Clone Sequence Records
BO16091.3prime Sequence
494 bp (494 high quality bases) assembled on 2006-06-16
> BO16091.3prime
ATGGTCTAGAAAGCTTGCGTCGGCCGGACGTTTTTCGCTGTGCTTCTTGG
TGTAGTCCTCGGCGTTTTTCACGAATTTTTTGCGATCCTTAAGAAACTCC
TCGGCCAACTCCGCCCGCAGCGGATGCTCCGGCTCAGGGTCGTTGATTAA
GTCCACCAGTGCCTGCACGACCTGGTCGGTGCGTGTGGCCGGTTTCCAGT
TCTCCGTACTGATAATGGGCAAGCACACCTGGCCCTTCTCATCGATGTTT
GGATGGTAGATGCGTGTCTTAAAGTTAATCTTGGGCGGCTTGAAAGGATA
CTCCGCCGGAAAGTTGATCTCGATGCGGAAGGCGCCCTTGTTGTACGGCG
GATTGTCCGGGACAATCAATCCCGTCCAGCGCAGCAGGTTGTCATCGTCC
GCCTTAATGTCCCGGAAGGACTTCAGTGCGTTGCCCTGCAAATCGCTCAA
TTCTTTTCGCAGGCGTCGCGGCGCAGTCATGTCGACTGATAACT
BO16091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5788-PA | 465 | UbcD10-RA | 1..462 | 480..19 | 2310 | 100 | Minus |
CG12799-PA | 462 | Ubc84D-RA | 136..170 | 345..311 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-RA | 999 | CG5788-RA | 309..770 | 480..19 | 2310 | 100 | Minus |
Ubc84D-RA | 637 | CG12799-RA | 191..536 | 388..43 | 440 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17788641..17789102 | 19..480 | 2310 | 100 | Plus |
3R | 32079331 | 3R | 7518921..7519266 | 43..388 | 440 | 75.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:36:27 has no hits.
BO16091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:09 Download gff for
BO16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5788-PA | 1..465 | 18..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:02:19 Download gff for
BO16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 302..774 | 13..488 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:28 Download gff for
BO16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc10-RA | 302..774 | 13..488 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:28 Download gff for
BO16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17788637..17789109 | 13..488 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:02:19 Download gff for
BO16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13676142..13676614 | 13..488 | 98 | | Plus |
BO16091.5prime Sequence
494 bp (494 high quality bases) assembled on 2006-06-16
> BO16091.5prime
GAAGTTATCAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGA
GCGATTTGCAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGAC
GATGACAACCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCC
GTACAACAAGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATC
CTTTCAAGCCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAAC
ATCGATGAGAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTG
GAAACCGGCCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAA
TCAACGACCCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAG
TTTCTTAAGGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAA
GAAGCACAGCGAAAAACGTCCGGCCGACGCAAGCTTTCTAGACC
BO16091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5788-PA | 465 | UbcD10-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
CG12799-PA | 462 | Ubc84D-RA | 136..170 | 152..186 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-RA | 999 | CG5788-RA | 309..770 | 17..478 | 2310 | 100 | Plus |
Ubc84D-RA | 637 | CG12799-RA | 191..536 | 109..454 | 440 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17788641..17789102 | 478..17 | 2310 | 100 | Minus |
3R | 32079331 | 3R | 7518921..7519266 | 454..109 | 440 | 75.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:40:21 has no hits.
BO16091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:10 Download gff for
BO16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5788-PA | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:16 Download gff for
BO16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 302..774 | 9..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:42 Download gff for
BO16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc10-RA | 302..774 | 9..484 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:42 Download gff for
BO16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17788637..17789109 | 9..484 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:16 Download gff for
BO16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13676142..13676614 | 9..484 | 98 | | Minus |
BO16091.complete Sequence
496 bp assembled on 2008-08-15
GenBank Submission: FJ633715
> BO16091.complete
GAAGTTATCAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGA
GCGATTTGCAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGAC
GATGACAACCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCC
GTACAACAAGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATC
CTTTCAAGCCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAAC
ATCGATGAGAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTG
GAAACCGGCCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAA
TCAACGACCCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAG
TTTCTTAAGGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAA
GAAGCACAGCGAAAAACGTCCGGCCGACGCAAGCTTTCTAGACCAT
BO16091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-RA | 465 | CG5788-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Ubc84D-RA | 462 | CG12799-PA | 93..438 | 109..454 | 440 | 75.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-RA | 999 | CG5788-RA | 309..770 | 17..478 | 2310 | 100 | Plus |
Ubc84D-RA | 637 | CG12799-RA | 191..536 | 109..454 | 440 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17788641..17789102 | 478..17 | 2310 | 100 | Minus |
3R | 32079331 | 3R | 7518921..7519266 | 454..109 | 440 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:57:36 has no hits.
BO16091.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:04 Download gff for
BO16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 301..773 | 9..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:49 Download gff for
BO16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 309..770 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:42 Download gff for
BO16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 308..769 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:06 Download gff for
BO16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc10-RA | 309..770 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:06 Download gff for
BO16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17788637..17789102 | 17..480 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:49 Download gff for
BO16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13676142..13676607 | 17..480 | 99 | | Minus |
BO16091.pep Sequence
Translation from 16 to 496
> BO16091.pep
MTAPRRLRKELSDLQGNALKSFRDIKADDDNLLRWTGLIVPDNPPYNKGA
FRIEINFPAEYPFKPPKINFKTRIYHPNIDEKGQVCLPIISTENWKPATR
TDQVVQALVDLINDPEPEHPLRAELAEEFLKDRKKFVKNAEDYTKKHSEK
RPADASFLDH
BO16091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-PA | 154 | CG5788-PA | 1..154 | 1..154 | 823 | 100 | Plus |
Ubc84D-PA | 153 | CG12799-PA | 1..152 | 1..152 | 581 | 66.4 | Plus |
CG17030-PA | 180 | CG17030-PA | 9..163 | 1..154 | 411 | 45.8 | Plus |
eff-PC | 147 | CG7425-PC | 2..146 | 3..148 | 286 | 39.5 | Plus |
eff-PB | 147 | CG7425-PB | 2..146 | 3..148 | 286 | 39.5 | Plus |