Clone Sequence Records
BO16087.3prime Sequence
697 bp (693 high quality bases) assembled on 2006-06-16
> BO16087.3prime
ATGGTCTAGAAAGCTTGCCGATTGCTTTGCGTTGATTTTCGCCTTCGGAG
GTCTCAGATAGTTGTCGATATAGAATTTACCAAACAGATAAATGAACACA
ACGCCTTGCACCATATTTAGATAGAGAAGACCGCGTGGAACGCCACAATT
CGGTGAAAAGAATCGCACATAGATGGCATAACTGAGCAGCATGAAGAACT
GGCAGAGCTGTGTCAATGTTATATACTTCTTCCACCAGATATTGGCCCTC
ACTCCGGGATATTCTGAAGACAGAAAGTAGTAGAAATACATGACCGTGTG
CACCAAGGAGTTCAGCAGTCCAACGGCATTGACATGGCCTCCAGTTCCAT
AGTAACGGGTTAGGGCATAACTTCCAAAGGACATGAACACGTGGTGATAT
ATGTGCAGGAAGGTGATCTGCTTATAGCTCTTTCGCAGCACAAAGAACAC
CGTATCCATAAGATCGAGGACCTTGTTCAGCAGATATGCGGCATGCAATA
CTCGTTCCAATTGTTTGCGTTCATGGCCCTCGGGAAAGCTTTCTATGCAG
TGCAGATTGCAAATGCCCACGATGAAGAGATAATAAAAAACCATTCCGAA
GTAGAGACCATTGTATAGCACCTGAAATAGATTGTAGACCTTCAAGACCG
TTTTCAAATCATATGGTTTCCGGTTTCTCATAAAGATCTTGCCCAAT
BO16087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-PA | 792 | CG18609-RA | 111..789 | 697..19 | 3395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-RA | 989 | CG18609-RA | 162..840 | 697..19 | 3395 | 100 | Minus |
CG17821-RA | 1073 | CG17821-RA | 616..711 | 477..382 | 180 | 79.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18742666..18743239 | 19..592 | 2870 | 100 | Plus |
2R | 25286936 | 2R | 18743299..18743406 | 590..697 | 540 | 100 | Plus |
2R | 25286936 | 2R | 18744168..18744263 | 382..477 | 180 | 79.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:42:04 has no hits.
BO16087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:04 Download gff for
BO16087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-PA | 111..792 | 18..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:41:30 Download gff for
BO16087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 162..847 | 10..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:03 Download gff for
BO16087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 162..847 | 10..697 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:03 Download gff for
BO16087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18742659..18743238 | 10..591 | 99 | <- | Plus |
2R | 18743301..18743406 | 592..697 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:41:30 Download gff for
BO16087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14630164..14630743 | 10..591 | 99 | <- | Plus |
arm_2R | 14630806..14630911 | 592..697 | 100 | | Plus |
BO16087.5prime Sequence
797 bp (702 high quality bases) assembled on 2006-06-16
> BO16087.5prime
GAAGTTATCAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATC
CTAACCCAATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTG
ATAGCATATCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAA
CCGGAAACCATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTC
AGGTGCTATACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTC
ATCGTGGGCATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCA
TGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACA
AGGTCCTCGATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTAT
AAGCAGATCACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGG
AAGTTATGCCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCG
TTGGACTGCTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTT
CTGTCTTCAGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTA
TATAACATTGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCA
TCTATGTGCGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTC
TATCTAAATATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATT
CTATATCGACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAA
BO16087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-PA | 792 | CG18609-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-RA | 989 | CG18609-RA | 52..832 | 17..797 | 3905 | 100 | Plus |
CG17821-RA | 1073 | CG17821-RA | 616..711 | 347..442 | 180 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18742674..18743239 | 797..232 | 2830 | 100 | Minus |
2R | 25286936 | 2R | 18743299..18743486 | 234..47 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 08:24:04 has no hits.
BO16087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:05 Download gff for
BO16087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-PA | 1..779 | 17..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:54:38 Download gff for
BO16087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..830 | 17..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:53:42 Download gff for
BO16087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..830 | 17..795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:53:42 Download gff for
BO16087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18742676..18743238 | 233..795 | 100 | <- | Minus |
2R | 18743301..18743485 | 48..232 | 100 | <- | Minus |
2R | 18743545..18743575 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:54:38 Download gff for
BO16087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14630806..14630990 | 48..232 | 100 | <- | Minus |
arm_2R | 14630181..14630743 | 233..795 | 100 | <- | Minus |
arm_2R | 14631050..14631080 | 17..47 | 100 | | Minus |
BO16087.complete Sequence
823 bp assembled on 2008-08-15
GenBank Submission: FJ633714
> BO16087.complete
GAAGTTATCAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATC
CTAACCCAATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTG
ATAGCATATCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAA
CCGGAAACCATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTC
AGGTGCTATACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTC
ATCGTGGGCATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCA
TGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACA
AGGTCCTCGATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTAT
AAGCAGATCACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGG
AAGTTATGCCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCG
TTGGACTGCTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTT
CTGTCTTCAGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTA
TATAACATTGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCA
TCTATGTGCGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTC
TATCTAAATATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATT
CTATATCGACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAAAGC
AATCGGCAAGCTTTCTAGACCAT
BO16087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-RA | 792 | CG18609-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG17821-RA | 789 | CG17821-PA | 343..438 | 347..442 | 180 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-RA | 989 | CG18609-RA | 52..840 | 17..805 | 3945 | 100 | Plus |
CG17821-RA | 1073 | CG17821-RA | 616..711 | 347..442 | 180 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18742666..18743239 | 805..232 | 2870 | 100 | Minus |
2R | 25286936 | 2R | 18743299..18743486 | 234..47 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:59 has no hits.
BO16087.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:47 Download gff for
BO16087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 42..833 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:30 Download gff for
BO16087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..840 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:35 Download gff for
BO16087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 42..830 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:22 Download gff for
BO16087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..840 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:22 Download gff for
BO16087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18742662..18743238 | 233..807 | 99 | <- | Minus |
2R | 18743301..18743485 | 48..232 | 100 | <- | Minus |
2R | 18743545..18743575 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:30 Download gff for
BO16087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14630167..14630743 | 233..807 | 99 | <- | Minus |
arm_2R | 14630806..14630990 | 48..232 | 100 | <- | Minus |
arm_2R | 14631050..14631080 | 17..47 | 100 | | Minus |
BO16087.pep Sequence
Translation from 16 to 823
> BO16087.pep
MLRYLRIPQADPNPIPLAGSPWPITLILIAYLLFVLKLGKIFMRNRKPYD
LKTVLKVYNLFQVLYNGLYFGMVFYYLFIVGICNLHCIESFPEGHERKQL
ERVLHAAYLLNKVLDLMDTVFFVLRKSYKQITFLHIYHHVFMSFGSYALT
RYYGTGGHVNAVGLLNSLVHTVMYFYYFLSSEYPGVRANIWWKKYITLTQ
LCQFFMLLSYAIYVRFFSPNCGVPRGLLYLNMVQGVVFIYLFGKFYIDNY
LRPPKAKINAKQSASFLDH
BO16087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-PA | 263 | CG18609-PA | 1..263 | 1..263 | 1406 | 100 | Plus |
CG16904-PA | 262 | CG16904-PA | 8..260 | 8..261 | 628 | 48 | Plus |
CG17821-PA | 262 | CG17821-PA | 14..256 | 10..252 | 587 | 44.4 | Plus |
CG8534-PA | 265 | CG8534-PA | 14..252 | 11..251 | 582 | 46.9 | Plus |
eloF-PA | 257 | CG16905-PA | 6..255 | 11..263 | 560 | 43.9 | Plus |