Clone BO16110 Report

Search the DGRC for BO16110

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:161
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG31775-RA
Protein status:BO16110.pep: Imported from assembly
Sequenced Size:301

Clone Sequence Records

BO16110.5prime Sequence

299 bp (299 high quality bases) assembled on 2006-06-16

> BO16110.5prime
GAAGTTATCAGTCGACATGAAGTTTTTGATCCTCTTCATTGCCCTATTCG
CCGCGGCCGCTGCCCTACCTCAGTTTGGATTCGGCGGTGGATTCGGTGAT
CAGCAGCAGCAGCAGCAAGGAGGATTTGGAGGTGGATTTGGTGATCAGCA
GCAGCAGCAAGGAGGATTTGGCGGTGGATTCGGAGGTGGATTCGGTGATC
AGCAGCAGCAGCAGCAAGGGGGATTTGGAGGTGGATTCGGAGGTGGATTC
GGTGATCAGCAGCAGCAACAGCAACAAGGCTGGGCAAGCTTTCTAGACC

BO16110.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31775-PA 270 CG31775-RA 1..267 17..283 1310 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31775-RB 371 CG31775-RB 39..306 16..283 1325 99.6 Plus
CG31775-RA 613 CG31775-RA 39..306 16..283 1325 99.6 Plus
CG42586-RB 613 CG42586-RB 39..306 16..283 1325 99.6 Plus
CG31775-RB 371 CG31775-RB 145..297 77..217 415 85.6 Plus
CG31775-RA 613 CG31775-RA 145..297 77..217 415 85.6 Plus
CG31775-RB 371 CG31775-RB 100..240 122..274 400 85 Plus
CG31775-RA 613 CG31775-RA 100..240 122..274 400 85 Plus
CG31775-RB 371 CG31775-RB 198..260 76..138 300 98.4 Plus
CG31775-RA 613 CG31775-RA 198..260 76..138 300 98.4 Plus
CG31775-RB 371 CG31775-RB 99..161 175..237 285 96.8 Plus
CG31775-RA 613 CG31775-RA 99..161 175..237 285 96.8 Plus
CG31775-RB 371 CG31775-RB 99..141 232..274 185 95.3 Plus
CG31775-RB 371 CG31775-RB 255..297 76..118 185 95.3 Plus
CG31775-RA 613 CG31775-RA 99..141 232..274 185 95.3 Plus
CG31775-RA 613 CG31775-RA 255..297 76..118 185 95.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14737397..14737652 283..28 1265 99.6 Minus
2L 23513712 2L 14741468..14741723 283..28 1265 99.6 Minus
2L 23513712 2L 14737406..14737558 217..77 365 85.6 Minus
2L 23513712 2L 14741477..14741629 217..77 365 85.6 Minus
2L 23513712 2L 14737463..14737603 274..122 350 85 Minus
2L 23513712 2L 14741534..14741674 274..122 350 85 Minus
2L 23513712 2L 14737443..14737505 138..76 300 98.4 Minus
2L 23513712 2L 14741514..14741576 138..76 300 98.4 Minus
2L 23513712 2L 14737542..14737604 237..175 285 96.8 Minus
2L 23513712 2L 14741613..14741675 237..175 285 96.8 Minus
2L 23513712 2L 14737406..14737448 118..76 185 95.3 Minus
2L 23513712 2L 14737562..14737604 274..232 185 95.3 Minus
2L 23513712 2L 14741477..14741519 118..76 185 95.3 Minus
2L 23513712 2L 14741633..14741675 274..232 185 95.3 Minus
Blast to na_te.dros performed 2015-02-10 23:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6830 255..278 111 95.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2429 198..277 110 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2396 255..277 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6754 255..277 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6775 255..277 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6796 255..277 106 95.7 Plus

BO16110.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:24 Download gff for BO16110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31775-PA 1..270 17..287 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:15:52 Download gff for BO16110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 26..309 1..287 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:17 Download gff for BO16110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 26..309 1..287 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:17 Download gff for BO16110.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14737393..14737651 29..287 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:15:52 Download gff for BO16110.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14737393..14737651 29..287 98 <- Minus

BO16110.complete Sequence

301 bp assembled on 2008-08-15

GenBank Submission: FJ633720

> BO16110.complete
GAAGTTATCAGTCGACATGAAGTTTTTGATCCTCTTCATTGCCCTATTCG
CCGCGGCCGCTGCCCTACCTCAGTTTGGATTCGGCGGTGGATTCGGTGAT
CAGCAGCAGCAGCAGCAAGGAGGATTTGGAGGTGGATTTGGTGATCAGCA
GCAGCAGCAAGGAGGATTTGGCGGTGGATTCGGAGGTGGATTCGGTGATC
AGCAGCAGCAGCAGCAAGGGGGATTTGGAGGTGGATTCGGAGGTGGATTC
GGTGATCAGCAGCAGCAACAGCAACAAGGCTGGGCAAGCTTTCTAGACCA
T

BO16110.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31775-RB 270 CG31775-PB 1..267 17..283 1320 99.6 Plus
CG31775-RA 270 CG31775-PA 1..267 17..283 1320 99.6 Plus
CG42586-RB 270 CG42586-PB 1..267 17..283 1320 99.6 Plus
CG31775-RB 270 CG31775-PB 106..258 77..217 365 85.6 Plus
CG31775-RA 270 CG31775-PA 106..258 77..217 365 85.6 Plus
CG31775-RB 270 CG31775-PB 61..201 122..274 350 85 Plus
CG31775-RA 270 CG31775-PA 61..201 122..274 350 85 Plus
CG31775-RB 270 CG31775-PB 159..221 76..138 300 98.4 Plus
CG31775-RA 270 CG31775-PA 159..221 76..138 300 98.4 Plus
CG31775-RB 270 CG31775-PB 60..122 175..237 285 96.8 Plus
CG31775-RA 270 CG31775-PA 60..122 175..237 285 96.8 Plus
CG31775-RB 270 CG31775-PB 60..102 232..274 185 95.3 Plus
CG31775-RB 270 CG31775-PB 216..258 76..118 185 95.3 Plus
CG31775-RA 270 CG31775-PA 60..102 232..274 185 95.3 Plus
CG31775-RA 270 CG31775-PA 216..258 76..118 185 95.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31775-RB 371 CG31775-RB 39..306 16..283 1325 99.6 Plus
CG31775-RA 613 CG31775-RA 39..306 16..283 1325 99.6 Plus
CG42586-RB 613 CG42586-RB 39..306 16..283 1325 99.6 Plus
CG31775-RB 371 CG31775-RB 145..297 77..217 365 85.6 Plus
CG31775-RA 613 CG31775-RA 145..297 77..217 365 85.6 Plus
CG31775-RB 371 CG31775-RB 100..240 122..274 350 85 Plus
CG31775-RA 613 CG31775-RA 100..240 122..274 350 85 Plus
CG31775-RB 371 CG31775-RB 198..260 76..138 300 98.4 Plus
CG31775-RA 613 CG31775-RA 198..260 76..138 300 98.4 Plus
CG31775-RB 371 CG31775-RB 99..161 175..237 285 96.8 Plus
CG31775-RA 613 CG31775-RA 99..161 175..237 285 96.8 Plus
CG31775-RB 371 CG31775-RB 99..141 232..274 185 95.3 Plus
CG31775-RB 371 CG31775-RB 255..297 76..118 185 95.3 Plus
CG31775-RA 613 CG31775-RA 99..141 232..274 185 95.3 Plus
CG31775-RA 613 CG31775-RA 255..297 76..118 185 95.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14737397..14737652 283..28 1265 99.6 Minus
2L 23513712 2L 14741468..14741723 283..28 1265 99.6 Minus
2L 23513712 2L 14737406..14737558 217..77 365 85.6 Minus
2L 23513712 2L 14741477..14741629 217..77 365 85.6 Minus
2L 23513712 2L 14737463..14737603 274..122 350 85 Minus
2L 23513712 2L 14741534..14741674 274..122 350 85 Minus
2L 23513712 2L 14737443..14737505 138..76 300 98.4 Minus
2L 23513712 2L 14741514..14741576 138..76 300 98.4 Minus
2L 23513712 2L 14737542..14737604 237..175 285 96.8 Minus
2L 23513712 2L 14741613..14741675 237..175 285 96.8 Minus
2L 23513712 2L 14737406..14737448 118..76 185 95.3 Minus
2L 23513712 2L 14737562..14737604 274..232 185 95.3 Minus
2L 23513712 2L 14741477..14741519 118..76 185 95.3 Minus
2L 23513712 2L 14741633..14741675 274..232 185 95.3 Minus
Blast to na_te.dros performed 2014-11-27 16:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6830 255..278 111 95.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2429 198..277 110 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2396 255..277 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6754 255..277 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6775 255..277 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6796 255..277 106 95.7 Plus

BO16110.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:14 Download gff for BO16110.complete
Subject Subject Range Query Range Percent Splice Strand
CG31775-RA 23..306 1..287 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:09 Download gff for BO16110.complete
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 40..306 17..285 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:21 Download gff for BO16110.complete
Subject Subject Range Query Range Percent Splice Strand
CG31775-RA 37..303 17..285 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:19 Download gff for BO16110.complete
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 40..306 17..285 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:19 Download gff for BO16110.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14737395..14737658 22..285 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:09 Download gff for BO16110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14737395..14737658 22..285 97   Minus

BO16110.pep Sequence

Translation from 16 to 301

> BO16110.pep
MKFLILFIALFAAAAALPQFGFGGGFGDQQQQQQGGFGGGFGDQQQQQGG
FGGGFGGGFGDQQQQQQGGFGGGFGGGFGDQQQQQQQGWASFLDH

BO16110.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31775-PB 89 CG31775-PB 1..89 1..89 489 100 Plus
CG31775-PA 89 CG31775-PA 1..89 1..89 489 100 Plus
CG42586-PB 89 CG42586-PB 1..89 1..89 489 100 Plus
CG42586-PA 89 CG42586-PA 1..89 1..89 489 100 Plus
CG15282-PB 79 CG15282-PB 1..76 1..88 225 63.7 Plus