Clone Sequence Records
BO16108.5prime Sequence
296 bp (296 high quality bases) assembled on 2006-06-16
> BO16108.5prime
GAAGTTATCAGTCGACATGAAATCGGTCACGTTCGTACTCTGCCTGCTCG
TTCTGGGCGCCCACTCGCTGCTGGTGTTCGCCGTGGATTGCGAGATCGGT
GGGCATCAGTTCAAGACCGGAGAGAAGTACACGCCGGAAGGTCGCTGCCT
GCAGTACACCTGCCAGGCACCCAAACAGGTGACTGCCTTGGGATGCCCGG
CCATCGCCTCCTTGAAGCCCTGCAAAATGGAAGAGGATCTGAGCAAACCC
TATCCCGGCTGCTGTCCCAAGTTCAACTGCGCAAGCTTTCTAGACC
BO16108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32667-PA | 267 | CG32667-RA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-RA | 368 | CG32667-RA | 20..283 | 17..280 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11140001..11140110 | 192..83 | 550 | 100 | Minus |
X | 23542271 | X | 11139847..11139935 | 280..192 | 445 | 100 | Minus |
X | 23542271 | X | 11140178..11140244 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:09:18 has no hits.
BO16108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:23 Download gff for
BO16108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-PA | 1..267 | 17..283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:19:09 Download gff for
BO16108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 14..289 | 9..284 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:46 Download gff for
BO16108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp7-RA | 14..289 | 9..284 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:46 Download gff for
BO16108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11139841..11139934 | 193..284 | 97 | <- | Minus |
X | 11140001..11140109 | 84..192 | 100 | <- | Minus |
X | 11140178..11140250 | 9..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:19:09 Download gff for
BO16108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11033874..11033967 | 193..284 | 97 | <- | Minus |
arm_X | 11034034..11034142 | 84..192 | 100 | <- | Minus |
arm_X | 11034211..11034283 | 9..83 | 94 | | Minus |
BO16108.complete Sequence
298 bp assembled on 2008-08-15
GenBank Submission: FJ633719
> BO16108.complete
GAAGTTATCAGTCGACATGAAATCGGTCACGTTCGTACTCTGCCTGCTCG
TTCTGGGCGCCCACTCGCTGCTGGTGTTCGCCGTGGATTGCGAGATCGGT
GGGCATCAGTTCAAGACCGGAGAGAAGTACACGCCGGAAGGTCGCTGCCT
GCAGTACACCTGCCAGGCACCCAAACAGGTGACTGCCTTGGGATGCCCGG
CCATCGCCTCCTTGAAGCCCTGCAAAATGGAAGAGGATCTGAGCAAACCC
TATCCCGGCTGCTGTCCCAAGTTCAACTGCGCAAGCTTTCTAGACCAT
BO16108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-RA | 267 | CG32667-PA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-RA | 368 | CG32667-RA | 20..283 | 17..280 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11140001..11140110 | 192..83 | 550 | 100 | Minus |
X | 23542271 | X | 11139847..11139935 | 280..192 | 445 | 100 | Minus |
X | 23542271 | X | 11140178..11140244 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:08:51 has no hits.
BO16108.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:19 Download gff for
BO16108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 14..289 | 9..284 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:20 Download gff for
BO16108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 20..283 | 17..282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:00 Download gff for
BO16108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32667-RA | 20..283 | 17..282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:45 Download gff for
BO16108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp7-RA | 20..283 | 17..282 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:45 Download gff for
BO16108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11139843..11139934 | 193..282 | 97 | <- | Minus |
X | 11140001..11140109 | 84..192 | 100 | <- | Minus |
X | 11140178..11140244 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:20 Download gff for
BO16108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11034211..11034277 | 17..83 | 100 | | Minus |
arm_X | 11033876..11033967 | 193..282 | 97 | <- | Minus |
arm_X | 11034034..11034142 | 84..192 | 100 | <- | Minus |
BO16108.pep Sequence
Translation from 16 to 298
> BO16108.pep
MKSVTFVLCLLVLGAHSLLVFAVDCEIGGHQFKTGEKYTPEGRCLQYTCQ
APKQVTALGCPAIASLKPCKMEEDLSKPYPGCCPKFNCASFLDH
BO16108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp7-PA | 88 | CG32667-PA | 1..88 | 1..88 | 488 | 100 | Plus |