Clone BO16089 Report

Search the DGRC for BO16089

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptRpL5-RF
Protein status:BO16089.pep: Imported from assembly
Sequenced Size:445

Clone Sequence Records

BO16089.5prime Sequence

443 bp (443 high quality bases) assembled on 2006-06-16

> BO16089.5prime
GAAGTTATCAGTCGACATGAAGGGAGCAGTTGATGGTGGTCTAAACATAC
CTCACTCTGTGAAACGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTT
AATGCCGATGTGCATCGCGCTCATATATTTGGCCAGCACGTTGCAGACTA
TATGCGTTCTTTGGAGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTA
GCCGATACATCAAGTTGGGCATTCGTGCTGATGATCTTGAGGATATCTAT
AAAAAAGCCCACCAGGCAATTCGTAACGACCCTACACACAAGGTCACCGC
TAAGAAGTCTTCTGCCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCA
CAAACGAGCAACGGAAGACTAAGATTGCAGCTCATAAGGCAGCATATGTT
GCCAAGCTGCAGTCTGAAACTGAGGCTGCAAGCTTTCTAGACC

BO16089.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17489-PA 900 RpL5-RA 487..897 17..427 2055 100 Plus
CG17489-PB 900 RpL5-RB 487..897 17..427 2055 100 Plus
CG17489-PC 963 RpL5-RC 550..960 17..427 2055 100 Plus
CG17489-PE 537 RpL5-RE 487..529 17..59 215 100 Plus
CG17489-PD 537 RpL5-RD 487..529 17..59 215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 1945 CG17489-RG 580..990 17..427 2055 100 Plus
RpL5-RH 3835 CG17489-RH 832..1242 17..427 2055 100 Plus
RpL5-RB 1024 CG17489-RB 543..953 17..427 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22535835 235..17 1095 100 Minus
2L 23513712 2L 22534872..22535063 427..236 960 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:42:20 has no hits.

BO16089.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:07 Download gff for BO16089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17489-PC 546..963 13..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:41:37 Download gff for BO16089.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 562..979 13..431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:21 Download gff for BO16089.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 539..956 13..431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:21 Download gff for BO16089.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22534868..22535063 236..431 98 <- Minus
2L 22535617..22535839 13..235 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:41:37 Download gff for BO16089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427600..22427795 236..431 98 <- Minus
arm_2L 22428349..22428571 13..235 99   Minus

BO16089.3prime Sequence

443 bp (443 high quality bases) assembled on 2006-06-16

> BO16089.3prime
ATGGTCTAGAAAGCTTGCAGCCTCAGTTTCAGACTGCAGCTTGGCAACAT
ATGCTGCCTTATGAGCTGCAATCTTAGTCTTCCGTTGCTCGTTTGTGAGT
TTCTTAGCATTCCACCTTTTCTTCGTAACGGCAGAAGACTTCTTAGCGGT
GACCTTGTGTGTAGGGTCGTTACGAATTGCCTGGTGGGCTTTTTTATAGA
TATCCTCAAGATCATCAGCACGAATGCCCAACTTGATGTATCGGCTAAAC
TGCCTTTTGAAGCTCTCCTCATCCTCCTCCTCCAAAGAACGCATATAGTC
TGCAACGTGCTGGCCAAATATATGAGCGCGATGCACATCGGCATTAAAGC
TCTTGGTTTCAGCAGAGTATCCAGGAAAGCGTTTCACAGAGTGAGGTATG
TTTAGACCACCATCAACTGCTCCCTTCATGTCGACTGATAACT

BO16089.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17489-PA 900 RpL5-RA 487..897 429..19 2055 100 Minus
CG17489-PB 900 RpL5-RB 487..897 429..19 2055 100 Minus
CG17489-PC 963 RpL5-RC 550..960 429..19 2055 100 Minus
CG17489-PE 537 RpL5-RE 487..529 429..387 215 100 Minus
CG17489-PD 537 RpL5-RD 487..529 429..387 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 04:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 1945 CG17489-RG 580..990 429..19 2055 100 Minus
RpL5-RH 3835 CG17489-RH 832..1242 429..19 2055 100 Minus
RpL5-RB 1024 CG17489-RB 543..953 429..19 2055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 04:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22535835 211..429 1095 100 Plus
2L 23513712 2L 22534872..22535063 19..210 960 100 Plus
Blast to na_te.dros performed on 2015-02-03 04:58:51 has no hits.

BO16089.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:06 Download gff for BO16089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17489-PC 546..963 15..433 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:13:24 Download gff for BO16089.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 562..979 15..433 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:26:11 Download gff for BO16089.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 539..956 15..433 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:26:11 Download gff for BO16089.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22534868..22535063 15..210 98 <- Plus
2L 22535617..22535839 211..433 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:13:24 Download gff for BO16089.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427600..22427795 15..210 98 <- Plus
arm_2L 22428349..22428571 211..433 99   Plus

BO16089.complete Sequence

445 bp assembled on 2008-08-15

GenBank Submission: KX798906

> BO16089.complete
GAAGTTATCAGTCGACATGAAGGGAGCAGTTGATGGTGGTCTAAACATAC
CTCACTCTGTGAAACGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTT
AATGCCGATGTGCATCGCGCTCATATATTTGGCCAGCACGTTGCAGACTA
TATGCGTTCTTTGGAGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTA
GCCGATACATCAAGTTGGGCATTCGTGCTGATGATCTTGAGGATATCTAT
AAAAAAGCCCACCAGGCAATTCGTAACGACCCTACACACAAGGTCACCGC
TAAGAAGTCTTCTGCCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCA
CAAACGAGCAACGGAAGACTAAGATTGCAGCTCATAAGGCAGCATATGTT
GCCAAGCTGCAGTCTGAAACTGAGGCTGCAAGCTTTCTAGACCAT

BO16089.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 900 CG17489-PG 487..897 17..427 2055 100 Plus
RpL5-RH 900 CG17489-PH 487..897 17..427 2055 100 Plus
RpL5-RB 900 CG17489-PB 487..897 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 1945 CG17489-RG 580..990 17..427 2055 100 Plus
RpL5-RH 3835 CG17489-RH 832..1242 17..427 2055 100 Plus
RpL5-RB 1024 CG17489-RB 543..953 17..427 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22535835 235..17 1095 100 Minus
2L 23513712 2L 22534872..22535063 427..236 960 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:34:22 has no hits.

BO16089.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:06 Download gff for BO16089.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 576..993 13..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:15 Download gff for BO16089.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 566..976 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:51 Download gff for BO16089.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 580..990 17..429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:35 Download gff for BO16089.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 543..953 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:35 Download gff for BO16089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22535617..22535835 17..235 100   Minus
2L 22534870..22535063 236..429 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:15 Download gff for BO16089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427602..22427795 236..429 98 <- Minus
arm_2L 22428349..22428567 17..235 100   Minus

BO16089.pep Sequence

Translation from 16 to 445

> BO16089.pep
MKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLE
EEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSA
VTKKRWNAKKLTNEQRKTKIAAHKAAYVAKLQSETEAASFLDH

BO16089.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-PG 299 CG17489-PG 163..299 1..137 706 100 Plus
RpL5-PH 299 CG17489-PH 163..299 1..137 706 100 Plus
RpL5-PB 299 CG17489-PB 163..299 1..137 706 100 Plus
RpL5-PA 299 CG17489-PA 163..299 1..137 706 100 Plus