Clone Sequence Records
BO16090.3prime Sequence
762 bp (688 high quality bases) assembled on 2006-06-16
> BO16090.3prime
ATGGTCTAGGAAAGCTTGCACTAAACATACGTTGCACCACCTCCTTGTAA
TGGGCCTTGCTATCCTTCCAGCTAACAGCGATGTTGTCGCGCAGCTTGCT
GAACTCTCGCTTCTCCTCGTAGTTGGGCATTCGCTCGATGGTGGCTTGCG
CCTTGGCGAACTCCTTCAGGTGATAGTAGGCGAGTGCACGCCGGTAGATG
CTCTTCTCGCTGGGACTCTCCTCCGTCTCCACAAACTGCGTGTGGTAGAT
TACATGCTCATAGCGTTTCTCCTGCAGCAAACAGGCGGCCAGGTTGGTCT
GTATCTGAATAAAGAGCTCCTCCACCGCCTGGCCGTTGATGCCATTGGTC
TTTTTGGTCAGTTTATCGAAGGGTTTGTAGGTGATCAGCAACTTTGCGGC
ACGCACAAAGTAATCAAAGGCGAATTTCGGGAACGTCTTAAAGGTGGCCA
CGCCGCTTTCCTTGAGACGTAGTGCCACCTCATAGATCTCTGCAGCGCTT
AGCTTCTCCACCTGAGTGTTCTTCACAATTTTCTCCAGCTTCAGTTCAAA
TTCTATTCGTTCGCCGGTTTTTGTCGTGATGCTACAGGCTGCCGTTTCAC
CCGGCACAAATTGCTGCAGCAGCAGCTCCAAGTAGCAGTCCACTGCGGTC
AGGCTGGTGCCCATTTCCAGGCTGTGCTTTTGAGGATACGTAGCGGACTC
ATCGCTGACCANATATTTGCTAGGTCGTCCTCCCAAGTTGGGGGCTTTCT
TGTTGACACTGA
BO16090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17282-PA | 861 | CG17282-RA | 116..858 | 762..20 | 3646 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 1000 | CG17282-RA | 188..930 | 762..20 | 3674 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21117927..21118669 | 20..762 | 3674 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:33:56 has no hits.
BO16090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:08 Download gff for
BO16090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-PA | 117..861 | 19..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:49 Download gff for
BO16090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 189..935 | 12..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:14 Download gff for
BO16090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bdbt-RA | 189..935 | 12..761 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:14 Download gff for
BO16090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21117922..21118668 | 12..761 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:49 Download gff for
BO16090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16943644..16944390 | 12..761 | 99 | | Plus |
BO16090.5prime Sequence
808 bp (668 high quality bases) assembled on 2006-06-16
> BO16090.5prime
GAAGTTATCAGTCGACATGGACTGGTACGTGGGCACAGAGTGGGAGGACA
AGAACCGTGGTCTGGCCAAGAAGGTAATTGGCCTCCAATTCACCGAAATG
GACAAGCCCACGATAATCAGTACGGTGGAATTCAGTGTCAACAAGAAAGC
CACCAACTTGGGAGGACGACCTAGCAAATATTTGGTCAGCGATGAGTCCG
CTACGTATCCTCAAAAGCACAGCCTGGAAATGGGCACCAGCCTGACCGCA
GTGGACTGCTACTTGGAGCTGCTGCTGCAGCAATTTGTGCCGGGTGAAAC
GGCAGCCTGTAGCATCACGACAAAAACCGGCGAACGAATAGAATTTGAAC
TGAAGCTGGAGAAAATTGTGAAGAACACTCAGGTGGAGAAGCTAAGCGCT
GCAGAGATCTATGAGGTGGCACTACGTCTCAAGGAAAGCGGCGTGGCCAC
CTTTAAGACGTTCCCGAAATTCGCCTTTGATTACTTTGTGCGTGCCGCAA
AGTTGCTGATCACCTACAAACCCTTCGATAAACTGACCAAAAAGACCAAT
GGCATCAACGGCCAGGCGGTGGAGGAGCTCTTTATTCAGATACAGACCAA
CCTGGCCGCCTGTTTGCTGCAGGAGAAACGCTATGAGCATGTAATCTACC
ACACGCAGTTTGTGGAGACGGAGGAGAGTCCCAGCGAGAAGAGCATCTAC
CGGCGTGCACTCGCCTACTATCACCTGAAGGAGTTCGCCAAGGCGCAAGC
CACCATCGAGCGAATGCCCACTACGAGGAGAAGCGAGAGTTCAGCAGGCT
GCGCGACA
BO16090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17282-PA | 861 | CG17282-RA | 1..793 | 17..808 | 3875 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 1000 | CG17282-RA | 73..865 | 17..808 | 3910 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21117992..21118784 | 808..17 | 3885 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:52:16 has no hits.
BO16090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:08 Download gff for
BO16090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-PA | 1..792 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:14:43 Download gff for
BO16090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 73..864 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:19 Download gff for
BO16090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bdbt-RA | 73..864 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:19 Download gff for
BO16090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21117993..21118784 | 17..807 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:14:43 Download gff for
BO16090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16943715..16944506 | 17..807 | 99 | | Minus |
BO16090.complete Sequence
893 bp assembled on 2011-06-28
> BO16090.complete
GAAGTTATCAGTCGACATGGACTGGTACGTGGGCACAGAGTGGGAGGACA
AGAACCGTGGTCTGGCCAAGAAGGTAATTGGCCTCCAATTCACCGAAATG
GACAAGCCCACGATAATCAGTACGGTGGAATTCAGTGTCAACAAGAAAGC
CACCAACTTGGGAGGACGACCTAGCAAATATTTGGTCAGCGATGAGTCCG
CTACGTATCCTCAAAAGCACAGCCTGGAAATGGGCACCAGCCTGACCGCA
GTGGACTGCTACTTGGAGCTGCTGCTGCAGCAATTTGTGCCGGGTGAAAC
GGCAGCCTGTAGCATCACGACAAAAACCGGCGAACGAATAGAATTTGAAC
TGAAGCTGGAGAAAATTGTGAAGAACACTCAGGTGGAGAAGCTAAGCGCT
GCAGAGATCTATGAGGTGGCACTACGTCTCAAGGAAAGCGGCGTGGCCAC
CTTTAAGACGTTCCCGAAATTCGCCTTTGATTACTTTGTGCGTGCCGCAA
AGTTGCTGATCACCTACAAACCCTTCGATAAACTGACCAAAAAGACCAAT
GGCATCAACGGCCAGGCGGTGGAGGAGCTCTTTATTCAGATACAGACCAA
CCTGGCCGCCTGTTTGCTGCAGGAGAAACGCTATGAGCATGTAATCTACC
ACACGCAGTTTGTGGAGACGGAGGAGAGTCCCAGCGAGAAGAGCATCTAC
CGGCGTGCACTCGCCTACTATCACCTGAAGGAGTTCGCCAAGGCGCAAGC
CACCATCGAGCGAATGCCCAACTACGAGGAGAAGCGAGAGTTCAGCAAGC
TGCGCGACAACATCGCTGTTAGCTGGAAGGATAGCAAGGCCCATTACAAG
GAGGTGGTGCAACGTATGTTTAGTGCAAGCTTTCCTAGACCAT
BO16090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 861 | CG17282-PA | 1..858 | 17..874 | 4275 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 1000 | CG17282-RA | 73..930 | 17..874 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21117927..21118784 | 874..17 | 4275 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:02 has no hits.
BO16090.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:32 Download gff for
BO16090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 66..923 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:47 Download gff for
BO16090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 73..930 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:13 Download gff for
BO16090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bdbt-RA | 73..930 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:13 Download gff for
BO16090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21117925..21118784 | 17..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:47 Download gff for
BO16090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16943647..16944506 | 17..876 | 99 | | Minus |
BO16090.pep Sequence
Translation from 16 to 892
> BO16090.pep
MDWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFSVNKKATNLGG
RPSKYLVSDESATYPQKHSLEMGTSLTAVDCYLELLLQQFVPGETAACSI
TTKTGERIEFELKLEKIVKNTQVEKLSAAEIYEVALRLKESGVATFKTFP
KFAFDYFVRAAKLLITYKPFDKLTKKTNGINGQAVEELFIQIQTNLAACL
LQEKRYEHVIYHTQFVETEESPSEKSIYRRALAYYHLKEFAKAQATIERM
PNYEEKREFSKLRDNIAVSWKDSKAHYKEVVQRMFSASFPRP
BO16090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-PA | 286 | CG17282-PA | 1..286 | 1..286 | 1465 | 100 | Plus |
