Clone Sequence Records
BO16093.3prime Sequence
578 bp (552 high quality bases) assembled on 2006-06-16
> BO16093.3prime
ATGGTCTAGAAAGCTTGCTAAAAGCGTACAACAACAGTAATTTTTTTTTT
GCCGATTCTCTTGCGTCAAATTCATCTCTCGAACGATGGTGGCGAATACT
TCGTTTACGTTTATCCGATCCTTTGCAGATGCCTCGATAAATGGACAGTC
CCACAGTTGTGCCAAGGCATTACCTTCAGCGGTGGATACCTCTCTTTGGC
AATCTAAATCGAATTTGTTCGCGACTAGTAGGATGGGTGCTGGCTGACTT
CCTTTCACTCGAGTGATCACATTTTTCATACTAGAAATATCCTGAAATGT
TTGATGGTTCGTAAGTGAATACATTACAATAAAACCATGACCATTTTTAA
TGTAGAGATCTCTCATGGATGCGAATTGCTCTGTGCCCGCGGTGTCCAAT
ATTTCCAAGACGCACGGCGAGCTGTCCACCTCGATTTCCTTGCGGTAGAA
GTCCTCGATGGTGGGATCGTACTTTTCAATAAAGCATCCCGAGACGAATT
GCACTGTAAGGGCCGATTTACCAACTCCCCCCGACCCGAGCACAACAACT
TTGAATTCGCGCATGTCGACTGATAACT
BO16093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3204-PA | 549 | Rap2l-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
CG3204-PB | 186 | Rap2l-RB | 1..137 | 564..428 | 685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-RA | 1002 | CG3204-RA | 389..934 | 564..19 | 2730 | 100 | Minus |
Rap2l-RD | 660 | CG3204-RD | 182..592 | 429..19 | 2055 | 100 | Minus |
Rap2l-RC | 574 | CG3204-RC | 96..506 | 429..19 | 2055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24065181..24065337 | 175..19 | 785 | 100 | Minus |
2R | 25286936 | 2R | 24064732..24064872 | 431..291 | 705 | 100 | Minus |
2R | 25286936 | 2R | 24063439..24063575 | 564..428 | 685 | 100 | Minus |
2R | 25286936 | 2R | 24064990..24065113 | 294..171 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:04:43 has no hits.
BO16093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:12 Download gff for
BO16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3204-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:15:53 Download gff for
BO16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..934 | 19..564 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:35:49 Download gff for
BO16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..934 | 19..564 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:35:49 Download gff for
BO16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24065183..24065337 | 19..173 | 100 | | Minus |
2R | 24064734..24064871 | 292..429 | 100 | -> | Minus |
2R | 24064993..24065110 | 174..291 | 100 | -> | Minus |
2R | 24063439..24063573 | 430..564 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:15:53 Download gff for
BO16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19950962..19951096 | 430..564 | 100 | -> | Minus |
arm_2R | 19952257..19952394 | 292..429 | 100 | -> | Minus |
arm_2R | 19952516..19952633 | 174..291 | 100 | -> | Minus |
arm_2R | 19952706..19952860 | 19..173 | 100 | | Minus |
BO16093.5prime Sequence
578 bp (578 high quality bases) assembled on 2006-06-16
> BO16093.5prime
GAAGTTATCAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGG
GGGGAGTTGGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTT
ATTGAAAAGTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGA
GGTGGACAGCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAG
AGCAATTCGCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTT
ATTGTAATGTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAG
TATGAAAAATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCC
TACTAGTCGCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACC
GCTGAAGGTAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGC
ATCTGCAAAGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTC
GAGAGATGAATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGT
TGTACGCTTTTAGCAAGCTTTCTAGACC
BO16093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3204-PA | 549 | Rap2l-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG3204-PB | 186 | Rap2l-RB | 1..137 | 17..153 | 685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-RA | 1002 | CG3204-RA | 389..934 | 17..562 | 2730 | 100 | Plus |
Rap2l-RD | 660 | CG3204-RD | 182..592 | 152..562 | 2055 | 100 | Plus |
Rap2l-RC | 574 | CG3204-RC | 96..506 | 152..562 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24065181..24065337 | 406..562 | 785 | 100 | Plus |
2R | 25286936 | 2R | 24064732..24064872 | 150..290 | 705 | 100 | Plus |
2R | 25286936 | 2R | 24063439..24063575 | 17..153 | 685 | 100 | Plus |
2R | 25286936 | 2R | 24064990..24065113 | 287..410 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:06:29 has no hits.
BO16093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:13 Download gff for
BO16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3204-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:53 Download gff for
BO16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..934 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:52 Download gff for
BO16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..934 | 17..562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:52 Download gff for
BO16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24065183..24065337 | 408..562 | 100 | | Plus |
2R | 24063439..24063573 | 17..151 | 100 | -> | Plus |
2R | 24064734..24064871 | 152..289 | 100 | -> | Plus |
2R | 24064993..24065110 | 290..407 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:53 Download gff for
BO16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19950962..19951096 | 17..151 | 100 | -> | Plus |
arm_2R | 19952257..19952394 | 152..289 | 100 | -> | Plus |
arm_2R | 19952516..19952633 | 290..407 | 100 | -> | Plus |
arm_2R | 19952706..19952860 | 408..562 | 100 | | Plus |
BO16093.complete Sequence
580 bp assembled on 2008-08-15
GenBank Submission: FJ633716
> BO16093.complete
GAAGTTATCAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGG
GGGGAGTTGGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTT
ATTGAAAAGTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGA
GGTGGACAGCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAG
AGCAATTCGCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTT
ATTGTAATGTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAG
TATGAAAAATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCC
TACTAGTCGCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACC
GCTGAAGGTAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGC
ATCTGCAAAGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTC
GAGAGATGAATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGT
TGTACGCTTTTAGCAAGCTTTCTAGACCAT
BO16093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-RA | 549 | CG3204-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Rap2l-RD | 351 | CG3204-PD | 1..348 | 215..562 | 1740 | 100 | Plus |
Rap2l-RC | 351 | CG3204-PC | 1..348 | 215..562 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-RA | 1002 | CG3204-RA | 389..934 | 17..562 | 2730 | 100 | Plus |
Rap2l-RD | 660 | CG3204-RD | 182..592 | 152..562 | 2055 | 100 | Plus |
Rap2l-RC | 574 | CG3204-RC | 96..506 | 152..562 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24065181..24065337 | 406..562 | 785 | 100 | Plus |
2R | 25286936 | 2R | 24064732..24064872 | 150..290 | 705 | 100 | Plus |
2R | 25286936 | 2R | 24063439..24063575 | 17..153 | 685 | 100 | Plus |
2R | 25286936 | 2R | 24064990..24065113 | 287..410 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:45:02 has no hits.
BO16093.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:04 Download gff for
BO16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 387..932 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:01 Download gff for
BO16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..934 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:02 Download gff for
BO16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 387..932 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:25 Download gff for
BO16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..934 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:25 Download gff for
BO16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24063439..24063573 | 17..151 | 100 | -> | Plus |
2R | 24064734..24064871 | 152..289 | 100 | -> | Plus |
2R | 24064993..24065110 | 290..407 | 100 | -> | Plus |
2R | 24065183..24065337 | 408..564 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:01 Download gff for
BO16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19950962..19951096 | 17..151 | 100 | -> | Plus |
arm_2R | 19952257..19952394 | 152..289 | 100 | -> | Plus |
arm_2R | 19952516..19952633 | 290..407 | 100 | -> | Plus |
arm_2R | 19952706..19952860 | 408..564 | 98 | | Plus |
BO16093.pep Sequence
Translation from 16 to 580
> BO16093.pep
MREFKVVVLGSGGVGKSALTVQFVSGCFIEKYDPTIEDFYRKEIEVDSSP
CVLEILDTAGTEQFASMRDLYIKNGHGFIVMYSLTNHQTFQDISSMKNVI
TRVKGSQPAPILLVANKFDLDCQREVSTAEGNALAQLWDCPFIEASAKDR
INVNEVFATIVREMNLTQENRQKKNYCCCTLLASFLDH
BO16093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-PA | 182 | CG3204-PA | 1..182 | 1..182 | 945 | 100 | Plus |
Rap2l-PD | 116 | CG3204-PD | 1..116 | 67..182 | 609 | 100 | Plus |
Rap2l-PC | 116 | CG3204-PC | 1..116 | 67..182 | 609 | 100 | Plus |
R-PC | 184 | CG1956-PC | 1..184 | 1..182 | 523 | 56 | Plus |
R-PB | 184 | CG1956-PB | 1..184 | 1..182 | 523 | 56 | Plus |