Clone Sequence Records
BO16089.5prime Sequence
443 bp (443 high quality bases) assembled on 2006-06-16
> BO16089.5prime
GAAGTTATCAGTCGACATGAAGGGAGCAGTTGATGGTGGTCTAAACATAC
CTCACTCTGTGAAACGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTT
AATGCCGATGTGCATCGCGCTCATATATTTGGCCAGCACGTTGCAGACTA
TATGCGTTCTTTGGAGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTA
GCCGATACATCAAGTTGGGCATTCGTGCTGATGATCTTGAGGATATCTAT
AAAAAAGCCCACCAGGCAATTCGTAACGACCCTACACACAAGGTCACCGC
TAAGAAGTCTTCTGCCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCA
CAAACGAGCAACGGAAGACTAAGATTGCAGCTCATAAGGCAGCATATGTT
GCCAAGCTGCAGTCTGAAACTGAGGCTGCAAGCTTTCTAGACC
BO16089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17489-PA | 900 | RpL5-RA | 487..897 | 17..427 | 2055 | 100 | Plus |
CG17489-PB | 900 | RpL5-RB | 487..897 | 17..427 | 2055 | 100 | Plus |
CG17489-PC | 963 | RpL5-RC | 550..960 | 17..427 | 2055 | 100 | Plus |
CG17489-PE | 537 | RpL5-RE | 487..529 | 17..59 | 215 | 100 | Plus |
CG17489-PD | 537 | RpL5-RD | 487..529 | 17..59 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 1945 | CG17489-RG | 580..990 | 17..427 | 2055 | 100 | Plus |
RpL5-RH | 3835 | CG17489-RH | 832..1242 | 17..427 | 2055 | 100 | Plus |
RpL5-RB | 1024 | CG17489-RB | 543..953 | 17..427 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22535617..22535835 | 235..17 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 22534872..22535063 | 427..236 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:42:20 has no hits.
BO16089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:07 Download gff for
BO16089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17489-PC | 546..963 | 13..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:41:37 Download gff for
BO16089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RA | 562..979 | 13..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:21 Download gff for
BO16089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 539..956 | 13..431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:21 Download gff for
BO16089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22534868..22535063 | 236..431 | 98 | <- | Minus |
2L | 22535617..22535839 | 13..235 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:41:37 Download gff for
BO16089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22427600..22427795 | 236..431 | 98 | <- | Minus |
arm_2L | 22428349..22428571 | 13..235 | 99 | | Minus |
BO16089.3prime Sequence
443 bp (443 high quality bases) assembled on 2006-06-16
> BO16089.3prime
ATGGTCTAGAAAGCTTGCAGCCTCAGTTTCAGACTGCAGCTTGGCAACAT
ATGCTGCCTTATGAGCTGCAATCTTAGTCTTCCGTTGCTCGTTTGTGAGT
TTCTTAGCATTCCACCTTTTCTTCGTAACGGCAGAAGACTTCTTAGCGGT
GACCTTGTGTGTAGGGTCGTTACGAATTGCCTGGTGGGCTTTTTTATAGA
TATCCTCAAGATCATCAGCACGAATGCCCAACTTGATGTATCGGCTAAAC
TGCCTTTTGAAGCTCTCCTCATCCTCCTCCTCCAAAGAACGCATATAGTC
TGCAACGTGCTGGCCAAATATATGAGCGCGATGCACATCGGCATTAAAGC
TCTTGGTTTCAGCAGAGTATCCAGGAAAGCGTTTCACAGAGTGAGGTATG
TTTAGACCACCATCAACTGCTCCCTTCATGTCGACTGATAACT
BO16089.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17489-PA | 900 | RpL5-RA | 487..897 | 429..19 | 2055 | 100 | Minus |
CG17489-PB | 900 | RpL5-RB | 487..897 | 429..19 | 2055 | 100 | Minus |
CG17489-PC | 963 | RpL5-RC | 550..960 | 429..19 | 2055 | 100 | Minus |
CG17489-PE | 537 | RpL5-RE | 487..529 | 429..387 | 215 | 100 | Minus |
CG17489-PD | 537 | RpL5-RD | 487..529 | 429..387 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 04:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 1945 | CG17489-RG | 580..990 | 429..19 | 2055 | 100 | Minus |
RpL5-RH | 3835 | CG17489-RH | 832..1242 | 429..19 | 2055 | 100 | Minus |
RpL5-RB | 1024 | CG17489-RB | 543..953 | 429..19 | 2055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 04:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22535617..22535835 | 211..429 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 22534872..22535063 | 19..210 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 04:58:51 has no hits.
BO16089.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:06 Download gff for
BO16089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17489-PC | 546..963 | 15..433 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:13:24 Download gff for
BO16089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RA | 562..979 | 15..433 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:26:11 Download gff for
BO16089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 539..956 | 15..433 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:26:11 Download gff for
BO16089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22534868..22535063 | 15..210 | 98 | <- | Plus |
2L | 22535617..22535839 | 211..433 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:13:24 Download gff for
BO16089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22427600..22427795 | 15..210 | 98 | <- | Plus |
arm_2L | 22428349..22428571 | 211..433 | 99 | | Plus |
BO16089.complete Sequence
445 bp assembled on 2008-08-15
GenBank Submission: KX798906
> BO16089.complete
GAAGTTATCAGTCGACATGAAGGGAGCAGTTGATGGTGGTCTAAACATAC
CTCACTCTGTGAAACGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTT
AATGCCGATGTGCATCGCGCTCATATATTTGGCCAGCACGTTGCAGACTA
TATGCGTTCTTTGGAGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTA
GCCGATACATCAAGTTGGGCATTCGTGCTGATGATCTTGAGGATATCTAT
AAAAAAGCCCACCAGGCAATTCGTAACGACCCTACACACAAGGTCACCGC
TAAGAAGTCTTCTGCCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCA
CAAACGAGCAACGGAAGACTAAGATTGCAGCTCATAAGGCAGCATATGTT
GCCAAGCTGCAGTCTGAAACTGAGGCTGCAAGCTTTCTAGACCAT
BO16089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 900 | CG17489-PG | 487..897 | 17..427 | 2055 | 100 | Plus |
RpL5-RH | 900 | CG17489-PH | 487..897 | 17..427 | 2055 | 100 | Plus |
RpL5-RB | 900 | CG17489-PB | 487..897 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 1945 | CG17489-RG | 580..990 | 17..427 | 2055 | 100 | Plus |
RpL5-RH | 3835 | CG17489-RH | 832..1242 | 17..427 | 2055 | 100 | Plus |
RpL5-RB | 1024 | CG17489-RB | 543..953 | 17..427 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22535617..22535835 | 235..17 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 22534872..22535063 | 427..236 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:34:22 has no hits.
BO16089.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:06 Download gff for
BO16089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 576..993 | 13..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:15 Download gff for
BO16089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RA | 566..976 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:51 Download gff for
BO16089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 580..990 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:35 Download gff for
BO16089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 543..953 | 17..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:35 Download gff for
BO16089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22535617..22535835 | 17..235 | 100 | | Minus |
2L | 22534870..22535063 | 236..429 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:15 Download gff for
BO16089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22427602..22427795 | 236..429 | 98 | <- | Minus |
arm_2L | 22428349..22428567 | 17..235 | 100 | | Minus |
BO16089.pep Sequence
Translation from 16 to 445
> BO16089.pep
MKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLE
EEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSA
VTKKRWNAKKLTNEQRKTKIAAHKAAYVAKLQSETEAASFLDH
BO16089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-PG | 299 | CG17489-PG | 163..299 | 1..137 | 706 | 100 | Plus |
RpL5-PH | 299 | CG17489-PH | 163..299 | 1..137 | 706 | 100 | Plus |
RpL5-PB | 299 | CG17489-PB | 163..299 | 1..137 | 706 | 100 | Plus |
RpL5-PA | 299 | CG17489-PA | 163..299 | 1..137 | 706 | 100 | Plus |