Clone BO16084 Report

Search the DGRC for BO16084

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG2911-RA
Protein status:BO16084.pep: Imported from assembly
Sequenced Size:583

Clone Sequence Records

BO16084.5prime Sequence

581 bp (581 high quality bases) assembled on 2006-06-16

> BO16084.5prime
GAAGTTATCAGTCGACATGCCCGACTTCTATGAACTCTTGAATGTGCCAT
CCACGGCCAGTTTCGATGAGATCAAGTGCAGCTACAAACAATTGATACTA
CAATGTCATCCCGACAAATTGCGACAGCTCGATGACCCAAATCCGGGATC
GGAGGCCCAGAACAGTGACTTCAATGCGATAAACGCGGCGTGGAACACGC
TGAAAGATCCCATTAGGCGCAAGCACTACGACGCAGAACTGCTGCAGTCG
AAATTCCGGGCGCATAGCAACATCTACGCCACCGTTGTGTTGAGTGAAAT
GCAGCGGATCCAAGTGGAAATCGAAGAAGATGACGACGAGGCACCGGCAC
CTTCAGCTCCACCTCCCTGCCAAGCATCTGAATCAGAATCAGAATCCGAG
GCGAACAAAGGGCCGGCGACAATGTGGAGCTACGCGTACGACTGCCGATG
CGGCGGTCAGTATCTGTTCGATGGACCCGCAGACGATGATGAGTCACCCG
AAGTGATTGTGGAGTGCAACGAGTGCTCTTTAGTGATTATTGTGAAACAA
GCCGCAAGTTGTAAAGCAAGCTTTCTAGACC

BO16084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2911-PA 552 CG2911-RA 1..549 17..565 2720 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2911-RA 974 CG2911-RA 403..953 15..565 2740 99.8 Plus
CG2911-RB 921 CG2911-RB 352..900 17..565 2730 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5622140..5622688 565..17 2730 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 17:35:08 has no hits.

BO16084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:04 Download gff for BO16084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2911-PA 1..552 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:01:43 Download gff for BO16084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 403..958 15..570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:16 Download gff for BO16084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 403..958 15..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:16 Download gff for BO16084.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5622135..5622693 12..570 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:01:43 Download gff for BO16084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1447857..1448415 12..570 99   Minus

BO16084.complete Sequence

583 bp assembled on 2008-08-15

GenBank Submission: FJ633713

> BO16084.complete
GAAGTTATCAGTCGACATGCCCGACTTCTATGAACTCTTGAATGTGCCAT
CCACGGCCAGTTTCGATGAGATCAAGTGCAGCTACAAACAATTGATACTA
CAATGTCATCCCGACAAATTGCGACAGCTCGATGACCCAAATCCGGGATC
GGAGGCCCAGAACAGTGACTTCAATGCGATAAACGCGGCGTGGAACACGC
TGAAAGATCCCATTAGGCGCAAGCACTACGACGCAGAACTGCTGCAGTCG
AAATTCCGGGCGCATAGCAACATCTACGCCACCGTTGTGTTGAGTGAAAT
GCAGCGGATCCAAGTGGAAATCGAAGAAGATGACGACGAGGCACCGGCAC
CTTCAGCTCCACCTCCCTGCCAAGCATCTGAATCAGAATCAGAATCCGAG
GCGAACAAAGGGCCGGCGACAATGTGGAGCTACGCGTACGACTGCCGATG
CGGCGGTCAGTATCTGTTCGATGGACCCGCAGACGATGATGAGTCACCCG
AAGTGATTGTGGAGTGCAACGAGTGCTCTTTAGTGATTATTGTGAAACAA
GCCGCAAGTTGTAAAGCAAGCTTTCTAGACCAT

BO16084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2911-RB 552 CG2911-PB 1..549 17..565 2730 99.8 Plus
CG2911-RA 552 CG2911-PA 1..549 17..565 2730 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2911-RA 974 CG2911-RA 403..953 15..565 2740 99.8 Plus
CG2911-RB 921 CG2911-RB 352..900 17..565 2730 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5622140..5622688 565..17 2730 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 10:06:34 has no hits.

BO16084.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:10 Download gff for BO16084.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 403..958 15..570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:45 Download gff for BO16084.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 405..953 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:47 Download gff for BO16084.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 405..953 17..567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:14 Download gff for BO16084.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 405..953 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:14 Download gff for BO16084.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5622138..5622688 17..567 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:45 Download gff for BO16084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1447860..1448410 17..567 99   Minus

BO16084.pep Sequence

Translation from 16 to 583

> BO16084.pep
MPDFYELLNVPSTASFDEIKCSYKQLILQCHPDKLRQLDDPNPGSEAQNS
DFNAINAAWNTLKDPIRRKHYDAELLQSKFRAHSNIYATVVLSEMQRIQV
EIEEDDDEAPAPSAPPPCQASESESESEANKGPATMWSYAYDCRCGGQYL
FDGPADDDESPEVIVECNECSLVIIVKQAASCKASFLDH

BO16084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2911-PB 183 CG2911-PB 1..183 1..183 980 100 Plus
CG2911-PA 183 CG2911-PA 1..183 1..183 980 100 Plus