Clone Sequence Records
BO16133.5prime Sequence
317 bp (317 high quality bases) assembled on 2006-06-16
> BO16133.5prime
GAAGTTATCAGTCGACATGTTCAAAGTACTGTTCGTGCTCGCCGCCTTCG
TCGCCTCTCAGGCTATCGCCCATCCCGGCGTGGTGGCCGTGGCACCCGTG
GTGGCGCACCCGGCGGTGGTCCACACGCCCATCATCCATCATGGAGCCCA
CTCGGTGCACTCCCATGTTGTTCATCATCCGGCAGCCGTCAAGGTCATCA
CACCCGTCGTCCACAAGCCCGTGGTGGCGGTGCATGCTGTCAGGCCGGTG
GTTCCATTGGTTCCAGTGCATCATGCCGCCCCCGCCGTCGTCGTGCATCA
TGCAAGCTTTCTAGACC
BO16133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17298-PA | 288 | CG17298-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17298-RA | 495 | CG17298-RA | 79..363 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21283780..21283918 | 163..301 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 21283584..21283717 | 29..162 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:07:34 has no hits.
BO16133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:34 Download gff for
BO16133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17298-PA | 1..288 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:16:28 Download gff for
BO16133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17298-RA | 74..367 | 12..306 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:36:17 Download gff for
BO16133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17298-RA | 74..367 | 12..306 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:36:17 Download gff for
BO16133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21283780..21283922 | 163..306 | 98 | | Plus |
| 3R | 21283584..21283717 | 29..162 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:16:28 Download gff for
BO16133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17109306..17109439 | 29..162 | 100 | -> | Plus |
| arm_3R | 17109502..17109644 | 163..306 | 98 | | Plus |
BO16133.complete Sequence
319 bp assembled on 2008-08-15
GenBank Submission: FJ633724
> BO16133.complete
GAAGTTATCAGTCGACATGTTCAAAGTACTGTTCGTGCTCGCCGCCTTCG
TCGCCTCTCAGGCTATCGCCCATCCCGGCGTGGTGGCCGTGGCACCCGTG
GTGGCGCACCCGGCGGTGGTCCACACGCCCATCATCCATCATGGAGCCCA
CTCGGTGCACTCCCATGTTGTTCATCATCCGGCAGCCGTCAAGGTCATCA
CACCCGTCGTCCACAAGCCCGTGGTGGCGGTGCATGCTGTCAGGCCGGTG
GTTCCATTGGTTCCAGTGCATCATGCCGCCCCCGCCGTCGTCGTGCATCA
TGCAAGCTTTCTAGACCAT
BO16133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17298-RA | 288 | CG17298-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17298-RA | 495 | CG17298-RA | 79..363 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21283780..21283918 | 163..301 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 21283584..21283717 | 29..162 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:18:55 has no hits.
BO16133.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:35 Download gff for
BO16133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17298-RA | 74..367 | 12..306 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:28 Download gff for
BO16133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17298-RA | 84..363 | 22..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:27 Download gff for
BO16133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17298-RA | 84..363 | 22..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:38 Download gff for
BO16133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17298-RA | 84..363 | 22..303 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:38 Download gff for
BO16133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21283579..21283717 | 22..162 | 97 | -> | Plus |
| 3R | 21283780..21283918 | 163..303 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:28 Download gff for
BO16133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17109301..17109439 | 22..162 | 97 | -> | Plus |
| arm_3R | 17109502..17109640 | 163..303 | 98 | | Plus |
BO16133.pep Sequence
Translation from 16 to 319
> BO16133.pep
MFKVLFVLAAFVASQAIAHPGVVAVAPVVAHPAVVHTPIIHHGAHSVHSH
VVHHPAAVKVITPVVHKPVVAVHAVRPVVPLVPVHHAAPAVVVHHASFLD
H
BO16133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17298-PA | 95 | CG17298-PA | 1..95 | 1..95 | 495 | 100 | Plus |
