Clone BO16091 Report

Search the DGRC for BO16091

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptUbcD10-RA
Protein status:BO16091.pep: Imported from assembly
Sequenced Size:496

Clone Sequence Records

BO16091.3prime Sequence

494 bp (494 high quality bases) assembled on 2006-06-16

> BO16091.3prime
ATGGTCTAGAAAGCTTGCGTCGGCCGGACGTTTTTCGCTGTGCTTCTTGG
TGTAGTCCTCGGCGTTTTTCACGAATTTTTTGCGATCCTTAAGAAACTCC
TCGGCCAACTCCGCCCGCAGCGGATGCTCCGGCTCAGGGTCGTTGATTAA
GTCCACCAGTGCCTGCACGACCTGGTCGGTGCGTGTGGCCGGTTTCCAGT
TCTCCGTACTGATAATGGGCAAGCACACCTGGCCCTTCTCATCGATGTTT
GGATGGTAGATGCGTGTCTTAAAGTTAATCTTGGGCGGCTTGAAAGGATA
CTCCGCCGGAAAGTTGATCTCGATGCGGAAGGCGCCCTTGTTGTACGGCG
GATTGTCCGGGACAATCAATCCCGTCCAGCGCAGCAGGTTGTCATCGTCC
GCCTTAATGTCCCGGAAGGACTTCAGTGCGTTGCCCTGCAAATCGCTCAA
TTCTTTTCGCAGGCGTCGCGGCGCAGTCATGTCGACTGATAACT

BO16091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5788-PA 465 UbcD10-RA 1..462 480..19 2310 100 Minus
CG12799-PA 462 Ubc84D-RA 136..170 345..311 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 999 CG5788-RA 309..770 480..19 2310 100 Minus
Ubc84D-RA 637 CG12799-RA 191..536 388..43 440 75.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17788641..17789102 19..480 2310 100 Plus
3R 32079331 3R 7518921..7519266 43..388 440 75.1 Plus
Blast to na_te.dros performed on 2015-02-10 14:36:27 has no hits.

BO16091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:09 Download gff for BO16091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5788-PA 1..465 18..480 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:02:19 Download gff for BO16091.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 302..774 13..488 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:28 Download gff for BO16091.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc10-RA 302..774 13..488 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:28 Download gff for BO16091.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17788637..17789109 13..488 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:02:19 Download gff for BO16091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13676142..13676614 13..488 98   Plus

BO16091.5prime Sequence

494 bp (494 high quality bases) assembled on 2006-06-16

> BO16091.5prime
GAAGTTATCAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGA
GCGATTTGCAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGAC
GATGACAACCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCC
GTACAACAAGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATC
CTTTCAAGCCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAAC
ATCGATGAGAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTG
GAAACCGGCCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAA
TCAACGACCCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAG
TTTCTTAAGGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAA
GAAGCACAGCGAAAAACGTCCGGCCGACGCAAGCTTTCTAGACC

BO16091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5788-PA 465 UbcD10-RA 1..462 17..478 2310 100 Plus
CG12799-PA 462 Ubc84D-RA 136..170 152..186 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 999 CG5788-RA 309..770 17..478 2310 100 Plus
Ubc84D-RA 637 CG12799-RA 191..536 109..454 440 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17788641..17789102 478..17 2310 100 Minus
3R 32079331 3R 7518921..7519266 454..109 440 75.1 Minus
Blast to na_te.dros performed on 2015-02-10 18:40:21 has no hits.

BO16091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:10 Download gff for BO16091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5788-PA 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:16 Download gff for BO16091.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 302..774 9..484 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:42 Download gff for BO16091.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc10-RA 302..774 9..484 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:42 Download gff for BO16091.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17788637..17789109 9..484 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:16 Download gff for BO16091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13676142..13676614 9..484 98   Minus

BO16091.complete Sequence

496 bp assembled on 2008-08-15

GenBank Submission: FJ633715

> BO16091.complete
GAAGTTATCAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGA
GCGATTTGCAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGAC
GATGACAACCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCC
GTACAACAAGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATC
CTTTCAAGCCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAAC
ATCGATGAGAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTG
GAAACCGGCCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAA
TCAACGACCCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAG
TTTCTTAAGGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAA
GAAGCACAGCGAAAAACGTCCGGCCGACGCAAGCTTTCTAGACCAT

BO16091.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 465 CG5788-PA 1..462 17..478 2310 100 Plus
Ubc84D-RA 462 CG12799-PA 93..438 109..454 440 75.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 999 CG5788-RA 309..770 17..478 2310 100 Plus
Ubc84D-RA 637 CG12799-RA 191..536 109..454 440 75.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17788641..17789102 478..17 2310 100 Minus
3R 32079331 3R 7518921..7519266 454..109 440 75.1 Minus
Blast to na_te.dros performed on 2014-11-27 12:57:36 has no hits.

BO16091.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:04 Download gff for BO16091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 301..773 9..484 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:49 Download gff for BO16091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 309..770 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:42 Download gff for BO16091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 308..769 17..480 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:06 Download gff for BO16091.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc10-RA 309..770 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:06 Download gff for BO16091.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17788637..17789102 17..480 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:49 Download gff for BO16091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13676142..13676607 17..480 99   Minus

BO16091.pep Sequence

Translation from 16 to 496

> BO16091.pep
MTAPRRLRKELSDLQGNALKSFRDIKADDDNLLRWTGLIVPDNPPYNKGA
FRIEINFPAEYPFKPPKINFKTRIYHPNIDEKGQVCLPIISTENWKPATR
TDQVVQALVDLINDPEPEHPLRAELAEEFLKDRKKFVKNAEDYTKKHSEK
RPADASFLDH

BO16091.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-PA 154 CG5788-PA 1..154 1..154 823 100 Plus
Ubc84D-PA 153 CG12799-PA 1..152 1..152 581 66.4 Plus
CG17030-PA 180 CG17030-PA 9..163 1..154 411 45.8 Plus
eff-PC 147 CG7425-PC 2..146 3..148 286 39.5 Plus
eff-PB 147 CG7425-PB 2..146 3..148 286 39.5 Plus