Clone Sequence Records
BO16084.5prime Sequence
581 bp (581 high quality bases) assembled on 2006-06-16
> BO16084.5prime
GAAGTTATCAGTCGACATGCCCGACTTCTATGAACTCTTGAATGTGCCAT
CCACGGCCAGTTTCGATGAGATCAAGTGCAGCTACAAACAATTGATACTA
CAATGTCATCCCGACAAATTGCGACAGCTCGATGACCCAAATCCGGGATC
GGAGGCCCAGAACAGTGACTTCAATGCGATAAACGCGGCGTGGAACACGC
TGAAAGATCCCATTAGGCGCAAGCACTACGACGCAGAACTGCTGCAGTCG
AAATTCCGGGCGCATAGCAACATCTACGCCACCGTTGTGTTGAGTGAAAT
GCAGCGGATCCAAGTGGAAATCGAAGAAGATGACGACGAGGCACCGGCAC
CTTCAGCTCCACCTCCCTGCCAAGCATCTGAATCAGAATCAGAATCCGAG
GCGAACAAAGGGCCGGCGACAATGTGGAGCTACGCGTACGACTGCCGATG
CGGCGGTCAGTATCTGTTCGATGGACCCGCAGACGATGATGAGTCACCCG
AAGTGATTGTGGAGTGCAACGAGTGCTCTTTAGTGATTATTGTGAAACAA
GCCGCAAGTTGTAAAGCAAGCTTTCTAGACC
BO16084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2911-PA | 552 | CG2911-RA | 1..549 | 17..565 | 2720 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2911-RA | 974 | CG2911-RA | 403..953 | 15..565 | 2740 | 99.8 | Plus |
CG2911-RB | 921 | CG2911-RB | 352..900 | 17..565 | 2730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5622140..5622688 | 565..17 | 2730 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:35:08 has no hits.
BO16084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:04 Download gff for
BO16084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2911-PA | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:01:43 Download gff for
BO16084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2911-RA | 403..958 | 15..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:16 Download gff for
BO16084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2911-RA | 403..958 | 15..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:16 Download gff for
BO16084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5622135..5622693 | 12..570 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:01:43 Download gff for
BO16084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1447857..1448415 | 12..570 | 99 | | Minus |
BO16084.complete Sequence
583 bp assembled on 2008-08-15
GenBank Submission: FJ633713
> BO16084.complete
GAAGTTATCAGTCGACATGCCCGACTTCTATGAACTCTTGAATGTGCCAT
CCACGGCCAGTTTCGATGAGATCAAGTGCAGCTACAAACAATTGATACTA
CAATGTCATCCCGACAAATTGCGACAGCTCGATGACCCAAATCCGGGATC
GGAGGCCCAGAACAGTGACTTCAATGCGATAAACGCGGCGTGGAACACGC
TGAAAGATCCCATTAGGCGCAAGCACTACGACGCAGAACTGCTGCAGTCG
AAATTCCGGGCGCATAGCAACATCTACGCCACCGTTGTGTTGAGTGAAAT
GCAGCGGATCCAAGTGGAAATCGAAGAAGATGACGACGAGGCACCGGCAC
CTTCAGCTCCACCTCCCTGCCAAGCATCTGAATCAGAATCAGAATCCGAG
GCGAACAAAGGGCCGGCGACAATGTGGAGCTACGCGTACGACTGCCGATG
CGGCGGTCAGTATCTGTTCGATGGACCCGCAGACGATGATGAGTCACCCG
AAGTGATTGTGGAGTGCAACGAGTGCTCTTTAGTGATTATTGTGAAACAA
GCCGCAAGTTGTAAAGCAAGCTTTCTAGACCAT
BO16084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2911-RB | 552 | CG2911-PB | 1..549 | 17..565 | 2730 | 99.8 | Plus |
CG2911-RA | 552 | CG2911-PA | 1..549 | 17..565 | 2730 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2911-RA | 974 | CG2911-RA | 403..953 | 15..565 | 2740 | 99.8 | Plus |
CG2911-RB | 921 | CG2911-RB | 352..900 | 17..565 | 2730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5622140..5622688 | 565..17 | 2730 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:06:34 has no hits.
BO16084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:10 Download gff for
BO16084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2911-RA | 403..958 | 15..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:45 Download gff for
BO16084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2911-RA | 405..953 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:47 Download gff for
BO16084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2911-RA | 405..953 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:14 Download gff for
BO16084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2911-RA | 405..953 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:14 Download gff for
BO16084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5622138..5622688 | 17..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:45 Download gff for
BO16084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1447860..1448410 | 17..567 | 99 | | Minus |
BO16084.pep Sequence
Translation from 16 to 583
> BO16084.pep
MPDFYELLNVPSTASFDEIKCSYKQLILQCHPDKLRQLDDPNPGSEAQNS
DFNAINAAWNTLKDPIRRKHYDAELLQSKFRAHSNIYATVVLSEMQRIQV
EIEEDDDEAPAPSAPPPCQASESESESEANKGPATMWSYAYDCRCGGQYL
FDGPADDDESPEVIVECNECSLVIIVKQAASCKASFLDH
BO16084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2911-PB | 183 | CG2911-PB | 1..183 | 1..183 | 980 | 100 | Plus |
CG2911-PA | 183 | CG2911-PA | 1..183 | 1..183 | 980 | 100 | Plus |