Clone BO16096 Report

Search the DGRC for BO16096

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:160
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG5869-RA
Protein status:BO16096.pep: Imported from assembly
Sequenced Size:448

Clone Sequence Records

BO16096.3prime Sequence

446 bp (446 high quality bases) assembled on 2006-06-16

> BO16096.3prime
ATGGTCTAGAAAGCTTGCCTTGAGCTTGGCTTTCAGCCACTCCTCGGTGA
GTTCGTCTAGTTCGCGTATCTCGTAGACGCGTGTGAGATCTACTTCGCGC
TGAAGAGCGCTCTTCGTGCAGGCGTACATCATCTGCAATTCGATCTGGCT
ATCCCTGGGTGTGTAGAATATGAAGCACATTGGGTACGAAATGCGCTGAT
CGTCATGGACCATTTTATACGTATAGATGACATATCGGGGCTGGTGTCCT
GGCAATGTATCCTGCAGCTCGTCCACCGAAATATCGTCGATGAACTCGTC
CAGCACCACCGTTTGCTTCTCCCGGTCGACTTTCAATATCAAAGCCGCAT
TATTTTTGCTCTTGCTGAATCGAAACTTCTTCAATTCCTCCAGAACTTCG
TTGCTTATGTCGCATATCTGGTTATCACTCATGTCGACTGATAACT

BO16096.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-PA 417 CG5869-RA 1..414 432..19 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-RA 1019 CG5869-RA 182..595 432..19 2070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16302261..16302451 145..335 955 100 Plus
2L 23513712 2L 16302080..16302208 19..147 645 100 Plus
2L 23513712 2L 16302518..16302612 336..430 475 100 Plus
Blast to na_te.dros performed on 2015-01-31 06:41:59 has no hits.

BO16096.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:15 Download gff for BO16096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-PA 1..417 18..432 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:13:09 Download gff for BO16096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 178..595 19..439 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:44:21 Download gff for BO16096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 178..595 19..439 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:44:21 Download gff for BO16096.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16302080..16302205 19..144 100 <- Plus
2L 16302261..16302451 145..335 100 <- Plus
2L 16302518..16302621 336..444 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:13:09 Download gff for BO16096.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16302080..16302205 19..144 100 <- Plus
arm_2L 16302261..16302451 145..335 100 <- Plus
arm_2L 16302518..16302621 336..444 95   Plus

BO16096.5prime Sequence

446 bp (446 high quality bases) assembled on 2006-06-16

> BO16096.5prime
GAAGTTATCAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACG
AAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAAT
GCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGA
CGAGTTCATCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAG
GACACCAGCCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGAT
CAGCGCATTTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAG
CCAGATCGAATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGC
GCGAAGTAGATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTC
ACCGAGGAGTGGCTGAAAGCCAAGCTCAAGGCAAGCTTTCTAGACC

BO16096.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-PA 417 CG5869-RA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-RA 1019 CG5869-RA 182..595 17..430 2070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16302261..16302451 304..114 955 100 Minus
2L 23513712 2L 16302080..16302208 430..302 645 100 Minus
2L 23513712 2L 16302518..16302612 113..19 475 100 Minus
Blast to na_te.dros performed on 2015-02-11 08:24:48 has no hits.

BO16096.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:16 Download gff for BO16096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-PA 1..417 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:54:59 Download gff for BO16096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 178..595 10..430 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:18 Download gff for BO16096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 178..595 10..430 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:18 Download gff for BO16096.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16302261..16302451 114..304 100 <- Minus
2L 16302518..16302621 5..113 95   Minus
2L 16302080..16302205 305..430 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:54:59 Download gff for BO16096.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16302080..16302205 305..430 100 <- Minus
arm_2L 16302261..16302451 114..304 100 <- Minus
arm_2L 16302518..16302621 5..113 95   Minus

BO16096.complete Sequence

448 bp assembled on 2008-08-15

GenBank Submission: FJ633718

> BO16096.complete
GAAGTTATCAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACG
AAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAAT
GCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGA
CGAGTTCATCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAG
GACACCAGCCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGAT
CAGCGCATTTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAG
CCAGATCGAATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGC
GCGAAGTAGATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTC
ACCGAGGAGTGGCTGAAAGCCAAGCTCAAGGCAAGCTTTCTAGACCAT

BO16096.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-RA 417 CG5869-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-RA 1019 CG5869-RA 182..595 17..430 2070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16302261..16302451 304..114 955 100 Minus
2L 23513712 2L 16302080..16302208 430..302 645 100 Minus
2L 23513712 2L 16302518..16302612 113..19 475 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:33:32 has no hits.

BO16096.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:20 Download gff for BO16096.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 176..593 10..430 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:01:05 Download gff for BO16096.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 182..595 17..432 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:52 Download gff for BO16096.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 180..593 17..432 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:14 Download gff for BO16096.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 182..595 17..432 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:14 Download gff for BO16096.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16302078..16302205 305..432 98 <- Minus
2L 16302261..16302451 114..304 100 <- Minus
2L 16302518..16302613 17..113 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:01:05 Download gff for BO16096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16302078..16302205 305..432 98 <- Minus
arm_2L 16302261..16302451 114..304 100 <- Minus
arm_2L 16302518..16302613 17..113 98   Minus

BO16096.pep Sequence

Translation from 16 to 448

> BO16096.pep
MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDD
ISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQ
MMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLKASFLDH

BO16096.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-PA 138 CG5869-PA 1..138 1..138 713 100 Plus