Clone Sequence Records
BO16096.3prime Sequence
446 bp (446 high quality bases) assembled on 2006-06-16
> BO16096.3prime
ATGGTCTAGAAAGCTTGCCTTGAGCTTGGCTTTCAGCCACTCCTCGGTGA
GTTCGTCTAGTTCGCGTATCTCGTAGACGCGTGTGAGATCTACTTCGCGC
TGAAGAGCGCTCTTCGTGCAGGCGTACATCATCTGCAATTCGATCTGGCT
ATCCCTGGGTGTGTAGAATATGAAGCACATTGGGTACGAAATGCGCTGAT
CGTCATGGACCATTTTATACGTATAGATGACATATCGGGGCTGGTGTCCT
GGCAATGTATCCTGCAGCTCGTCCACCGAAATATCGTCGATGAACTCGTC
CAGCACCACCGTTTGCTTCTCCCGGTCGACTTTCAATATCAAAGCCGCAT
TATTTTTGCTCTTGCTGAATCGAAACTTCTTCAATTCCTCCAGAACTTCG
TTGCTTATGTCGCATATCTGGTTATCACTCATGTCGACTGATAACT
BO16096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-PA | 417 | CG5869-RA | 1..414 | 432..19 | 2070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-RA | 1019 | CG5869-RA | 182..595 | 432..19 | 2070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16302261..16302451 | 145..335 | 955 | 100 | Plus |
2L | 23513712 | 2L | 16302080..16302208 | 19..147 | 645 | 100 | Plus |
2L | 23513712 | 2L | 16302518..16302612 | 336..430 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 06:41:59 has no hits.
BO16096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:15 Download gff for
BO16096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-PA | 1..417 | 18..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:13:09 Download gff for
BO16096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 178..595 | 19..439 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:44:21 Download gff for
BO16096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 178..595 | 19..439 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:44:21 Download gff for
BO16096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16302080..16302205 | 19..144 | 100 | <- | Plus |
2L | 16302261..16302451 | 145..335 | 100 | <- | Plus |
2L | 16302518..16302621 | 336..444 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:13:09 Download gff for
BO16096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16302080..16302205 | 19..144 | 100 | <- | Plus |
arm_2L | 16302261..16302451 | 145..335 | 100 | <- | Plus |
arm_2L | 16302518..16302621 | 336..444 | 95 | | Plus |
BO16096.5prime Sequence
446 bp (446 high quality bases) assembled on 2006-06-16
> BO16096.5prime
GAAGTTATCAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACG
AAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAAT
GCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGA
CGAGTTCATCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAG
GACACCAGCCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGAT
CAGCGCATTTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAG
CCAGATCGAATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGC
GCGAAGTAGATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTC
ACCGAGGAGTGGCTGAAAGCCAAGCTCAAGGCAAGCTTTCTAGACC
BO16096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-PA | 417 | CG5869-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-RA | 1019 | CG5869-RA | 182..595 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16302261..16302451 | 304..114 | 955 | 100 | Minus |
2L | 23513712 | 2L | 16302080..16302208 | 430..302 | 645 | 100 | Minus |
2L | 23513712 | 2L | 16302518..16302612 | 113..19 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 08:24:48 has no hits.
BO16096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:16 Download gff for
BO16096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-PA | 1..417 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:54:59 Download gff for
BO16096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 178..595 | 10..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:18 Download gff for
BO16096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 178..595 | 10..430 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:18 Download gff for
BO16096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16302261..16302451 | 114..304 | 100 | <- | Minus |
2L | 16302518..16302621 | 5..113 | 95 | | Minus |
2L | 16302080..16302205 | 305..430 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:54:59 Download gff for
BO16096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16302080..16302205 | 305..430 | 100 | <- | Minus |
arm_2L | 16302261..16302451 | 114..304 | 100 | <- | Minus |
arm_2L | 16302518..16302621 | 5..113 | 95 | | Minus |
BO16096.complete Sequence
448 bp assembled on 2008-08-15
GenBank Submission: FJ633718
> BO16096.complete
GAAGTTATCAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACG
AAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAAT
GCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGA
CGAGTTCATCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAG
GACACCAGCCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGAT
CAGCGCATTTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAG
CCAGATCGAATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGC
GCGAAGTAGATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTC
ACCGAGGAGTGGCTGAAAGCCAAGCTCAAGGCAAGCTTTCTAGACCAT
BO16096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-RA | 417 | CG5869-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-RA | 1019 | CG5869-RA | 182..595 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16302261..16302451 | 304..114 | 955 | 100 | Minus |
2L | 23513712 | 2L | 16302080..16302208 | 430..302 | 645 | 100 | Minus |
2L | 23513712 | 2L | 16302518..16302612 | 113..19 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:33:32 has no hits.
BO16096.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:20 Download gff for
BO16096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 176..593 | 10..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:01:05 Download gff for
BO16096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 182..595 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:52 Download gff for
BO16096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 180..593 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:14 Download gff for
BO16096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 182..595 | 17..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:14 Download gff for
BO16096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16302078..16302205 | 305..432 | 98 | <- | Minus |
2L | 16302261..16302451 | 114..304 | 100 | <- | Minus |
2L | 16302518..16302613 | 17..113 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:01:05 Download gff for
BO16096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16302078..16302205 | 305..432 | 98 | <- | Minus |
arm_2L | 16302261..16302451 | 114..304 | 100 | <- | Minus |
arm_2L | 16302518..16302613 | 17..113 | 98 | | Minus |
BO16096.pep Sequence
Translation from 16 to 448
> BO16096.pep
MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDD
ISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQ
MMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLKASFLDH
BO16096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-PA | 138 | CG5869-PA | 1..138 | 1..138 | 713 | 100 | Plus |