Clone BO16087 Report

Search the DGRC for BO16087

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG18609-RA
Protein status:BO16087.pep: Imported from assembly
Sequenced Size:823

Clone Sequence Records

BO16087.3prime Sequence

697 bp (693 high quality bases) assembled on 2006-06-16

> BO16087.3prime
ATGGTCTAGAAAGCTTGCCGATTGCTTTGCGTTGATTTTCGCCTTCGGAG
GTCTCAGATAGTTGTCGATATAGAATTTACCAAACAGATAAATGAACACA
ACGCCTTGCACCATATTTAGATAGAGAAGACCGCGTGGAACGCCACAATT
CGGTGAAAAGAATCGCACATAGATGGCATAACTGAGCAGCATGAAGAACT
GGCAGAGCTGTGTCAATGTTATATACTTCTTCCACCAGATATTGGCCCTC
ACTCCGGGATATTCTGAAGACAGAAAGTAGTAGAAATACATGACCGTGTG
CACCAAGGAGTTCAGCAGTCCAACGGCATTGACATGGCCTCCAGTTCCAT
AGTAACGGGTTAGGGCATAACTTCCAAAGGACATGAACACGTGGTGATAT
ATGTGCAGGAAGGTGATCTGCTTATAGCTCTTTCGCAGCACAAAGAACAC
CGTATCCATAAGATCGAGGACCTTGTTCAGCAGATATGCGGCATGCAATA
CTCGTTCCAATTGTTTGCGTTCATGGCCCTCGGGAAAGCTTTCTATGCAG
TGCAGATTGCAAATGCCCACGATGAAGAGATAATAAAAAACCATTCCGAA
GTAGAGACCATTGTATAGCACCTGAAATAGATTGTAGACCTTCAAGACCG
TTTTCAAATCATATGGTTTCCGGTTTCTCATAAAGATCTTGCCCAAT

BO16087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-PA 792 CG18609-RA 111..789 697..19 3395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-RA 989 CG18609-RA 162..840 697..19 3395 100 Minus
CG17821-RA 1073 CG17821-RA 616..711 477..382 180 79.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18742666..18743239 19..592 2870 100 Plus
2R 25286936 2R 18743299..18743406 590..697 540 100 Plus
2R 25286936 2R 18744168..18744263 382..477 180 79.2 Plus
Blast to na_te.dros performed on 2015-02-12 03:42:04 has no hits.

BO16087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:04 Download gff for BO16087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-PA 111..792 18..697 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:41:30 Download gff for BO16087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 162..847 10..697 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:03 Download gff for BO16087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 162..847 10..697 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:03 Download gff for BO16087.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18742659..18743238 10..591 99 <- Plus
2R 18743301..18743406 592..697 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:41:30 Download gff for BO16087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14630164..14630743 10..591 99 <- Plus
arm_2R 14630806..14630911 592..697 100   Plus

BO16087.5prime Sequence

797 bp (702 high quality bases) assembled on 2006-06-16

> BO16087.5prime
GAAGTTATCAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATC
CTAACCCAATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTG
ATAGCATATCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAA
CCGGAAACCATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTC
AGGTGCTATACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTC
ATCGTGGGCATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCA
TGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACA
AGGTCCTCGATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTAT
AAGCAGATCACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGG
AAGTTATGCCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCG
TTGGACTGCTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTT
CTGTCTTCAGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTA
TATAACATTGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCA
TCTATGTGCGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTC
TATCTAAATATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATT
CTATATCGACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAA

BO16087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-PA 792 CG18609-RA 1..781 17..797 3905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-RA 989 CG18609-RA 52..832 17..797 3905 100 Plus
CG17821-RA 1073 CG17821-RA 616..711 347..442 180 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18742674..18743239 797..232 2830 100 Minus
2R 25286936 2R 18743299..18743486 234..47 940 100 Minus
Blast to na_te.dros performed on 2015-02-11 08:24:04 has no hits.

BO16087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:05 Download gff for BO16087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-PA 1..779 17..795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:54:38 Download gff for BO16087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..830 17..795 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:53:42 Download gff for BO16087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..830 17..795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:53:42 Download gff for BO16087.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18742676..18743238 233..795 100 <- Minus
2R 18743301..18743485 48..232 100 <- Minus
2R 18743545..18743575 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:54:38 Download gff for BO16087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14630806..14630990 48..232 100 <- Minus
arm_2R 14630181..14630743 233..795 100 <- Minus
arm_2R 14631050..14631080 17..47 100   Minus

BO16087.complete Sequence

823 bp assembled on 2008-08-15

GenBank Submission: FJ633714

> BO16087.complete
GAAGTTATCAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATC
CTAACCCAATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTG
ATAGCATATCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAA
CCGGAAACCATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTC
AGGTGCTATACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTC
ATCGTGGGCATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCA
TGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACA
AGGTCCTCGATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTAT
AAGCAGATCACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGG
AAGTTATGCCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCG
TTGGACTGCTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTT
CTGTCTTCAGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTA
TATAACATTGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCA
TCTATGTGCGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTC
TATCTAAATATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATT
CTATATCGACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAAAGC
AATCGGCAAGCTTTCTAGACCAT

BO16087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-RA 792 CG18609-PA 1..789 17..805 3945 100 Plus
CG17821-RA 789 CG17821-PA 343..438 347..442 180 79.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-RA 989 CG18609-RA 52..840 17..805 3945 100 Plus
CG17821-RA 1073 CG17821-RA 616..711 347..442 180 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18742666..18743239 805..232 2870 100 Minus
2R 25286936 2R 18743299..18743486 234..47 940 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:49:59 has no hits.

BO16087.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:47 Download gff for BO16087.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 42..833 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:30 Download gff for BO16087.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..840 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:35 Download gff for BO16087.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 42..830 17..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:22 Download gff for BO16087.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..840 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:22 Download gff for BO16087.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18742662..18743238 233..807 99 <- Minus
2R 18743301..18743485 48..232 100 <- Minus
2R 18743545..18743575 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:30 Download gff for BO16087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14630167..14630743 233..807 99 <- Minus
arm_2R 14630806..14630990 48..232 100 <- Minus
arm_2R 14631050..14631080 17..47 100   Minus

BO16087.pep Sequence

Translation from 16 to 823

> BO16087.pep
MLRYLRIPQADPNPIPLAGSPWPITLILIAYLLFVLKLGKIFMRNRKPYD
LKTVLKVYNLFQVLYNGLYFGMVFYYLFIVGICNLHCIESFPEGHERKQL
ERVLHAAYLLNKVLDLMDTVFFVLRKSYKQITFLHIYHHVFMSFGSYALT
RYYGTGGHVNAVGLLNSLVHTVMYFYYFLSSEYPGVRANIWWKKYITLTQ
LCQFFMLLSYAIYVRFFSPNCGVPRGLLYLNMVQGVVFIYLFGKFYIDNY
LRPPKAKINAKQSASFLDH

BO16087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-PA 263 CG18609-PA 1..263 1..263 1406 100 Plus
CG16904-PA 262 CG16904-PA 8..260 8..261 628 48 Plus
CG17821-PA 262 CG17821-PA 14..256 10..252 587 44.4 Plus
CG8534-PA 265 CG8534-PA 14..252 11..251 582 46.9 Plus
eloF-PA 257 CG16905-PA 6..255 11..263 560 43.9 Plus