Clone Sequence Records
BO16161.5prime Sequence
323 bp (323 high quality bases) assembled on 2006-06-16
> BO16161.5prime
GAAGTTATCAGTCGACATGATTGTCCCACGCCTGGCACTTCCCATTAGCC
TTGCCCTGCAGCGCGTGTCGCGCCGGGTGGCGGAACACCCCCATAACCTA
AGGATCCTGCAGCGCCACATGTCCAGCGTGTACTTTCGCAGTGGAGCCAT
CAAACCCAAGCCCGAGGAGATGCCATTCGGCCTGCTGGCCATCTTCTGTG
CCGTCATACCGGGACTCTTCGTGGGCGCCACCATCAGCAAGAACGTGGCC
AACTTTCTGGAGGAGAACGATCTGTTCGTGCCCGCGGATGACGACGACGA
CGAGGATGCAAGCTTTCTAGACC
BO16161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-PA | 294 | CG17680-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-RA | 701 | CG17680-RA | 116..406 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18147592..18147882 | 307..17 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 06:45:25 has no hits.
BO16161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:45:50 Download gff for
BO16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-PA | 1..294 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:14:12 Download gff for
BO16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..411 | 17..313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:45:07 Download gff for
BO16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..411 | 17..313 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:45:07 Download gff for
BO16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18147587..18147882 | 17..313 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:14:12 Download gff for
BO16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14035092..14035387 | 17..313 | 99 | | Minus |
BO16161.complete Sequence
325 bp assembled on 2008-08-15
GenBank Submission: FJ633725
> BO16161.complete
GAAGTTATCAGTCGACATGATTGTCCCACGCCTGGCACTTCCCATTAGCC
TTGCCCTGCAGCGCGTGTCGCGCCGGGTGGCGGAACACCCCCATAACCTA
AGGATCCTGCAGCGCCACATGTCCAGCGTGTACTTTCGCAGTGGAGCCAT
CAAACCCAAGCCCGAGGAGATGCCATTCGGCCTGCTGGCCATCTTCTGTG
CCGTCATACCGGGACTCTTCGTGGGCGCCACCATCAGCAAGAACGTGGCC
AACTTTCTGGAGGAGAACGATCTGTTCGTGCCCGCGGATGACGACGACGA
CGAGGATGCAAGCTTTCTAGACCAT
BO16161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-RA | 294 | CG17680-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-RA | 701 | CG17680-RA | 116..406 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18147592..18147882 | 307..17 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:19:38 has no hits.
BO16161.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:29 Download gff for
BO16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 113..408 | 17..313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:26 Download gff for
BO16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..406 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:27 Download gff for
BO16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 113..403 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:44 Download gff for
BO16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..406 | 17..309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:44 Download gff for
BO16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18147590..18147882 | 17..309 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:26 Download gff for
BO16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14035095..14035387 | 17..309 | 99 | | Minus |
BO16161.pep Sequence
Translation from 16 to 325
> BO16161.pep
MIVPRLALPISLALQRVSRRVAEHPHNLRILQRHMSSVYFRSGAIKPKPE
EMPFGLLAIFCAVIPGLFVGATISKNVANFLEENDLFVPADDDDDEDASF
LDH
BO16161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-PA | 97 | CG17680-PA | 1..97 | 1..97 | 496 | 100 | Plus |
