Clone BO16093 Report

Search the DGRC for BO16093

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRap2l-RA
Protein status:BO16093.pep: Imported from assembly
Sequenced Size:580

Clone Sequence Records

BO16093.3prime Sequence

578 bp (552 high quality bases) assembled on 2006-06-16

> BO16093.3prime
ATGGTCTAGAAAGCTTGCTAAAAGCGTACAACAACAGTAATTTTTTTTTT
GCCGATTCTCTTGCGTCAAATTCATCTCTCGAACGATGGTGGCGAATACT
TCGTTTACGTTTATCCGATCCTTTGCAGATGCCTCGATAAATGGACAGTC
CCACAGTTGTGCCAAGGCATTACCTTCAGCGGTGGATACCTCTCTTTGGC
AATCTAAATCGAATTTGTTCGCGACTAGTAGGATGGGTGCTGGCTGACTT
CCTTTCACTCGAGTGATCACATTTTTCATACTAGAAATATCCTGAAATGT
TTGATGGTTCGTAAGTGAATACATTACAATAAAACCATGACCATTTTTAA
TGTAGAGATCTCTCATGGATGCGAATTGCTCTGTGCCCGCGGTGTCCAAT
ATTTCCAAGACGCACGGCGAGCTGTCCACCTCGATTTCCTTGCGGTAGAA
GTCCTCGATGGTGGGATCGTACTTTTCAATAAAGCATCCCGAGACGAATT
GCACTGTAAGGGCCGATTTACCAACTCCCCCCGACCCGAGCACAACAACT
TTGAATTCGCGCATGTCGACTGATAACT

BO16093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3204-PA 549 Rap2l-RA 1..546 564..19 2730 100 Minus
CG3204-PB 186 Rap2l-RB 1..137 564..428 685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-RA 1002 CG3204-RA 389..934 564..19 2730 100 Minus
Rap2l-RD 660 CG3204-RD 182..592 429..19 2055 100 Minus
Rap2l-RC 574 CG3204-RC 96..506 429..19 2055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24065181..24065337 175..19 785 100 Minus
2R 25286936 2R 24064732..24064872 431..291 705 100 Minus
2R 25286936 2R 24063439..24063575 564..428 685 100 Minus
2R 25286936 2R 24064990..24065113 294..171 620 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:04:43 has no hits.

BO16093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:12 Download gff for BO16093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3204-PA 1..549 18..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:15:53 Download gff for BO16093.3prime
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..934 19..564 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:35:49 Download gff for BO16093.3prime
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..934 19..564 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:35:49 Download gff for BO16093.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24065183..24065337 19..173 100   Minus
2R 24064734..24064871 292..429 100 -> Minus
2R 24064993..24065110 174..291 100 -> Minus
2R 24063439..24063573 430..564 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:15:53 Download gff for BO16093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19950962..19951096 430..564 100 -> Minus
arm_2R 19952257..19952394 292..429 100 -> Minus
arm_2R 19952516..19952633 174..291 100 -> Minus
arm_2R 19952706..19952860 19..173 100   Minus

BO16093.5prime Sequence

578 bp (578 high quality bases) assembled on 2006-06-16

> BO16093.5prime
GAAGTTATCAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGG
GGGGAGTTGGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTT
ATTGAAAAGTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGA
GGTGGACAGCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAG
AGCAATTCGCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTT
ATTGTAATGTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAG
TATGAAAAATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCC
TACTAGTCGCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACC
GCTGAAGGTAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGC
ATCTGCAAAGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTC
GAGAGATGAATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGT
TGTACGCTTTTAGCAAGCTTTCTAGACC

BO16093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3204-PA 549 Rap2l-RA 1..546 17..562 2730 100 Plus
CG3204-PB 186 Rap2l-RB 1..137 17..153 685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-RA 1002 CG3204-RA 389..934 17..562 2730 100 Plus
Rap2l-RD 660 CG3204-RD 182..592 152..562 2055 100 Plus
Rap2l-RC 574 CG3204-RC 96..506 152..562 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24065181..24065337 406..562 785 100 Plus
2R 25286936 2R 24064732..24064872 150..290 705 100 Plus
2R 25286936 2R 24063439..24063575 17..153 685 100 Plus
2R 25286936 2R 24064990..24065113 287..410 620 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:06:29 has no hits.

BO16093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:13 Download gff for BO16093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3204-PA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:53 Download gff for BO16093.5prime
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..934 17..562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:52 Download gff for BO16093.5prime
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..934 17..562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:52 Download gff for BO16093.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24065183..24065337 408..562 100   Plus
2R 24063439..24063573 17..151 100 -> Plus
2R 24064734..24064871 152..289 100 -> Plus
2R 24064993..24065110 290..407 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:53 Download gff for BO16093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19950962..19951096 17..151 100 -> Plus
arm_2R 19952257..19952394 152..289 100 -> Plus
arm_2R 19952516..19952633 290..407 100 -> Plus
arm_2R 19952706..19952860 408..562 100   Plus

BO16093.complete Sequence

580 bp assembled on 2008-08-15

GenBank Submission: FJ633716

> BO16093.complete
GAAGTTATCAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGG
GGGGAGTTGGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTT
ATTGAAAAGTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGA
GGTGGACAGCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAG
AGCAATTCGCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTT
ATTGTAATGTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAG
TATGAAAAATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCC
TACTAGTCGCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACC
GCTGAAGGTAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGC
ATCTGCAAAGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTC
GAGAGATGAATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGT
TGTACGCTTTTAGCAAGCTTTCTAGACCAT

BO16093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-RA 549 CG3204-PA 1..546 17..562 2730 100 Plus
Rap2l-RD 351 CG3204-PD 1..348 215..562 1740 100 Plus
Rap2l-RC 351 CG3204-PC 1..348 215..562 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-RA 1002 CG3204-RA 389..934 17..562 2730 100 Plus
Rap2l-RD 660 CG3204-RD 182..592 152..562 2055 100 Plus
Rap2l-RC 574 CG3204-RC 96..506 152..562 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24065181..24065337 406..562 785 100 Plus
2R 25286936 2R 24064732..24064872 150..290 705 100 Plus
2R 25286936 2R 24063439..24063575 17..153 685 100 Plus
2R 25286936 2R 24064990..24065113 287..410 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:45:02 has no hits.

BO16093.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:04 Download gff for BO16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 387..932 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:01 Download gff for BO16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..934 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:02 Download gff for BO16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 387..932 17..564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:25 Download gff for BO16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..934 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:25 Download gff for BO16093.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24063439..24063573 17..151 100 -> Plus
2R 24064734..24064871 152..289 100 -> Plus
2R 24064993..24065110 290..407 100 -> Plus
2R 24065183..24065337 408..564 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:01 Download gff for BO16093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19950962..19951096 17..151 100 -> Plus
arm_2R 19952257..19952394 152..289 100 -> Plus
arm_2R 19952516..19952633 290..407 100 -> Plus
arm_2R 19952706..19952860 408..564 98   Plus

BO16093.pep Sequence

Translation from 16 to 580

> BO16093.pep
MREFKVVVLGSGGVGKSALTVQFVSGCFIEKYDPTIEDFYRKEIEVDSSP
CVLEILDTAGTEQFASMRDLYIKNGHGFIVMYSLTNHQTFQDISSMKNVI
TRVKGSQPAPILLVANKFDLDCQREVSTAEGNALAQLWDCPFIEASAKDR
INVNEVFATIVREMNLTQENRQKKNYCCCTLLASFLDH

BO16093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-PA 182 CG3204-PA 1..182 1..182 945 100 Plus
Rap2l-PD 116 CG3204-PD 1..116 67..182 609 100 Plus
Rap2l-PC 116 CG3204-PC 1..116 67..182 609 100 Plus
R-PC 184 CG1956-PC 1..184 1..182 523 56 Plus
R-PB 184 CG1956-PB 1..184 1..182 523 56 Plus