Clone Sequence Records
BO16094.3prime Sequence
539 bp (525 high quality bases) assembled on 2006-06-16
> BO16094.3prime
ATGGTCTAGAAAGCTTGCCCAAAATAGACCATTAAGGGTGTTAGTTACCT
GGGCAACGGTCTGTTCGGCAATGGGAATGTCATCGTTGCGCAGATCAACG
CGTTTCACCACCGACGAGGGATCCGCATCCAGAATAATGCCTCCGTCGCA
GATCTCGTCAAATGCCAGCATGATGATCTCCAGGTTTTCCAGCACCAGGC
GCTTCTCAACGTTCTTCTTGAGGATCAGGCTAATGGAATCGTAGAGGCAG
TTGAGCACGGACAGCAGGATGAGCTCGTTCTCGTAGGCGTTGCCCATCAC
GTAGAAGAAGAGGTCCACGTTGCTCTTGTACACGCAGGTGAGTCCGTCCA
GCATAATGATCTCCGTGTTGGAGCGGTGCGTCTTATTGAACAGATTCTTT
TCGAAGGCCTTCTGCTCCTTCAACGTGGACAGGATGTTCTTGTCGTATTA
CTTGGCCAGGATGCGGTTGCCATCGTTGTCCATGATGCACATGCCCTTGA
TGATATCCATCATAAATCCGTCCATGTCCACTGATAACT
BO16094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3948-PB | 510 | zetaCOP-RB | 1..507 | 525..19 | 2510 | 99.8 | Minus |
CG3948-PA | 525 | zetaCOP-RA | 1..479 | 525..47 | 2370 | 99.7 | Minus |
CG3948-PC | 492 | zetaCOP-RC | 1..446 | 492..47 | 2205 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RB | 1030 | CG3948-RB | 32..545 | 532..19 | 2525 | 99.4 | Minus |
zetaCOP-RA | 694 | CG3948-RA | 32..517 | 532..47 | 2385 | 99.4 | Minus |
zetaCOP-RC | 671 | CG3948-RC | 34..494 | 507..47 | 2290 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16673057..16673425 | 140..508 | 1830 | 99.7 | Plus |
3L | 28110227 | 3L | 16672424..16672545 | 19..140 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:48:04 has no hits.
BO16094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:13 Download gff for
BO16094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3948-PB | 1..510 | 18..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:23:57 Download gff for
BO16094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..545 | 19..532 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:03 Download gff for
BO16094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..545 | 19..532 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:03 Download gff for
BO16094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16673482..16673506 | 508..532 | 92 | | Plus |
3L | 16672424..16672544 | 19..139 | 100 | <- | Plus |
3L | 16673057..16673424 | 140..507 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:23:57 Download gff for
BO16094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16665524..16665644 | 19..139 | 100 | <- | Plus |
arm_3L | 16666157..16666524 | 140..507 | 99 | <- | Plus |
arm_3L | 16666582..16666606 | 508..532 | 92 | | Plus |
BO16094.5prime Sequence
539 bp (539 high quality bases) assembled on 2006-06-16
> BO16094.5prime
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTA
ACACCCTTAATGGTCTATTTTGGGCAAGCTTTCTAGACC
BO16094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3948-PB | 510 | zetaCOP-RB | 1..507 | 17..523 | 2535 | 100 | Plus |
CG3948-PA | 525 | zetaCOP-RA | 1..479 | 17..495 | 2395 | 100 | Plus |
CG3948-PC | 492 | zetaCOP-RC | 1..446 | 50..495 | 2230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RB | 1030 | CG3948-RB | 39..545 | 17..523 | 2535 | 100 | Plus |
zetaCOP-RA | 694 | CG3948-RA | 39..517 | 17..495 | 2395 | 100 | Plus |
zetaCOP-RC | 671 | CG3948-RC | 34..494 | 35..495 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16673057..16673425 | 402..34 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 16672424..16672545 | 523..402 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:35:26 has no hits.
BO16094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:14 Download gff for
BO16094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3948-PB | 1..510 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:31:06 Download gff for
BO16094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..545 | 10..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:35 Download gff for
BO16094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..545 | 10..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:35 Download gff for
BO16094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16672424..16672544 | 403..523 | 100 | <- | Minus |
3L | 16673057..16673424 | 35..402 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:31:06 Download gff for
BO16094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16665524..16665644 | 403..523 | 100 | <- | Minus |
arm_3L | 16666157..16666524 | 35..402 | 100 | <- | Minus |
BO16094.complete Sequence
541 bp assembled on 2008-08-15
GenBank Submission: FJ633717
> BO16094.complete
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTA
ACACCCTTAATGGTCTATTTTGGGCAAGCTTTCTAGACCAT
BO16094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RB | 510 | CG3948-PB | 1..507 | 17..523 | 2535 | 100 | Plus |
zetaCOP-RA | 525 | CG3948-PA | 1..479 | 17..495 | 2395 | 100 | Plus |
zetaCOP-RC | 492 | CG3948-PC | 1..446 | 50..495 | 2230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RB | 1030 | CG3948-RB | 39..545 | 17..523 | 2535 | 100 | Plus |
zetaCOP-RA | 694 | CG3948-RA | 39..517 | 17..495 | 2395 | 100 | Plus |
zetaCOP-RC | 671 | CG3948-RC | 34..494 | 35..495 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16673057..16673425 | 402..34 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 16672424..16672545 | 523..402 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:10 has no hits.
BO16094.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:02 Download gff for
BO16094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..545 | 10..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:16 Download gff for
BO16094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 39..545 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:33 Download gff for
BO16094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 34..540 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:20 Download gff for
BO16094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 39..545 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:20 Download gff for
BO16094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16673057..16673424 | 35..402 | 100 | <- | Minus |
3L | 16673482..16673499 | 17..34 | 100 | | Minus |
3L | 16672422..16672544 | 403..525 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:16 Download gff for
BO16094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16665522..16665644 | 403..525 | 98 | <- | Minus |
arm_3L | 16666157..16666524 | 35..402 | 100 | <- | Minus |
arm_3L | 16666582..16666599 | 17..34 | 100 | | Minus |
BO16094.pep Sequence
Translation from 16 to 541
> BO16094.pep
MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH
RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL
ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI
PIAEQTVAQVTNTLNGLFWASFLDH
BO16094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-PB | 169 | CG3948-PB | 1..169 | 1..169 | 866 | 100 | Plus |
zetaCOP-PA | 174 | CG3948-PA | 1..160 | 1..160 | 813 | 100 | Plus |
zetaCOP-PC | 163 | CG3948-PC | 1..149 | 12..160 | 755 | 100 | Plus |