Clone Sequence Records
BO16110.5prime Sequence
299 bp (299 high quality bases) assembled on 2006-06-16
> BO16110.5prime
GAAGTTATCAGTCGACATGAAGTTTTTGATCCTCTTCATTGCCCTATTCG
CCGCGGCCGCTGCCCTACCTCAGTTTGGATTCGGCGGTGGATTCGGTGAT
CAGCAGCAGCAGCAGCAAGGAGGATTTGGAGGTGGATTTGGTGATCAGCA
GCAGCAGCAAGGAGGATTTGGCGGTGGATTCGGAGGTGGATTCGGTGATC
AGCAGCAGCAGCAGCAAGGGGGATTTGGAGGTGGATTCGGAGGTGGATTC
GGTGATCAGCAGCAGCAACAGCAACAAGGCTGGGCAAGCTTTCTAGACC
BO16110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-PA | 270 | CG31775-RA | 1..267 | 17..283 | 1310 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 371 | CG31775-RB | 39..306 | 16..283 | 1325 | 99.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 39..306 | 16..283 | 1325 | 99.6 | Plus |
CG42586-RB | 613 | CG42586-RB | 39..306 | 16..283 | 1325 | 99.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 145..297 | 77..217 | 415 | 85.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 145..297 | 77..217 | 415 | 85.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 100..240 | 122..274 | 400 | 85 | Plus |
CG31775-RA | 613 | CG31775-RA | 100..240 | 122..274 | 400 | 85 | Plus |
CG31775-RB | 371 | CG31775-RB | 198..260 | 76..138 | 300 | 98.4 | Plus |
CG31775-RA | 613 | CG31775-RA | 198..260 | 76..138 | 300 | 98.4 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..161 | 175..237 | 285 | 96.8 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..161 | 175..237 | 285 | 96.8 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..141 | 232..274 | 185 | 95.3 | Plus |
CG31775-RB | 371 | CG31775-RB | 255..297 | 76..118 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..141 | 232..274 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 255..297 | 76..118 | 185 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14737397..14737652 | 283..28 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 14741468..14741723 | 283..28 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 14737406..14737558 | 217..77 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14741477..14741629 | 217..77 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14737463..14737603 | 274..122 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14741534..14741674 | 274..122 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14737443..14737505 | 138..76 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14741514..14741576 | 138..76 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14737542..14737604 | 237..175 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14741613..14741675 | 237..175 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14737406..14737448 | 118..76 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14737562..14737604 | 274..232 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741477..14741519 | 118..76 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741633..14741675 | 274..232 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2015-02-10 23:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6830 | 255..278 | 111 | 95.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2429 | 198..277 | 110 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2396 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6754 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6775 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6796 | 255..277 | 106 | 95.7 | Plus |
BO16110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:24 Download gff for
BO16110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-PA | 1..270 | 17..287 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:15:52 Download gff for
BO16110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 26..309 | 1..287 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:17 Download gff for
BO16110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 26..309 | 1..287 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:17 Download gff for
BO16110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737393..14737651 | 29..287 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:15:52 Download gff for
BO16110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14737393..14737651 | 29..287 | 98 | <- | Minus |
BO16110.complete Sequence
301 bp assembled on 2008-08-15
GenBank Submission: FJ633720
> BO16110.complete
GAAGTTATCAGTCGACATGAAGTTTTTGATCCTCTTCATTGCCCTATTCG
CCGCGGCCGCTGCCCTACCTCAGTTTGGATTCGGCGGTGGATTCGGTGAT
CAGCAGCAGCAGCAGCAAGGAGGATTTGGAGGTGGATTTGGTGATCAGCA
GCAGCAGCAAGGAGGATTTGGCGGTGGATTCGGAGGTGGATTCGGTGATC
AGCAGCAGCAGCAGCAAGGGGGATTTGGAGGTGGATTCGGAGGTGGATTC
GGTGATCAGCAGCAGCAACAGCAACAAGGCTGGGCAAGCTTTCTAGACCA
T
BO16110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 270 | CG31775-PB | 1..267 | 17..283 | 1320 | 99.6 | Plus |
CG31775-RA | 270 | CG31775-PA | 1..267 | 17..283 | 1320 | 99.6 | Plus |
CG42586-RB | 270 | CG42586-PB | 1..267 | 17..283 | 1320 | 99.6 | Plus |
CG31775-RB | 270 | CG31775-PB | 106..258 | 77..217 | 365 | 85.6 | Plus |
CG31775-RA | 270 | CG31775-PA | 106..258 | 77..217 | 365 | 85.6 | Plus |
CG31775-RB | 270 | CG31775-PB | 61..201 | 122..274 | 350 | 85 | Plus |
CG31775-RA | 270 | CG31775-PA | 61..201 | 122..274 | 350 | 85 | Plus |
CG31775-RB | 270 | CG31775-PB | 159..221 | 76..138 | 300 | 98.4 | Plus |
CG31775-RA | 270 | CG31775-PA | 159..221 | 76..138 | 300 | 98.4 | Plus |
CG31775-RB | 270 | CG31775-PB | 60..122 | 175..237 | 285 | 96.8 | Plus |
CG31775-RA | 270 | CG31775-PA | 60..122 | 175..237 | 285 | 96.8 | Plus |
CG31775-RB | 270 | CG31775-PB | 60..102 | 232..274 | 185 | 95.3 | Plus |
CG31775-RB | 270 | CG31775-PB | 216..258 | 76..118 | 185 | 95.3 | Plus |
CG31775-RA | 270 | CG31775-PA | 60..102 | 232..274 | 185 | 95.3 | Plus |
CG31775-RA | 270 | CG31775-PA | 216..258 | 76..118 | 185 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 371 | CG31775-RB | 39..306 | 16..283 | 1325 | 99.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 39..306 | 16..283 | 1325 | 99.6 | Plus |
CG42586-RB | 613 | CG42586-RB | 39..306 | 16..283 | 1325 | 99.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 145..297 | 77..217 | 365 | 85.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 145..297 | 77..217 | 365 | 85.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 100..240 | 122..274 | 350 | 85 | Plus |
CG31775-RA | 613 | CG31775-RA | 100..240 | 122..274 | 350 | 85 | Plus |
CG31775-RB | 371 | CG31775-RB | 198..260 | 76..138 | 300 | 98.4 | Plus |
CG31775-RA | 613 | CG31775-RA | 198..260 | 76..138 | 300 | 98.4 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..161 | 175..237 | 285 | 96.8 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..161 | 175..237 | 285 | 96.8 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..141 | 232..274 | 185 | 95.3 | Plus |
CG31775-RB | 371 | CG31775-RB | 255..297 | 76..118 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..141 | 232..274 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 255..297 | 76..118 | 185 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14737397..14737652 | 283..28 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 14741468..14741723 | 283..28 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 14737406..14737558 | 217..77 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14741477..14741629 | 217..77 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14737463..14737603 | 274..122 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14741534..14741674 | 274..122 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14737443..14737505 | 138..76 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14741514..14741576 | 138..76 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14737542..14737604 | 237..175 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14741613..14741675 | 237..175 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14737406..14737448 | 118..76 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14737562..14737604 | 274..232 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741477..14741519 | 118..76 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741633..14741675 | 274..232 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-27 16:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6830 | 255..278 | 111 | 95.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2429 | 198..277 | 110 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2396 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6754 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6775 | 255..277 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6796 | 255..277 | 106 | 95.7 | Plus |
BO16110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:14 Download gff for
BO16110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-RA | 23..306 | 1..287 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:09 Download gff for
BO16110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 40..306 | 17..285 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:21 Download gff for
BO16110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-RA | 37..303 | 17..285 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:19 Download gff for
BO16110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 40..306 | 17..285 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:19 Download gff for
BO16110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737395..14737658 | 22..285 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:09 Download gff for
BO16110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14737395..14737658 | 22..285 | 97 | | Minus |
BO16110.pep Sequence
Translation from 16 to 301
> BO16110.pep
MKFLILFIALFAAAAALPQFGFGGGFGDQQQQQQGGFGGGFGDQQQQQGG
FGGGFGGGFGDQQQQQQGGFGGGFGGGFGDQQQQQQQGWASFLDH
BO16110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-PB | 89 | CG31775-PB | 1..89 | 1..89 | 489 | 100 | Plus |
CG31775-PA | 89 | CG31775-PA | 1..89 | 1..89 | 489 | 100 | Plus |
CG42586-PB | 89 | CG42586-PB | 1..89 | 1..89 | 489 | 100 | Plus |
CG42586-PA | 89 | CG42586-PA | 1..89 | 1..89 | 489 | 100 | Plus |
CG15282-PB | 79 | CG15282-PB | 1..76 | 1..88 | 225 | 63.7 | Plus |