Clone BO16094 Report

Search the DGRC for BO16094

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptzetaCOP-RB
Protein status:BO16094.pep: Imported from assembly
Sequenced Size:541

Clone Sequence Records

BO16094.3prime Sequence

539 bp (525 high quality bases) assembled on 2006-06-16

> BO16094.3prime
ATGGTCTAGAAAGCTTGCCCAAAATAGACCATTAAGGGTGTTAGTTACCT
GGGCAACGGTCTGTTCGGCAATGGGAATGTCATCGTTGCGCAGATCAACG
CGTTTCACCACCGACGAGGGATCCGCATCCAGAATAATGCCTCCGTCGCA
GATCTCGTCAAATGCCAGCATGATGATCTCCAGGTTTTCCAGCACCAGGC
GCTTCTCAACGTTCTTCTTGAGGATCAGGCTAATGGAATCGTAGAGGCAG
TTGAGCACGGACAGCAGGATGAGCTCGTTCTCGTAGGCGTTGCCCATCAC
GTAGAAGAAGAGGTCCACGTTGCTCTTGTACACGCAGGTGAGTCCGTCCA
GCATAATGATCTCCGTGTTGGAGCGGTGCGTCTTATTGAACAGATTCTTT
TCGAAGGCCTTCTGCTCCTTCAACGTGGACAGGATGTTCTTGTCGTATTA
CTTGGCCAGGATGCGGTTGCCATCGTTGTCCATGATGCACATGCCCTTGA
TGATATCCATCATAAATCCGTCCATGTCCACTGATAACT

BO16094.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3948-PB 510 zetaCOP-RB 1..507 525..19 2510 99.8 Minus
CG3948-PA 525 zetaCOP-RA 1..479 525..47 2370 99.7 Minus
CG3948-PC 492 zetaCOP-RC 1..446 492..47 2205 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 1030 CG3948-RB 32..545 532..19 2525 99.4 Minus
zetaCOP-RA 694 CG3948-RA 32..517 532..47 2385 99.4 Minus
zetaCOP-RC 671 CG3948-RC 34..494 507..47 2290 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16673057..16673425 140..508 1830 99.7 Plus
3L 28110227 3L 16672424..16672545 19..140 610 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:48:04 has no hits.

BO16094.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:13 Download gff for BO16094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3948-PB 1..510 18..525 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:23:57 Download gff for BO16094.3prime
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..545 19..532 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:03 Download gff for BO16094.3prime
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..545 19..532 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:03 Download gff for BO16094.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16673482..16673506 508..532 92   Plus
3L 16672424..16672544 19..139 100 <- Plus
3L 16673057..16673424 140..507 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:23:57 Download gff for BO16094.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16665524..16665644 19..139 100 <- Plus
arm_3L 16666157..16666524 140..507 99 <- Plus
arm_3L 16666582..16666606 508..532 92   Plus

BO16094.5prime Sequence

539 bp (539 high quality bases) assembled on 2006-06-16

> BO16094.5prime
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTA
ACACCCTTAATGGTCTATTTTGGGCAAGCTTTCTAGACC

BO16094.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3948-PB 510 zetaCOP-RB 1..507 17..523 2535 100 Plus
CG3948-PA 525 zetaCOP-RA 1..479 17..495 2395 100 Plus
CG3948-PC 492 zetaCOP-RC 1..446 50..495 2230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 1030 CG3948-RB 39..545 17..523 2535 100 Plus
zetaCOP-RA 694 CG3948-RA 39..517 17..495 2395 100 Plus
zetaCOP-RC 671 CG3948-RC 34..494 35..495 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16673057..16673425 402..34 1845 100 Minus
3L 28110227 3L 16672424..16672545 523..402 610 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:35:26 has no hits.

BO16094.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:14 Download gff for BO16094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3948-PB 1..510 17..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:31:06 Download gff for BO16094.5prime
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..545 10..523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:35 Download gff for BO16094.5prime
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..545 10..523 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:35 Download gff for BO16094.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16672424..16672544 403..523 100 <- Minus
3L 16673057..16673424 35..402 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:31:06 Download gff for BO16094.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16665524..16665644 403..523 100 <- Minus
arm_3L 16666157..16666524 35..402 100 <- Minus

BO16094.complete Sequence

541 bp assembled on 2008-08-15

GenBank Submission: FJ633717

> BO16094.complete
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTA
ACACCCTTAATGGTCTATTTTGGGCAAGCTTTCTAGACCAT

BO16094.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 510 CG3948-PB 1..507 17..523 2535 100 Plus
zetaCOP-RA 525 CG3948-PA 1..479 17..495 2395 100 Plus
zetaCOP-RC 492 CG3948-PC 1..446 50..495 2230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 1030 CG3948-RB 39..545 17..523 2535 100 Plus
zetaCOP-RA 694 CG3948-RA 39..517 17..495 2395 100 Plus
zetaCOP-RC 671 CG3948-RC 34..494 35..495 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16673057..16673425 402..34 1845 100 Minus
3L 28110227 3L 16672424..16672545 523..402 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:02:10 has no hits.

BO16094.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:02 Download gff for BO16094.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..545 10..523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:16 Download gff for BO16094.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 39..545 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:33 Download gff for BO16094.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 34..540 17..525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:20 Download gff for BO16094.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 39..545 17..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:20 Download gff for BO16094.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16673057..16673424 35..402 100 <- Minus
3L 16673482..16673499 17..34 100   Minus
3L 16672422..16672544 403..525 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:16 Download gff for BO16094.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16665522..16665644 403..525 98 <- Minus
arm_3L 16666157..16666524 35..402 100 <- Minus
arm_3L 16666582..16666599 17..34 100   Minus

BO16094.pep Sequence

Translation from 16 to 541

> BO16094.pep
MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH
RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL
ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI
PIAEQTVAQVTNTLNGLFWASFLDH

BO16094.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-PB 169 CG3948-PB 1..169 1..169 866 100 Plus
zetaCOP-PA 174 CG3948-PA 1..160 1..160 813 100 Plus
zetaCOP-PC 163 CG3948-PC 1..149 12..160 755 100 Plus