Clone Sequence Records
BO16092.complete Sequence
817 bp assembled on 2009-07-30
GenBank Submission: KX796155
> BO16092.complete
GAAGTTATCAGTCGACATGAACCGAAATTACATTGTCATACTGCAGCTGC
TGGGAGTGTTGGTTGTGCTGACCTACGCCAGTGCAATCCCCAAATACGAA
GATAGCCATAAGTTCTATGCGGATAAGGCGCAGCGGGATAGGTCGTACTT
TAATGAAAACAAGACCCAGCCTAGTGAACCGCAGACAGCTTCCACGAAGG
ATAGACTGGAACGACTGGGCTATACCACTGGCTACGGATCCCTAAATGGT
TATCCTGGCGGTACTGGACTATCCGCCTACAATCCCATAAAACTGGACCT
GGGTGGCGTTGTCTTAGGAACTCTTGTGGGCATAGGTGCCATTATACTGA
TTCCTAAGATTCTATCCGCCTTCCATGGTGGTTATGGAGGCTACGGCCGC
AGCGAGGACAGTGACCTAACACCACTGAGCAGCATGATCAATAAGATTGA
CGATGTTCTGGGCCAGAATAATATTGACTCGACGAGTTGCATGCAACGTG
CTGTGTGCGGTTATGTTCGCTCTACGGAGTATAATATGAAGATCGGTTCC
TCAGACCAGATGGACGAATTTATTCATATGCTAGCGGAAAATGCCCTGGT
GGATTACCTCCTCGATGGAACGGCTATTAAGGAGGCATTGGAGCATGGAA
AGCGAGCCAATGATCGAGCCTGTGAAGAGGTGTACTCCAATTGTCCGCTG
GACAGTAAATCAGCTACGGATATTCTAATGAAGCTGATGCCAAAGAAAAA
CCCACAAGGAAAAGGAAAATCATCTGGAATTTCCCGAGAAAAGAAGGTTG
CAAGCTTTCTAGACCAT
BO16092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-RA | 786 | CG14686-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-RA | 1005 | CG14686-RA | 124..906 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10780516..10780726 | 589..799 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 10780261..10780447 | 402..588 | 935 | 100 | Plus |
3R | 32079331 | 3R | 10780049..10780207 | 248..406 | 780 | 99.4 | Plus |
3R | 32079331 | 3R | 10779838..10779974 | 112..248 | 685 | 100 | Plus |
3R | 32079331 | 3R | 10779692..10779788 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:26:51 has no hits.
BO16092.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:34 Download gff for
BO16092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14686-RA | 118..900 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:52 Download gff for
BO16092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 124..906 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:48 Download gff for
BO16092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 124..906 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:48 Download gff for
BO16092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10779692..10779786 | 17..111 | 100 | -> | Plus |
3R | 10779838..10779973 | 112..247 | 100 | -> | Plus |
3R | 10780049..10780202 | 248..401 | 100 | -> | Plus |
3R | 10780261..10780447 | 402..588 | 100 | -> | Plus |
3R | 10780516..10780726 | 589..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:52 Download gff for
BO16092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6605771..6605924 | 248..401 | 100 | -> | Plus |
arm_3R | 6605983..6606169 | 402..588 | 100 | -> | Plus |
arm_3R | 6606238..6606448 | 589..801 | 99 | | Plus |
arm_3R | 6605414..6605508 | 17..111 | 100 | -> | Plus |
arm_3R | 6605560..6605695 | 112..247 | 100 | -> | Plus |
BO16092.3prime Sequence
708 bp (690 high quality bases) assembled on 2006-06-16
> BO16092.3prime
ATGGTCTAGAAAGCTTGCAACCTTCTTTTCTCGGGAAATTCCAGATGATT
TTCCTTTTCCTTGTGGGTTTTTCTTTGGCATCAGCTTCATTAGAATATCC
GTAGCTGATTTACTGTCCAGCGGACAATTGGAGTACACCTCTTCACAGGC
TCGATCATTGGCTCGCTTTCCATGCTCCAATGCCTCCTTAATAGCCGTTC
CATCGAGGAGGTAATCCACCAGGGCATTTTCCGCTAGCATATGAATAAAT
TCGTCCATCTGGTCTGAGGAACCGATCTTCATATTATACTCCGTAGAGCG
AACATAACCGCACACAGCACGTTGCATGCAACTCGTCGAGTCAATATTAT
TCTGGCCCAGAACATCGTCAATCTTATTGATCATGCTGCTCAGTGGTGTT
AGGTCACTGTCCTCGCTGCGGCCGTAGCCTCCATAACCACCATGGAAGGC
GGATAGAATCTTAGGAATCAGTATAATGGCACCTATGCCCACAAGAGTTC
CTAAGACAACGCCACCCAGGTCCAGTTTTATGGGATTGTAGGCGGATAGT
CCAGTACCGCCAGGATAACCATTTAGGGATCCGTAGCCAGTGGTATAGCC
CAGTCGTTCCAGTCTATCCTTCGTGGAAGCTGTCTGCGGTTCACTAGGCT
GGGTCTTGTTTTCATTAAAGTACGACCTATCCCGCTGCGCCTTATCCGCA
TAGAACTT
BO16092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14686-PA | 786 | CG14686-RA | 94..783 | 708..19 | 3450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-RA | 1005 | CG14686-RA | 217..906 | 708..19 | 3450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10780516..10780726 | 229..19 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 10780261..10780447 | 416..230 | 935 | 100 | Minus |
3R | 32079331 | 3R | 10780049..10780207 | 570..412 | 780 | 99.4 | Minus |
3R | 32079331 | 3R | 10779838..10779974 | 706..570 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:40:27 has no hits.
BO16092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:11 Download gff for
BO16092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14686-PA | 94..786 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:17 Download gff for
BO16092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 217..911 | 11..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:00 Download gff for
BO16092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 217..911 | 11..708 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:00 Download gff for
BO16092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10779836..10779973 | 571..708 | 99 | -> | Minus |
3R | 10780049..10780202 | 417..570 | 100 | -> | Minus |
3R | 10780261..10780447 | 230..416 | 100 | -> | Minus |
3R | 10780516..10780731 | 11..229 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:17 Download gff for
BO16092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6605558..6605695 | 571..708 | 99 | -> | Minus |
arm_3R | 6605771..6605924 | 417..570 | 100 | -> | Minus |
arm_3R | 6605983..6606169 | 230..416 | 100 | -> | Minus |
arm_3R | 6606238..6606453 | 11..229 | 98 | | Minus |
BO16092.pep Sequence
Translation from 16 to 817
> BO16092.pep
MNRNYIVILQLLGVLVVLTYASAIPKYEDSHKFYADKAQRDRSYFNENKT
QPSEPQTASTKDRLERLGYTTGYGSLNGYPGGTGLSAYNPIKLDLGGVVL
GTLVGIGAIILIPKILSAFHGGYGGYGRSEDSDLTPLSSMINKIDDVLGQ
NNIDSTSCMQRAVCGYVRSTEYNMKIGSSDQMDEFIHMLAENALVDYLLD
GTAIKEALEHGKRANDRACEEVYSNCPLDSKSATDILMKLMPKKNPQGKG
KSSGISREKKVASFLDH
BO16092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-PA | 261 | CG14686-PA | 1..261 | 1..261 | 1349 | 100 | Plus |