> BO16082.5prime
GAAGTTATCAGTCGACATGGACTTCAATTACCATGTGGATTCGGCACTTA
CCACTTTATTGGAAAACCAAAAGTTCTTCAAAGAAATGGCAGAAGTCGTG
TCCGATTTCAGTGATGGCAGGGAGATCCAGAAGTTGTTGGACCAGAACGT
GGATCTCGCCGAGAATCTCATCCGAATGAAGAGCAAGCACCAATTGCTCA
GCAAGGCTATGAAGCATGCCAAAAACTCTAGCAACACCATCGAGAAGTTC
GAGGAAGTCTGGAAGGAGCGCTCCGAAGCGGTGGAGCAGAAGCGCATCGA
TGTCAAGAACTCAGCCGAGTTCAAAAACTTCATGAAAGCGGCAGCTCCCC
AGGCGGGTGCGGAAACAAATGGTCAAGCGAATAGCGCCGCCCATGACGAG
GACCTTATCATGGAAGCCACCGGCGGCGAGGTCTTCTCGCTCTACGATCC
CTGGTCCAAAGCCTTGATAAAGAACCCCGTGCGCAACAAAAAGTGCGGCC
ACATCTACGACCGCGACTCGGTGATGCTGATCATCACGGACAACATTGGT
ATTCGATGCCCAGTGCTCGGCTGTCCCAACAGGTCCTACATCCATCCAGC
GCACCTGGTCAAGGACTCCAACCTACAGCAGAAGTTGCAAGAGCGCATGT
CTGACGCGATCGAAAAAGAAACTTCCTCGGA
BO16082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15645-PA | 693 | CG15645-RA | 1..665 | 17..681 | 3300 | 99.8 | Plus |
| CG15645-PB | 534 | CG15645-RB | 1..506 | 176..681 | 2505 | 99.8 | Plus |
| CG13732-PA | 702 | CG13732-RA | 378..539 | 373..534 | 435 | 90.7 | Plus |
| CG13732-PA | 702 | CG13732-RA | 181..305 | 185..309 | 350 | 91.2 | Plus |
| CG32584-PA | 366 | CG32584-RA | 95..189 | 219..313 | 325 | 93.6 | Plus |
| CG32584-PB | 549 | CG32584-RB | 95..189 | 219..313 | 325 | 93.6 | Plus |
| CG13732-PA | 702 | CG13732-RA | 1..120 | 17..136 | 200 | 86.6 | Plus |
| CG32584-PA | 366 | CG32584-RA | 313..355 | 474..516 | 165 | 95.3 | Plus |
| CG32584-PB | 549 | CG32584-RB | 302..374 | 444..516 | 165 | 89 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 1141 | CG15645-RD | 283..947 | 17..681 | 3310 | 99.8 | Plus |
| cerv-RA | 968 | CG15645-RA | 110..774 | 17..681 | 3310 | 99.8 | Plus |
| cerv-RC | 952 | CG15645-RC | 110..758 | 17..681 | 3060 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15577180..15577767 | 681..94 | 2925 | 99.8 | Minus |
| 3L | 28110227 | 3L | 17479362..17480047 | 17..681 | 1485 | 81.8 | Plus |
| X | 23542271 | X | 15575067..15575511 | 681..219 | 855 | 79.5 | Minus |
| X | 23542271 | X | 15555373..15555675 | 681..379 | 705 | 82.2 | Minus |
| X | 23542271 | X | 15577811..15577889 | 95..17 | 395 | 100 | Minus |
| X | 23542271 | X | 15555720..15555814 | 313..219 | 385 | 93.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:58:38 has no hits.
BO16082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:02 Download gff for
BO16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15645-PA | 1..664 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:21 Download gff for
BO16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..773 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:54 Download gff for
BO16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..773 | 17..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:54 Download gff for
BO16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15577181..15577765 | 96..680 | 99 | <- | Minus |
| X | 15577811..15577889 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:21 Download gff for
BO16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15471214..15471798 | 96..680 | 99 | <- | Minus |
| arm_X | 15471844..15471922 | 17..95 | 100 | | Minus |
BO16082.complete Sequence
724 bp assembled on 2008-08-15
GenBank Submission: FJ633711
> BO16082.complete
GAAGTTATCAGTCGACATGGACTTCAATTACCATGTGGATTCGGCACTTA
CCACTTTATTGGAAAACCAAAAGTTCTTCAAAGAAATGGCAGAAGTCGTG
TCCGATTTCAGTGATGGCAGGGAGATCCAGAAGTTGTTGGACCAGAACGT
GGATCTCGCCGAGAATCTCATCCGAATGAAGAGCAAGCACCAATTGCTCA
GCAAGGCTATGAAGCATGCCAAAAACTCTAGCAACACCATCGAGAAGTTC
GAGGAAGTCTGGAAGGAGCGCTCCGAAGCGGTGGAGCAGAAGCGCATCGA
TGTCAAGAACTCAGCCGAGTTCAAAAACTTCATGAAAGCGGCAGCTCCCC
AGGCGGGTGCGGAAACAAATGGTCAAGCGAATAGCGCCGCCCATGACGAG
GACCTTATCATGGAAGCCACCGGCGGCGAGGTCTTCTCGCTCTACGATCC
CTGGTCCAAAGCCTTGATAAAGAACCCCGTGCGCAACAAAAAGTGCGGCC
ACATCTACGACCGCGACTCGGTGATGCTGATCATCACGGACAACATTGGT
ATTCGATGCCCAGTGCTCGGCTGTCCCAACAGGTCCTACATCCATCCAGC
GCACCTGGTCAAGGACTCCAACCTACAGCAGAAGTTGCAAGAGCGCATGT
CTGACGCGATCGAGAAAGAAACTTCCTCGGAGGAGGACGATGAACAGGCA
GATCATGCAAGCTTTCTAGACCAT
BO16082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 693 | CG15645-PD | 1..690 | 17..706 | 3450 | 100 | Plus |
| cerv-RA | 693 | CG15645-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
| cerv-RC | 534 | CG15645-PC | 1..531 | 176..706 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 1141 | CG15645-RD | 283..972 | 17..706 | 3450 | 100 | Plus |
| cerv-RA | 968 | CG15645-RA | 110..799 | 17..706 | 3450 | 100 | Plus |
| cerv-RC | 952 | CG15645-RC | 110..783 | 17..706 | 3175 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15577155..15577767 | 706..94 | 3065 | 100 | Minus |
| 3L | 28110227 | 3L | 17479362..17480060 | 17..694 | 1550 | 82.1 | Plus |
| X | 23542271 | X | 15575042..15575511 | 706..219 | 935 | 79.9 | Minus |
| X | 23542271 | X | 15555348..15555675 | 706..379 | 785 | 82.6 | Minus |
| X | 23542271 | X | 15577811..15577889 | 95..17 | 395 | 100 | Minus |
| X | 23542271 | X | 15555720..15555814 | 313..219 | 385 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:33:50 has no hits.
BO16082.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:02 Download gff for
BO16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 96..790 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:13 Download gff for
BO16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..799 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:10 Download gff for
BO16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15645-RA | 96..785 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:29 Download gff for
BO16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..799 | 17..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:29 Download gff for
BO16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15577153..15577765 | 96..708 | 99 | <- | Minus |
| X | 15577811..15577889 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:13 Download gff for
BO16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15471186..15471798 | 96..708 | 99 | <- | Minus |
| arm_X | 15471844..15471922 | 17..95 | 100 | | Minus |
BO16082.pep Sequence
Translation from 16 to 724
> BO16082.pep
MDFNYHVDSALTTLLENQKFFKEMAEVVSDFSDGREIQKLLDQNVDLAEN
LIRMKSKHQLLSKAMKHAKNSSNTIEKFEEVWKERSEAVEQKRIDVKNSA
EFKNFMKAAAPQAGAETNGQANSAAHDEDLIMEATGGEVFSLYDPWSKAL
IKNPVRNKKCGHIYDRDSVMLIITDNIGIRCPVLGCPNRSYIHPAHLVKD
SNLQQKLQERMSDAIEKETSSEEDDEQADHASFLDH
BO16082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-PD | 230 | CG15645-PD | 1..230 | 1..230 | 1187 | 100 | Plus |
| cerv-PA | 230 | CG15645-PA | 1..230 | 1..230 | 1187 | 100 | Plus |
| cerv-PC | 177 | CG15645-PC | 1..177 | 54..230 | 921 | 100 | Plus |
| qjt-PB | 233 | CG13732-PB | 1..233 | 1..226 | 805 | 69.1 | Plus |
| qjt-PA | 233 | CG13732-PA | 1..233 | 1..226 | 805 | 69.1 | Plus |
